pycom111g03570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0014779
Physical Location & Seq
Reverse (-)
2188848 .. 2189295
448 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g03570.2

Sequence Viewer

Length: 351 bp
ATGACTTTTCTACGCACCTTCCATACGTGGGTTCGCTTAAATAACCACAAACTCCCCAAATCAAACCTCACTCGATCGAAAGCTCGAACCCAAAAACTTGCACAGAATTGTAAATATGTTGCCAACCGATGCTCCCCAAAAACCCCCCAACAAATTACTCAAAGACCGGACTTCATCGGCCACTCTGCTTACTTCAACCTCACAATCTGCTACCTCACCACAATGTACCGGGCGTACCAGGCCGGCAACTACCCGGTCCTCGCTTTCGTGGTGTTTTCTACGTGGCCTACTGGGGTTTGGACAAGTGTCAGCAAGTGTACAGCTGGCTGCCACATGGCGATAAGTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.34

Weight (kDa)

10.23

Isoelectric Point (pI)

30.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 178
AfaI GTAC 3 cut(s) 227, 236, 319
AfiI CCNNNNNNNGG 1 cut(s) 28
AgsI TTSAA 1 cut(s) 196
AjnI CCWGG 1 cut(s) 237
AluBI AGCT 2 cut(s) 83, 323
AluI AGCT 2 cut(s) 83, 323
AoxI GGCC 3 cut(s) 178, 240, 284
ApeKI GCWGC 1 cut(s) 327
AspS9I GGNCC 1 cut(s) 256
AsuC2I CCSGG 2 cut(s) 230, 254
AsuHPI GGTGA 1 cut(s) 208
AvaII GGWCC 1 cut(s) 256
BbvI GCAGC 1 cut(s) 314
BciT130I CCWGG 1 cut(s) 239
BcnI CCSGG 2 cut(s) 230, 254
BisI GCNGC 1 cut(s) 328
BlsI GCNGC 1 cut(s) 329
Bme1390I CCNGG 3 cut(s) 230, 239, 254
Bme18I GGWCC 1 cut(s) 256
BmgT120I GGNCC 1 cut(s) 256
BmrFI CCNGG 3 cut(s) 230, 239, 254
BmrI ACTGGG 1 cut(s) 300
BmsI GCATC 1 cut(s) 119
BmuI ACTGGG 1 cut(s) 300
BoxI GACNNNNGTC 1 cut(s) 305
BpuMI CCSGG 2 cut(s) 230, 254
BsaAI YACGTR 2 cut(s) 27, 282
BsaWI WCCGGW 1 cut(s) 166
BsaXI ACNNNNNCTCC 2 cut(s) 116, 146
Bsc4I CCNNNNNNNGG 1 cut(s) 28
Bse118I RCCGGY 1 cut(s) 242
Bse1I ACTGG 1 cut(s) 295
BseBI CCWGG 1 cut(s) 239
BseLI CCNNNNNNNGG 1 cut(s) 28
BseNI ACTGG 1 cut(s) 295
BseXI GCAGC 1 cut(s) 314
Bsh1285I CGRYCG 1 cut(s) 77
BshFI GGCC 3 cut(s) 180, 242, 286
BsiEI CGRYCG 1 cut(s) 77
BsiSI CCGG 4 cut(s) 167, 229, 243, 254
BslI CCNNNNNNNGG 1 cut(s) 28
BsnI GGCC 3 cut(s) 180, 242, 286
Bsp1407I TGTACA 1 cut(s) 317
Bsp143I GATC 1 cut(s) 74
BspANI GGCC 3 cut(s) 180, 242, 286
BsrFI RCCGGY 1 cut(s) 242
BsrGI TGTACA 1 cut(s) 317
BsrI ACTGG 1 cut(s) 295
BssAI RCCGGY 1 cut(s) 242
BssMI GATC 1 cut(s) 74
Bst2UI CCWGG 1 cut(s) 239
BstAUI TGTACA 1 cut(s) 317
BstBAI YACGTR 2 cut(s) 27, 282
BstC8I GCNNGC 2 cut(s) 244, 325
BstKTI GATC 1 cut(s) 77
BstMBI GATC 1 cut(s) 74
BstMCI CGRYCG 1 cut(s) 77
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstNI CCWGG 1 cut(s) 239
BstPAI GACNNNNGTC 1 cut(s) 305
BstSCI CCNGG 3 cut(s) 228, 237, 252
BstV1I GCAGC 1 cut(s) 314
BsuRI GGCC 3 cut(s) 180, 242, 286
Cac8I GCNNGC 2 cut(s) 244, 325
Cfr10I RCCGGY 1 cut(s) 242
Cfr13I GGNCC 1 cut(s) 256
Csp6I GTAC 3 cut(s) 226, 235, 318
CviAII CATG 1 cut(s) 334
CviJI RGCY 6 cut(s) 83, 180, 242, 286, 323, 327
CviKI_1 RGCY 6 cut(s) 83, 180, 242, 286, 323, 327
CviQI GTAC 3 cut(s) 226, 235, 318
DpnI GATC 1 cut(s) 76
DpnII GATC 1 cut(s) 74
EaeI YGGCCR 1 cut(s) 178
Eco47I GGWCC 1 cut(s) 256
EcoRII CCWGG 1 cut(s) 237
FaeI CATG 1 cut(s) 337
FaiI YATR 3 cut(s) 24, 117, 335
FatI CATG 1 cut(s) 333
Fnu4HI GCNGC 1 cut(s) 328
Fsp4HI GCNGC 1 cut(s) 328
GluI GCNGC 1 cut(s) 328
HaeIII GGCC 3 cut(s) 180, 242, 286
HapII CCGG 4 cut(s) 167, 229, 243, 254
Hin1II CATG 1 cut(s) 337
HpaII CCGG 4 cut(s) 167, 229, 243, 254
HphI GGTGA 1 cut(s) 208
Hpy166II GTNNAC 1 cut(s) 318
Hpy8I GTNNAC 1 cut(s) 318
HpyAV CCTTC 1 cut(s) 28
HpyCH4IV ACGT 2 cut(s) 26, 281
HpyCH4V TGCA 1 cut(s) 101
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpySE526I ACGT 2 cut(s) 26, 281
Hsp92II CATG 1 cut(s) 337
KroI GCCGGC 1 cut(s) 242
KroNI GCCGGC 1 cut(s) 244
Kzo9I GATC 1 cut(s) 74
LmnI GCTCC 1 cut(s) 137
LpnPI CCDG 8 cut(s) 180, 224, 242, 251, 256, 267, 276, 309
Lsp1109I GCAGC 1 cut(s) 314
LweI GCATC 1 cut(s) 119
MaeII ACGT 2 cut(s) 26, 281
MalI GATC 1 cut(s) 76
MboI GATC 1 cut(s) 74
MluCI AATT 2 cut(s) 106, 153
MnlI CCTC 4 cut(s) 77, 209, 224, 269
MroNI GCCGGC 1 cut(s) 242
MseI TTAA 1 cut(s) 38
MslI CAYNNNNRTG 1 cut(s) 221
MspA1I CMGCKG 1 cut(s) 323
MspI CCGG 4 cut(s) 167, 229, 243, 254
MspR9I CCNGG 3 cut(s) 230, 239, 254
MvaI CCWGG 1 cut(s) 239
MwoI GCNNNNNNNGC 1 cut(s) 239
NaeI GCCGGC 1 cut(s) 244
NciI CCSGG 2 cut(s) 230, 254
NdeII GATC 1 cut(s) 74
NgoMIV GCCGGC 1 cut(s) 242
NlaIII CATG 1 cut(s) 337
PdiI GCCGGC 1 cut(s) 244
PkrI GCNGC 1 cut(s) 329
Ple19I CGATCG 1 cut(s) 77
Ppu21I YACGTR 2 cut(s) 27, 282
PshAI GACNNNNGTC 1 cut(s) 305
Psp6I CCWGG 1 cut(s) 237
PspGI CCWGG 1 cut(s) 237
PspPI GGNCC 1 cut(s) 256
PvuI CGATCG 1 cut(s) 77
PvuII CAGCTG 1 cut(s) 323
RsaI GTAC 3 cut(s) 227, 236, 319
RsaNI GTAC 3 cut(s) 226, 235, 318
RseI CAYNNNNRTG 1 cut(s) 221
SaqAI TTAA 1 cut(s) 38
SatI GCNGC 1 cut(s) 328
Sau3AI GATC 1 cut(s) 74
Sau96I GGNCC 1 cut(s) 256
ScrFI CCNGG 3 cut(s) 230, 239, 254
SetI ASST 8 cut(s) 20, 29, 69, 85, 201, 216, 284, 325
SfaNI GCATC 1 cut(s) 119
SinI GGWCC 1 cut(s) 256
SmiMI CAYNNNNRTG 1 cut(s) 221
Sse9I AATT 2 cut(s) 106, 153
StyD4I CCNGG 3 cut(s) 228, 237, 252
TaiI ACGT 2 cut(s) 29, 284
TaqI TCGA 3 cut(s) 73, 77, 85
TasI AATT 2 cut(s) 106, 153
TatI WGTACW 1 cut(s) 317
Tru1I TTAA 1 cut(s) 38
Tru9I TTAA 1 cut(s) 38
TseI GCWGC 1 cut(s) 327
TspDTI ATGAA 1 cut(s) 163
VpaK11BI GGWCC 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.