Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004756

Physical Location & Seq

Genomic Coordinates Reverse (-)

29551801 .. 29558307

Gene Structure 6507 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1476 bp

ATGATCCATCAGTTCATTAATTTTGTCATTCGCCCTCCCAGGGCAGAGTATAACCCAGATCAATATCTTTGGGAAAGGGATTTCACGCTTGCAGGCAGAGCATACAAACGACAGGACTTGGAGCTTACGAATGCTAGGGGCCATACCTTGCGGTGTAGTCATTATCTGCCTTCACCTTTCCCTGATGATGTTTCTCTTCCATGTGTTATATACTGCCATGGAAACAGTGGGTGTCGGGCAGATGCAAATGAAGCTGCTGTAATGCTTCTTCCATCAAATATCACCGTTTTTACTCTTGATTTTTCCGGTTCAGGATTATCTGATGGTAACTATGTAAGCCTTGGTTGGCATGAGAGATATGACCTTAAGATTGTGGTTTCATATTTAAGAAGCAAAAAGCAAATCTCGCGTATAGGTCTTTGGGGGCGATCTATGGGTGCAGTCACATGCCTACTTTATGGAGCAGAAGACCCTTCCATTTCCGGAATGGTGTTGGATAGTGCCTTTTCAAGCTTGTATGTTCTAATGATGGAACTAGTTGACGTATACAAGATTCGGCTTCCTAAATTTACAGTTAAGATGGCAGTACAATATATGCGTCGGATAATTGAGAAGAAGGCAAAGTTTGATATCATGGATCTTAATTGCTTGCAGGTAGCAATCAAAACATTCATTCCTGCTTTATTTGGACATGCCAAGGATGACAAATTCATCCAAACCCATCATTCTGACATCATTTACAAGTCTTATGCGGGGGACAAAAATATTATACATTTCGATGGTGATCACAACTCTTCTCGACCACAGTTTTATTATGATTCAGTTTCCATTTTCTTCTATAATGTTCTCCATCCCCCGCAAACGTCTTCTCATTCATGTAAGCTTGACAAGTGTTATGGTTTGGGGGATTTGAAGATTGGTGCTGGTTTGGATGAGGGCTTGTTATATGAGATAATTACTGGAGTTCATTCTGCGGGTACTGACGTGGCAAGTTCATCTTCTGCTCCTCCTGCCATTTCAACCCCAAAATGTGTGGGCAAACTTCTTGATGAATTTGCACCAGCGACTACTGCTGTTGATTCTGTGAATGATGAAGCTGACACACTTAACAGTCACAAACCATCACATTTAGAGGAGCAGACTAATGGTGAGAATGTAGAATGTTGTTCATATACAAGCTCAAACAGGGAGAGTTGGGGCAGATGCTCTTCATTAGGAGGCAGTGATGAAGAATCTTCTGCTGATTGCACAGCTGCTGACAGCAGTCATCAGAAGAACCTTAACGTGTTTGCGAGGCCTCTTCGATGCATACAACAAAAATCATCAGAGCTAAGAAAAGAGGAAAAGAAAAAGAAGAAAGTTCTCGTTGCTCCAAAGAAGACCAAGAGTGAGAAATTTGAAAAGTTAGAGGCCCTGAGCAAACGACTGCGTCTTTGCATCCTAAAGCGAGTGAAAAATTGCAGACGTCCCACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrolase_4

Protein Analysis

492

Amino Acids

55.0

Weight (kDa)

8.45

Isoelectric Point (pI)

46.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	67 - 171	2.4e-07	alpha/beta hydrolase fold
Hydrolase_4	PF12146	68 - 175	4.5e-09	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17150 AT4G17150 AT4G17150 AT4G17150 AT4G17150
fragaria_vesca	FvH4_3g00060 FvH4_3g00060 FvH4_3g00060 FvH4_3g00060 FvH4_3g00060 FvH4_3g00060 FvH4_3g00060 FvH4_3g00060 FvH4_3g00060
malus_domestica	MD05G1364500.v1.1
prunus_persica	Prupe.4G000500_v2.0.a1 Prupe.4G000500_v2.0.a1
pyrus_communis	pycom05g33060 pycom10g29160
rosa_chinensis	RchiOBHm_Chr5g0000061
rosa_laevigata	RLG00000030840
rosa_multiflora	Rmu_ssc0000243.1_g000025
rosa_roxburghii	Rroxscaffold_1G00076010
rosa_rugosa	Rorug04G0381000 Rorug04G0381100 Rorug04G0381200
rosa_samantha	Rh5AG000500 Rh5BG001700 Rh5CG000600 Rh5DG000500
rosa_wichuraiana	Rw5G000080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1468
Acc36I	ACCTGC	1 cut(s)	643
AccI	GTMKAC	1 cut(s)	546
AccII	CGCG	1 cut(s)	409
AccIII	TCCGGA	1 cut(s)	482
AciI	CCGC	4 cut(s)	151, 752, 857, 974
AclWI	GGATC	1 cut(s)	645
AcsI	RAATTY	4 cut(s)	566, 707, 1052, 1394
AcyI	GRCGYC	1 cut(s)	1465
AfaI	GTAC	2 cut(s)	588, 979
AfiI	CCNNNNNNNGG	1 cut(s)	40
AflII	CTTAAG	1 cut(s)	365
AflIII	ACRYGT	1 cut(s)	1284
AgsI	TTSAA	4 cut(s)	510, 913, 1020, 1400
AhlI	ACTAGT	1 cut(s)	535
AjiI	CACGTC	1 cut(s)	985
AjnI	CCWGG	1 cut(s)	38
AluBI	AGCT	8 cut(s)	124, 254, 513, 883, 1097, 1179, 1253, 1330
AluI	AGCT	8 cut(s)	124, 254, 513, 883, 1097, 1179, 1253, 1330
AlwI	GGATC	1 cut(s)	645
AlwNI	CAGNNNCTG	1 cut(s)	1256
Aor13HI	TCCGGA	1 cut(s)	482
AoxI	GGCC	3 cut(s)	139, 1295, 1410
ApeKI	GCWGC	2 cut(s)	254, 1253
ApoI	RAATTY	4 cut(s)	566, 707, 1052, 1394
ArsI	GACNNNNNNTTYG	2 cut(s)	1416, 1448
AseI	ATTAAT	1 cut(s)	18
AspS9I	GGNCC	2 cut(s)	139, 1411
AsuHPI	GGTGA	4 cut(s)	165, 274, 794, 1160
BaeI	ACNNNNGTAYC	2 cut(s)	969, 1002
BarI	GAAGNNNNNNTAC	2 cut(s)	252, 284
BbsI	GAAGAC	3 cut(s)	474, 858, 1385
BbvI	GCAGC	2 cut(s)	241, 1240
BccI	CCATC	9 cut(s)	15, 280, 317, 523, 574, 729, 773, 858, 1129
BciT130I	CCWGG	1 cut(s)	40
BclI	TGATCA	1 cut(s)	784
BcuI	ACTAGT	1 cut(s)	535
BfaI	CTAG	2 cut(s)	135, 536
BfrI	CTTAAG	1 cut(s)	365
BfuAI	ACCTGC	1 cut(s)	643
BisI	GCNGC	2 cut(s)	255, 1254
BlsI	GCNGC	2 cut(s)	256, 1255
Bme1390I	CCNGG	1 cut(s)	40
BmgBI	CACGTC	1 cut(s)	985
BmgT120I	GGNCC	2 cut(s)	139, 1411
BmiI	GGNNCC	1 cut(s)	140
BmrFI	CCNGG	1 cut(s)	40
BmsI	GCATC	4 cut(s)	232, 1193, 1295, 1446
BoxI	GACNNNNGTC	1 cut(s)	1263
BpiI	GAAGAC	3 cut(s)	474, 858, 1385
BpmI	CTGGAG	1 cut(s)	981
Bpu10I	CCTNAGC	1 cut(s)	1415
BsaBI	GATNNNNATC	2 cut(s)	63, 783
BsaHI	GRCGYC	1 cut(s)	1465
BsaJI	CCNNGG	5 cut(s)	38, 39, 217, 340, 696
BsaWI	WCCGGW	2 cut(s)	305, 482
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse1I	ACTGG	1 cut(s)	964
Bse8I	GATNNNNATC	2 cut(s)	63, 783
BseAI	TCCGGA	1 cut(s)	482
BseBI	CCWGG	1 cut(s)	40
BseDI	CCNNGG	5 cut(s)	38, 39, 217, 340, 696
BseGI	GGATG	5 cut(s)	706, 711, 850, 937, 1437
BseJI	GATNNNNATC	2 cut(s)	63, 783
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMII	CTCAG	1 cut(s)	1406
BseNI	ACTGG	1 cut(s)	964
BseRI	GAGGAG	2 cut(s)	996, 1148
BseXI	GCAGC	2 cut(s)	241, 1240
BsgI	GTGCAG	1 cut(s)	459
Bsh1236I	CGCG	1 cut(s)	409
BshFI	GGCC	3 cut(s)	141, 1297, 1412
BsiSI	CCGG	2 cut(s)	306, 483
BslFI	GGGAC	2 cut(s)	770, 1452
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmFI	GGGAC	2 cut(s)	770, 1452
BsmI	GAATGC	1 cut(s)	136
BsnI	GGCC	3 cut(s)	141, 1297, 1412
Bsp13I	TCCGGA	1 cut(s)	482
Bsp143I	GATC	5 cut(s)	3, 58, 428, 637, 784
Bsp19I	CCATGG	1 cut(s)	217
BspACI	CCGC	4 cut(s)	151, 752, 857, 974
BspANI	GGCC	3 cut(s)	141, 1297, 1412
BspCNI	CTCAG	1 cut(s)	1407
BspEI	TCCGGA	1 cut(s)	482
BspFNI	CGCG	1 cut(s)	409
BspLI	GGNNCC	1 cut(s)	140
BspMI	ACCTGC	1 cut(s)	643
BspPI	GGATC	1 cut(s)	645
BspQI	GCTCTTC	1 cut(s)	1213
BspTI	CTTAAG	1 cut(s)	365
BsrI	ACTGG	1 cut(s)	964
BssECI	CCNNGG	5 cut(s)	38, 39, 217, 340, 696
BssMI	GATC	5 cut(s)	3, 58, 428, 637, 784
BssNAI	GTATAC	1 cut(s)	547
BssNI	GRCGYC	1 cut(s)	1465
BssT1I	CCWWGG	3 cut(s)	217, 340, 696
Bst1107I	GTATAC	1 cut(s)	547
Bst2UI	CCWGG	1 cut(s)	40
Bst4CI	ACNGT	5 cut(s)	227, 286, 574, 807, 1112
Bst6I	CTCTTC	4 cut(s)	201, 799, 1213, 1305
BstACI	GRCGYC	1 cut(s)	1465
BstAFI	CTTAAG	1 cut(s)	365
BstC8I	GCNNGC	3 cut(s)	90, 94, 650
BstDEI	CTNAG	3 cut(s)	1331, 1415, 1473
BstDSI	CCRYGG	1 cut(s)	217
BstF5I	GGATG	5 cut(s)	706, 711, 850, 937, 1437
BstFNI	CGCG	1 cut(s)	409
BstKTI	GATC	5 cut(s)	6, 61, 431, 640, 787
BstMBI	GATC	5 cut(s)	3, 58, 428, 637, 784
BstMWI	GCNNNNNNNGC	5 cut(s)	98, 251, 406, 1010, 1070
BstNI	CCWGG	1 cut(s)	40
BstNSI	RCATGY	2 cut(s)	450, 695
BstPAI	GACNNNNGTC	1 cut(s)	1263
BstSCI	CCNGG	1 cut(s)	38
BstUI	CGCG	1 cut(s)	409
BstV1I	GCAGC	2 cut(s)	241, 1240
BstV2I	GAAGAC	3 cut(s)	474, 858, 1385
BstX2I	RGATCY	1 cut(s)	637
BstYI	RGATCY	1 cut(s)	637
BstZ17I	GTATAC	1 cut(s)	547
BsuRI	GGCC	3 cut(s)	141, 1297, 1412
BtgI	CCRYGG	1 cut(s)	217
BtrI	CACGTC	1 cut(s)	985
BtsCI	GGATG	5 cut(s)	706, 711, 850, 937, 1437
BtsI	GCAGTG	1 cut(s)	1228
BtsIMutI	CAGTG	2 cut(s)	232, 1228
BveI	ACCTGC	1 cut(s)	643
Cac8I	GCNNGC	3 cut(s)	90, 94, 650
CaiI	CAGNNNCTG	1 cut(s)	1256
Cfr13I	GGNCC	2 cut(s)	139, 1411
CseI	GACGC	2 cut(s)	587, 1418
Csp6I	GTAC	2 cut(s)	587, 978
CspCI	CAANNNNNGTGG	2 cut(s)	1014, 1049
CviAII	CATG	7 cut(s)	201, 218, 350, 447, 634, 692, 876
CviQI	GTAC	2 cut(s)	587, 978
DdeI	CTNAG	3 cut(s)	1331, 1415, 1473
DpnI	GATC	5 cut(s)	5, 60, 430, 639, 786
DpnII	GATC	5 cut(s)	3, 58, 428, 637, 784
Eam1104I	CTCTTC	4 cut(s)	201, 799, 1213, 1305
EarI	CTCTTC	4 cut(s)	201, 799, 1213, 1305
Eco130I	CCWWGG	3 cut(s)	217, 340, 696
Eco147I	AGGCCT	1 cut(s)	1297
Eco32I	GATATC	1 cut(s)	631
EcoO109I	RGGNCCY	1 cut(s)	1411
EcoRII	CCWGG	1 cut(s)	38
EcoRV	GATATC	1 cut(s)	631
EcoT14I	CCWWGG	3 cut(s)	217, 340, 696
EcoT22I	ATGCAT	1 cut(s)	1310
ErhI	CCWWGG	3 cut(s)	217, 340, 696
FaeI	CATG	7 cut(s)	204, 221, 353, 450, 637, 695, 879
FalI	AAGNNNNNCTT	2 cut(s)	982, 1014
FaqI	GGGAC	2 cut(s)	770, 1452
FatI	CATG	7 cut(s)	200, 217, 349, 446, 633, 691, 875
FauI	CCCGC	3 cut(s)	745, 864, 967
FbaI	TGATCA	1 cut(s)	784
FblI	GTMKAC	1 cut(s)	546
Fnu4HI	GCNGC	2 cut(s)	255, 1254
FokI	GGATG	5 cut(s)	698, 713, 837, 944, 1424
Fsp4HI	GCNGC	2 cut(s)	255, 1254
FspBI	CTAG	2 cut(s)	135, 536
GluI	GCNGC	2 cut(s)	255, 1254
GsuI	CTGGAG	1 cut(s)	981
HaeIII	GGCC	3 cut(s)	141, 1297, 1412
HapII	CCGG	2 cut(s)	306, 483
HgaI	GACGC	2 cut(s)	587, 1418
Hin1I	GRCGYC	1 cut(s)	1465
Hin1II	CATG	7 cut(s)	204, 221, 353, 450, 637, 695, 879
HincII	GTYRAC	1 cut(s)	541
HindII	GTYRAC	1 cut(s)	541
HindIII	AAGCTT	2 cut(s)	511, 881
HinfI	GANTC	4 cut(s)	553, 818, 1079, 1232
HpaII	CCGG	2 cut(s)	306, 483
HphI	GGTGA	4 cut(s)	165, 274, 794, 1160
Hpy166II	GTNNAC	2 cut(s)	541, 547
Hpy188I	TCNGA	5 cut(s)	322, 603, 730, 1272, 1327
Hpy188III	TCNNGA	5 cut(s)	296, 312, 483, 798, 1046
Hpy8I	GTNNAC	2 cut(s)	541, 547
Hpy99I	CGWCG	1 cut(s)	603
HpyAV	CCTTC	3 cut(s)	180, 483, 610
HpyCH4III	ACNGT	5 cut(s)	227, 286, 574, 807, 1112
HpyCH4IV	ACGT	5 cut(s)	543, 863, 984, 1284, 1465
HpyCH4V	TGCA	9 cut(s)	92, 245, 440, 652, 1058, 1248, 1308, 1437, 1461
HpyF10VI	GCNNNNNNNGC	5 cut(s)	98, 251, 406, 1010, 1070
HpyF3I	CTNAG	3 cut(s)	1331, 1415, 1473
HpySE526I	ACGT	5 cut(s)	543, 863, 984, 1284, 1465
Hsp92I	GRCGYC	1 cut(s)	1465
Hsp92II	CATG	7 cut(s)	204, 221, 353, 450, 637, 695, 879
Kpn2I	TCCGGA	1 cut(s)	482
Ksp22I	TGATCA	1 cut(s)	784
Kzo9I	GATC	5 cut(s)	3, 58, 428, 637, 784
LguI	GCTCTTC	1 cut(s)	1213
LmnI	GCTCC	5 cut(s)	121, 461, 1009, 1135, 1375
Lsp1109I	GCAGC	2 cut(s)	241, 1240
LweI	GCATC	4 cut(s)	232, 1193, 1295, 1446
MaeI	CTAG	2 cut(s)	135, 536
MaeII	ACGT	5 cut(s)	543, 863, 984, 1284, 1465
MaeIII	GTNAC	3 cut(s)	326, 442, 1112
MalI	GATC	5 cut(s)	5, 60, 430, 639, 786
MboI	GATC	5 cut(s)	3, 58, 428, 637, 784
MflI	RGATCY	1 cut(s)	637
MluCI	AATT	9 cut(s)	19, 566, 606, 643, 707, 954, 1052, 1394, 1456
MmeI	TCCRAC	2 cut(s)	474, 581
MnlI	CCTC	9 cut(s)	45, 928, 1017, 1126, 1211, 1287, 1308, 1333, 1402
Mph1103I	ATGCAT	1 cut(s)	1310
MroI	TCCGGA	1 cut(s)	482
MseI	TTAA	7 cut(s)	18, 366, 386, 576, 642, 1107, 1281
MslI	CAYNNNNRTG	1 cut(s)	777
MspA1I	CMGCKG	1 cut(s)	1253
MspCI	CTTAAG	1 cut(s)	365
MspI	CCGG	2 cut(s)	306, 483
MspR9I	CCNGG	1 cut(s)	40
Mva1269I	GAATGC	1 cut(s)	136
MvaI	CCWGG	1 cut(s)	40
MvnI	CGCG	1 cut(s)	409
MwoI	GCNNNNNNNGC	5 cut(s)	98, 251, 406, 1010, 1070
NcoI	CCATGG	1 cut(s)	217
NdeII	GATC	5 cut(s)	3, 58, 428, 637, 784
NlaIII	CATG	7 cut(s)	204, 221, 353, 450, 637, 695, 879
NlaIV	GGNNCC	1 cut(s)	140
NmuCI	GTSAC	2 cut(s)	442, 1112
NsiI	ATGCAT	1 cut(s)	1310
NspI	RCATGY	2 cut(s)	450, 695
PasI	CCCWGGG	1 cut(s)	39
PceI	AGGCCT	1 cut(s)	1297
PciSI	GCTCTTC	1 cut(s)	1213
PctI	GAATGC	1 cut(s)	136
PfeI	GAWTC	4 cut(s)	553, 818, 1079, 1232
PflFI	GACNNNGTC	1 cut(s)	1428
PkrI	GCNGC	2 cut(s)	256, 1255
PshAI	GACNNNNGTC	1 cut(s)	1263
PshBI	ATTAAT	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	38
PspGI	CCWGG	1 cut(s)	38
PspN4I	GGNNCC	1 cut(s)	140
PspPI	GGNCC	2 cut(s)	139, 1411
PstNI	CAGNNNCTG	1 cut(s)	1256
PsuI	RGATCY	1 cut(s)	637
PsyI	GACNNNGTC	1 cut(s)	1428
PvuII	CAGCTG	1 cut(s)	1253
RsaI	GTAC	2 cut(s)	588, 979
RsaNI	GTAC	2 cut(s)	587, 978
RseI	CAYNNNNRTG	1 cut(s)	777
SapI	GCTCTTC	1 cut(s)	1213
SaqAI	TTAA	7 cut(s)	18, 366, 386, 576, 642, 1107, 1281
SatI	GCNGC	2 cut(s)	255, 1254
Sau3AI	GATC	5 cut(s)	3, 58, 428, 637, 784
Sau96I	GGNCC	2 cut(s)	139, 1411
ScrFI	CCNGG	1 cut(s)	40
SfaNI	GCATC	4 cut(s)	232, 1193, 1295, 1446
SmiMI	CAYNNNNRTG	1 cut(s)	777
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
SpeI	ACTAGT	1 cut(s)	535
Sse9I	AATT	9 cut(s)	19, 566, 606, 643, 707, 954, 1052, 1394, 1456
SseBI	AGGCCT	1 cut(s)	1297
SsiI	CCGC	4 cut(s)	151, 752, 857, 974
SspI	AATATT	1 cut(s)	766
SspMI	CTAG	2 cut(s)	135, 536
StuI	AGGCCT	1 cut(s)	1297
StyD4I	CCNGG	1 cut(s)	38
StyI	CCWWGG	3 cut(s)	217, 340, 696
TaaI	ACNGT	5 cut(s)	227, 286, 574, 807, 1112
TaiI	ACGT	5 cut(s)	546, 866, 987, 1287, 1468
TaqI	TCGA	3 cut(s)	777, 799, 1303
TasI	AATT	9 cut(s)	19, 566, 606, 643, 707, 954, 1052, 1394, 1456
TatI	WGTACW	1 cut(s)	586
TfiI	GAWTC	4 cut(s)	553, 818, 1079, 1232
Tru1I	TTAA	7 cut(s)	18, 366, 386, 576, 642, 1107, 1281
Tru9I	TTAA	7 cut(s)	18, 366, 386, 576, 642, 1107, 1281
TscAI	CASTG	2 cut(s)	232, 1228
TseFI	GTSAC	2 cut(s)	442, 1112
TseI	GCWGC	2 cut(s)	254, 1253
Tsp45I	GTSAC	2 cut(s)	442, 1112
TspRI	CASTG	2 cut(s)	232, 1228
Tth111I	GACNNNGTC	1 cut(s)	1428
Vha464I	CTTAAG	1 cut(s)	365
VspI	ATTAAT	1 cut(s)	18
XapI	RAATTY	4 cut(s)	566, 707, 1052, 1394
XceI	RCATGY	2 cut(s)	450, 695
XcmI	CCANNNNNNNNNTGG	2 cut(s)	224, 484
XmiI	GTMKAC	1 cut(s)	546
XspI	CTAG	2 cut(s)	135, 536
ZraI	GACGTC	1 cut(s)	1466
Zsp2I	ATGCAT	1 cut(s)	1310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.