pycom111g00500

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0008943
Physical Location & Seq
Reverse (-)
356265 .. 357657
1393 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 822 bp
ATGCAACAACTGTGTAGAAAGATCGATCACCATTGTCCCTGGGTTGGGCAGTGTATTGGTCTGAGGAACTATCGATTCTTCTTCATGTTTGTCTTCAACACAACTCTTCTTTGTATATACGTTTTTGGATTCTGCTGGGTGTACGTTAGAAGGATCATGGGAGCTGAGGAGACAACGATTTGGAAAGCAATGATTAAAACTCCAGCATCTATTGTGCTAATAGTTTACACTTTCATATCGATGTGGTTTGTTGGTGGCCTTACTGCCTTCCATTTGTATCTCATCAGTACAAATCAGACTACATATGAGAATTTCCGGTACCGATATGATAGGCGAGCCAACCCCTATAACAAAGGAGTTGTCGACAATTTCAAGGAGATATTTTGTACCGCCATTCCCAAGTCTAAGAACCATTTCAGGGACAAGGTGCCAAGGGAGCCGGCGTTACCTCCTCGATCAGGGGGTGGGGGTTTTATGAGCCCAAATATGGGAAAAGCTGTGGAGGACATTGAAATGGGCAGGAAAACCGTGTGGGGTGACATGAGTGCTGGGGGAGATAATTACGAAGGGCAGCATAACGGCAATGATCGTGTGAATGTGAAAGATGGTGAATTAAGTGAAGTATCCCCAGATATAAGGACGACAGTAGATGAAACTGTGGATCGTGCTGGAATGCATCCCAGGCGAGCCAGCTGGGGAAGGAAAAGTGGAAGTTGGGAAATGTCCCCAGAAGTTCTTGCCTTGGCAGCTAGAGTCGGGGAACCAAACCGCATAGGCGGGAGTAGCAGCGGTGGTCTGACGAACGAGAACCGACATACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko04391 map04391
Pfam Domains
Protein Families
DHHC

Protein Analysis

274

Amino Acids

31.0

Weight (kDa)

9.12

Isoelectric Point (pI)

34.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 3 - 106 1.1e-25 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 318
AccB1I GGYRCC 2 cut(s) 318, 427
AccI GTMKAC 1 cut(s) 363
AciI CCGC 4 cut(s) 390, 769, 777, 789
AclWI GGATC 2 cut(s) 161, 669
AcsI RAATTY 1 cut(s) 310
AfaI GTAC 4 cut(s) 143, 289, 320, 388
AfiI CCNNNNNNNGG 6 cut(s) 44, 45, 418, 458, 487, 488
AgsI TTSAA 3 cut(s) 97, 373, 512
AjnI CCWGG 2 cut(s) 38, 680
AluBI AGCT 4 cut(s) 164, 497, 693, 749
AluI AGCT 4 cut(s) 164, 497, 693, 749
Alw26I GTCTC 1 cut(s) 164
AlwI GGATC 2 cut(s) 161, 669
AoxI GGCC 1 cut(s) 256
ApeKI GCWGC 3 cut(s) 571, 746, 786
ApoI RAATTY 1 cut(s) 310
ArsI GACNNNNNNTTYG 2 cut(s) 345, 377
Asp700I GAANNNNTTC 1 cut(s) 413
Asp718I GGTACC 1 cut(s) 318
AsuHPI GGTGA 3 cut(s) 20, 548, 620
BanI GGYRCC 2 cut(s) 318, 427
BanII GRGCYC 1 cut(s) 482
BbsI GAAGAC 1 cut(s) 85
BbvCI CCTCAGC 1 cut(s) 165
BbvI GCAGC 3 cut(s) 583, 758, 798
BccI CCATC 1 cut(s) 599
BceAI ACGGC 1 cut(s) 595
BciT130I CCWGG 2 cut(s) 40, 682
BciVI GTATCC 1 cut(s) 634
BcoDI GTCTC 1 cut(s) 164
BfaI CTAG 1 cut(s) 750
BfuI GTATCC 1 cut(s) 634
BisI GCNGC 3 cut(s) 572, 747, 787
BlsI GCNGC 3 cut(s) 573, 748, 788
Bme1390I CCNGG 2 cut(s) 40, 682
BmiI GGNNCC 4 cut(s) 320, 429, 438, 762
BmrFI CCNGG 2 cut(s) 40, 682
BmsI GCATC 2 cut(s) 215, 685
BpiI GAAGAC 1 cut(s) 85
BpmI CTGGAG 1 cut(s) 186
Bpu10I CCTNAGC 1 cut(s) 165
Bsa29I ATCGAT 3 cut(s) 24, 73, 239
BsaJI CCNNGG 5 cut(s) 38, 39, 431, 680, 741
BsaWI WCCGGW 1 cut(s) 315
BsaXI ACNNNNNCTCC 2 cut(s) 428, 458
Bsc4I CCNNNNNNNGG 6 cut(s) 44, 45, 418, 458, 487, 488
Bse118I RCCGGY 1 cut(s) 439
Bse3DI GCAATG 2 cut(s) 195, 589
BseBI CCWGG 2 cut(s) 40, 682
BseCI ATCGAT 3 cut(s) 24, 73, 239
BseDI CCNNGG 5 cut(s) 38, 39, 431, 680, 741
BseGI GGATG 1 cut(s) 676
BseLI CCNNNNNNNGG 6 cut(s) 44, 45, 418, 458, 487, 488
BseMI GCAATG 2 cut(s) 195, 589
BseMII CTCAG 2 cut(s) 53, 156
BseRI GAGGAG 2 cut(s) 182, 441
BseXI GCAGC 3 cut(s) 583, 758, 798
BseYI CCCAGC 3 cut(s) 135, 548, 693
BshFI GGCC 1 cut(s) 258
BshNI GGYRCC 2 cut(s) 318, 427
BshVI ATCGAT 3 cut(s) 24, 73, 239
BsiSI CCGG 2 cut(s) 316, 440
BslFI GGGAC 3 cut(s) 21, 434, 709
BslI CCNNNNNNNGG 6 cut(s) 44, 45, 418, 458, 487, 488
BsmAI GTCTC 1 cut(s) 164
BsmFI GGGAC 3 cut(s) 21, 434, 709
BsmI GAATGC 1 cut(s) 678
BsnI GGCC 1 cut(s) 258
Bsp1286I GDGCHC 1 cut(s) 482
Bsp143I GATC 6 cut(s) 21, 25, 153, 455, 586, 661
BspACI CCGC 4 cut(s) 390, 769, 777, 789
BspANI GGCC 1 cut(s) 258
BspCNI CTCAG 2 cut(s) 54, 157
BspDI ATCGAT 3 cut(s) 24, 73, 239
BspLI GGNNCC 4 cut(s) 320, 429, 438, 762
BspPI GGATC 2 cut(s) 161, 669
BspT107I GGYRCC 2 cut(s) 318, 427
BsrDI GCAATG 2 cut(s) 195, 589
BsrFI RCCGGY 1 cut(s) 439
BssAI RCCGGY 1 cut(s) 439
BssECI CCNNGG 5 cut(s) 38, 39, 431, 680, 741
BssMI GATC 6 cut(s) 21, 25, 153, 455, 586, 661
BssT1I CCWWGG 2 cut(s) 431, 741
Bst2UI CCWGG 2 cut(s) 40, 682
Bst4CI ACNGT 4 cut(s) 12, 529, 646, 658
Bst6I CTCTTC 1 cut(s) 111
BstC8I GCNNGC 4 cut(s) 336, 441, 687, 691
BstDEI CTNAG 3 cut(s) 62, 165, 405
BstENI CCTNNNNNAGG 1 cut(s) 456
BstF5I GGATG 1 cut(s) 676
BstKTI GATC 6 cut(s) 24, 28, 156, 458, 589, 664
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 6 cut(s) 21, 25, 153, 455, 586, 661
BstMWI GCNNNNNNNGC 4 cut(s) 436, 682, 746, 783
BstNI CCWGG 2 cut(s) 40, 682
BstSCI CCNGG 2 cut(s) 38, 680
BstV1I GCAGC 3 cut(s) 583, 758, 798
BstV2I GAAGAC 1 cut(s) 85
Bsu15I ATCGAT 3 cut(s) 24, 73, 239
BsuI GTATCC 1 cut(s) 634
BsuRI GGCC 1 cut(s) 258
BsuTUI ATCGAT 3 cut(s) 24, 73, 239
BtsCI GGATG 1 cut(s) 676
BtsI GCAGTG 1 cut(s) 56
BtsIMutI CAGTG 1 cut(s) 56
Cac8I GCNNGC 4 cut(s) 336, 441, 687, 691
Cfr10I RCCGGY 1 cut(s) 439
ClaI ATCGAT 3 cut(s) 24, 73, 239
Csp6I GTAC 4 cut(s) 142, 288, 319, 387
CviAII CATG 3 cut(s) 85, 157, 541
CviJI RGCY 9 cut(s) 164, 258, 338, 439, 480, 497, 689, 693, 749
CviKI_1 RGCY 9 cut(s) 164, 258, 338, 439, 480, 497, 689, 693, 749
CviQI GTAC 4 cut(s) 142, 288, 319, 387
DdeI CTNAG 3 cut(s) 62, 165, 405
DpnI GATC 6 cut(s) 23, 27, 155, 457, 588, 663
DpnII GATC 6 cut(s) 21, 25, 153, 455, 586, 661
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
Eco130I CCWWGG 2 cut(s) 431, 741
Eco24I GRGCYC 1 cut(s) 482
EcoNI CCTNNNNNAGG 1 cut(s) 456
EcoRII CCWGG 2 cut(s) 38, 680
EcoT14I CCWWGG 2 cut(s) 431, 741
EcoT22I ATGCAT 1 cut(s) 678
EcoT38I GRGCYC 1 cut(s) 482
ErhI CCWWGG 2 cut(s) 431, 741
FaeI CATG 3 cut(s) 88, 160, 544
FaqI GGGAC 3 cut(s) 21, 434, 709
FatI CATG 3 cut(s) 84, 156, 540
FauI CCCGC 1 cut(s) 770
FauNDI CATATG 1 cut(s) 304
FblI GTMKAC 1 cut(s) 363
Fnu4HI GCNGC 3 cut(s) 572, 747, 787
FokI GGATG 1 cut(s) 663
FriOI GRGCYC 1 cut(s) 482
Fsp4HI GCNGC 3 cut(s) 572, 747, 787
FspBI CTAG 1 cut(s) 750
GluI GCNGC 3 cut(s) 572, 747, 787
GsaI CCCAGC 3 cut(s) 139, 552, 697
GsuI CTGGAG 1 cut(s) 186
HaeIII GGCC 1 cut(s) 258
HapII CCGG 2 cut(s) 316, 440
Hin1II CATG 3 cut(s) 88, 160, 544
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HinfI GANTC 3 cut(s) 75, 129, 753
HpaII CCGG 2 cut(s) 316, 440
HphI GGTGA 3 cut(s) 20, 548, 620
Hpy166II GTNNAC 3 cut(s) 142, 226, 364
Hpy188I TCNGA 3 cut(s) 63, 297, 798
Hpy8I GTNNAC 3 cut(s) 142, 226, 364
HpyAV CCTTC 4 cut(s) 144, 277, 560, 693
HpyCH4III ACNGT 4 cut(s) 12, 529, 646, 658
HpyCH4IV ACGT 2 cut(s) 120, 144
HpyCH4V TGCA 2 cut(s) 4, 676
HpyF10VI GCNNNNNNNGC 4 cut(s) 436, 682, 746, 783
HpyF3I CTNAG 3 cut(s) 62, 165, 405
HpySE526I ACGT 2 cut(s) 120, 144
Hsp92II CATG 3 cut(s) 88, 160, 544
KpnI GGTACC 1 cut(s) 322
KroI GCCGGC 1 cut(s) 439
KroNI GCCGGC 1 cut(s) 441
Kzo9I GATC 6 cut(s) 21, 25, 153, 455, 586, 661
LmnI GCTCC 2 cut(s) 161, 436
Lsp1109I GCAGC 3 cut(s) 583, 758, 798
LweI GCATC 2 cut(s) 215, 685
MaeI CTAG 1 cut(s) 750
MaeII ACGT 2 cut(s) 120, 144
MaeIII GTNAC 2 cut(s) 444, 536
MalI GATC 6 cut(s) 23, 27, 155, 457, 588, 663
MboI GATC 6 cut(s) 21, 25, 153, 455, 586, 661
MboII GAAGA 4 cut(s) 70, 73, 85, 98
MhlI GDGCHC 1 cut(s) 482
MluCI AATT 4 cut(s) 310, 367, 559, 611
MlyI GAGTC 1 cut(s) 762
MnlI CCTC 5 cut(s) 57, 160, 459, 462, 496
Mph1103I ATGCAT 1 cut(s) 678
MroNI GCCGGC 1 cut(s) 439
MroXI GAANNNNTTC 1 cut(s) 413
MseI TTAA 2 cut(s) 195, 614
MslI CAYNNNNRTG 2 cut(s) 239, 512
MspA1I CMGCKG 2 cut(s) 693, 789
MspI CCGG 2 cut(s) 316, 440
MspR9I CCNGG 2 cut(s) 40, 682
Mva1269I GAATGC 1 cut(s) 678
MvaI CCWGG 2 cut(s) 40, 682
MwoI GCNNNNNNNGC 4 cut(s) 436, 682, 746, 783
NaeI GCCGGC 1 cut(s) 441
NdeI CATATG 1 cut(s) 304
NdeII GATC 6 cut(s) 21, 25, 153, 455, 586, 661
NgoMIV GCCGGC 1 cut(s) 439
NlaIII CATG 3 cut(s) 88, 160, 544
NlaIV GGNNCC 4 cut(s) 320, 429, 438, 762
NmuCI GTSAC 1 cut(s) 536
NsiI ATGCAT 1 cut(s) 678
PasI CCCWGGG 1 cut(s) 39
PctI GAATGC 1 cut(s) 678
PdiI GCCGGC 1 cut(s) 441
PdmI GAANNNNTTC 1 cut(s) 413
PfeI GAWTC 2 cut(s) 75, 129
PkrI GCNGC 3 cut(s) 573, 748, 788
PleI GAGTC 1 cut(s) 761
PpsI GAGTC 1 cut(s) 761
Psp6I CCWGG 2 cut(s) 38, 680
PspFI CCCAGC 3 cut(s) 135, 548, 693
PspGI CCWGG 2 cut(s) 38, 680
PspN4I GGNNCC 4 cut(s) 320, 429, 438, 762
PvuII CAGCTG 1 cut(s) 693
RsaI GTAC 4 cut(s) 143, 289, 320, 388
RsaNI GTAC 4 cut(s) 142, 288, 319, 387
RseI CAYNNNNRTG 2 cut(s) 239, 512
SalI GTCGAC 1 cut(s) 362
SaqAI TTAA 2 cut(s) 195, 614
SatI GCNGC 3 cut(s) 572, 747, 787
Sau3AI GATC 6 cut(s) 21, 25, 153, 455, 586, 661
SchI GAGTC 1 cut(s) 762
ScrFI CCNGG 2 cut(s) 40, 682
SduI GDGCHC 1 cut(s) 482
SetI ASST 8 cut(s) 123, 147, 166, 429, 451, 499, 695, 751
SfaNI GCATC 2 cut(s) 215, 685
SmiMI CAYNNNNRTG 2 cut(s) 239, 512
Sse9I AATT 4 cut(s) 310, 367, 559, 611
SsiI CCGC 4 cut(s) 390, 769, 777, 789
SspMI CTAG 1 cut(s) 750
StyD4I CCNGG 2 cut(s) 38, 680
StyI CCWWGG 2 cut(s) 431, 741
TaaI ACNGT 4 cut(s) 12, 529, 646, 658
TaiI ACGT 2 cut(s) 123, 147
TaqI TCGA 5 cut(s) 24, 73, 239, 363, 454
TasI AATT 4 cut(s) 310, 367, 559, 611
TatI WGTACW 1 cut(s) 287
TfiI GAWTC 2 cut(s) 75, 129
Tru1I TTAA 2 cut(s) 195, 614
Tru9I TTAA 2 cut(s) 195, 614
TscAI CASTG 1 cut(s) 56
TseFI GTSAC 1 cut(s) 536
TseI GCWGC 3 cut(s) 571, 746, 786
Tsp45I GTSAC 1 cut(s) 536
TspDTI ATGAA 3 cut(s) 73, 223, 666
TspRI CASTG 1 cut(s) 56
XagI CCTNNNNNAGG 1 cut(s) 456
XapI RAATTY 1 cut(s) 310
XmiI GTMKAC 1 cut(s) 363
XmnI GAANNNNTTC 1 cut(s) 413
XspI CTAG 1 cut(s) 750
Zsp2I ATGCAT 1 cut(s) 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.