Rh2DG633200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0014779
Physical Location & Seq
Forward (+)
86205193 .. 86205989
797 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG633200.1

Sequence Viewer

Length: 498 bp
ATGGCAGACACTAAAACAGCCCTCCCTACCAGCAACACCATTTGCCACCCTCATCCTACAGATAGTGTTCAATTTACTATTAGCTTGCCGTCCATTGTGTTCATTAACCTCACAATAACAACCTTCACAACCATGTACCGCGCGCAGCAGCACCACGACACCACCTTGCTAGCTTTCCTCGCATTCGTCTACGCCTCTTATTTCATCCTCCATAACTGTGTGCAAGTGTACAGTCGACTTCCCAAGGGCGAAAAATCGGCGAAGAAAGAGCTGCTGAGGTTCACCCTCTGGTTTTTGCCAACACTAGTCCTGCTGGGATTTGCAGCTGAGTTTGGGACTTTCATGAACGTGACTGTGGTTGTGCTCATGTACTGTCTCGCCATTACTAGCAGCTTGTTGCTGTTCTATGTCCACTACATTTATGAGGATCAAAAGGGACATGATCAGATGAGTAACAGCAAGCATGATCATGTACCAATTGCCCAGAACATTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

18.78

Weight (kDa)

7.12

Isoelectric Point (pI)

36.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6490 PF20100 37 - 137 6.4e-07 Family of unknown function (DUF6490)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 189, 235
AccII CGCG 2 cut(s) 141, 143
AciI CCGC 1 cut(s) 139
AclWI GGATC 1 cut(s) 435
AfaI GTAC 4 cut(s) 137, 230, 371, 474
AgsI TTSAA 1 cut(s) 71
AhlI ACTAGT 1 cut(s) 304
AluBI AGCT 5 cut(s) 84, 173, 271, 326, 393
AluI AGCT 5 cut(s) 84, 173, 271, 326, 393
Alw21I GWGCWC 1 cut(s) 366
Alw26I GTCTC 1 cut(s) 380
AlwI GGATC 1 cut(s) 435
ApeKI GCWGC 5 cut(s) 145, 148, 271, 323, 390
AspLEI GCGC 2 cut(s) 143, 145
AsuHPI GGTGA 1 cut(s) 274
AsuNHI GCTAGC 1 cut(s) 169
Bbv12I GWGCWC 1 cut(s) 366
BbvCI CCTCAGC 1 cut(s) 275
BbvI GCAGC 5 cut(s) 157, 160, 258, 335, 402
BceAI ACGGC 1 cut(s) 73
BclI TGATCA 2 cut(s) 442, 466
BcoDI GTCTC 1 cut(s) 380
BcuI ACTAGT 1 cut(s) 304
BfaI CTAG 3 cut(s) 170, 305, 387
BfmI CTRYAG 1 cut(s) 57
BisI GCNGC 5 cut(s) 146, 149, 272, 324, 391
BlsI GCNGC 5 cut(s) 147, 150, 273, 325, 392
BmtI GCTAGC 1 cut(s) 173
Bpu10I CCTNAGC 1 cut(s) 275
BsaJI CCNNGG 1 cut(s) 243
BseDI CCNNGG 1 cut(s) 243
BseGI GGATG 2 cut(s) 52, 204
BseMII CTCAG 2 cut(s) 266, 318
BsePI GCGCGC 1 cut(s) 141
BseXI GCAGC 5 cut(s) 157, 160, 258, 335, 402
BseYI CCCAGC 1 cut(s) 313
Bsh1236I CGCG 2 cut(s) 141, 143
BsiHKAI GWGCWC 1 cut(s) 366
BslFI GGGAC 2 cut(s) 349, 450
BsmAI GTCTC 1 cut(s) 380
BsmFI GGGAC 2 cut(s) 349, 450
BsmI GAATGC 1 cut(s) 182
Bsp1286I GDGCHC 1 cut(s) 366
Bsp1407I TGTACA 1 cut(s) 228
Bsp143I GATC 3 cut(s) 427, 442, 466
BspACI CCGC 1 cut(s) 139
BspCNI CTCAG 2 cut(s) 267, 319
BspFNI CGCG 2 cut(s) 141, 143
BspHI TCATGA 1 cut(s) 342
BspOI GCTAGC 1 cut(s) 173
BspPI GGATC 1 cut(s) 435
BsrGI TGTACA 1 cut(s) 228
BssECI CCNNGG 1 cut(s) 243
BssHII GCGCGC 1 cut(s) 141
BssMI GATC 3 cut(s) 427, 442, 466
BssT1I CCWWGG 1 cut(s) 243
Bst4CI ACNGT 4 cut(s) 218, 233, 355, 374
BstAUI TGTACA 1 cut(s) 228
BstC8I GCNNGC 4 cut(s) 86, 143, 171, 461
BstDEI CTNAG 2 cut(s) 275, 327
BstF5I GGATG 2 cut(s) 52, 204
BstFNI CGCG 2 cut(s) 141, 143
BstHHI GCGC 2 cut(s) 143, 145
BstKTI GATC 3 cut(s) 430, 445, 469
BstMAI GTCTC 1 cut(s) 380
BstMBI GATC 3 cut(s) 427, 442, 466
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstSFI CTRYAG 1 cut(s) 57
BstUI CGCG 2 cut(s) 141, 143
BstV1I GCAGC 5 cut(s) 157, 160, 258, 335, 402
BtsCI GGATG 2 cut(s) 52, 204
Cac8I GCNNGC 4 cut(s) 86, 143, 171, 461
CciI TCATGA 1 cut(s) 342
CfoI GCGC 2 cut(s) 143, 145
Csp6I GTAC 4 cut(s) 136, 229, 370, 473
CviAII CATG 6 cut(s) 133, 343, 367, 440, 464, 470
CviJI RGCY 6 cut(s) 20, 84, 173, 271, 326, 393
CviKI_1 RGCY 6 cut(s) 20, 84, 173, 271, 326, 393
CviQI GTAC 4 cut(s) 136, 229, 370, 473
DdeI CTNAG 2 cut(s) 275, 327
DpnI GATC 3 cut(s) 429, 444, 468
DpnII GATC 3 cut(s) 427, 442, 466
Eco130I CCWWGG 1 cut(s) 243
EcoT14I CCWWGG 1 cut(s) 243
ErhI CCWWGG 1 cut(s) 243
FaeI CATG 6 cut(s) 136, 346, 370, 443, 467, 473
FaiI YATR 9 cut(s) 134, 213, 344, 368, 408, 423, 441, 465, 471
FaqI GGGAC 2 cut(s) 349, 450
FatI CATG 6 cut(s) 132, 342, 366, 439, 463, 469
FbaI TGATCA 2 cut(s) 442, 466
FblI GTMKAC 2 cut(s) 189, 235
Fnu4HI GCNGC 5 cut(s) 146, 149, 272, 324, 391
FokI GGATG 2 cut(s) 39, 191
Fsp4HI GCNGC 5 cut(s) 146, 149, 272, 324, 391
FspBI CTAG 3 cut(s) 170, 305, 387
GlaI GCGC 2 cut(s) 142, 144
GluI GCNGC 5 cut(s) 146, 149, 272, 324, 391
GsaI CCCAGC 1 cut(s) 317
HhaI GCGC 2 cut(s) 143, 145
Hin1II CATG 6 cut(s) 136, 346, 370, 443, 467, 473
Hin6I GCGC 2 cut(s) 141, 143
HinP1I GCGC 2 cut(s) 141, 143
HincII GTYRAC 1 cut(s) 236
HindII GTYRAC 1 cut(s) 236
HphI GGTGA 1 cut(s) 274
Hpy166II GTNNAC 5 cut(s) 190, 229, 236, 282, 412
Hpy188I TCNGA 1 cut(s) 447
Hpy188III TCNNGA 1 cut(s) 343
Hpy8I GTNNAC 5 cut(s) 190, 229, 236, 282, 412
HpyAV CCTTC 1 cut(s) 133
HpyCH4III ACNGT 4 cut(s) 218, 233, 355, 374
HpyCH4IV ACGT 1 cut(s) 348
HpyCH4V TGCA 2 cut(s) 223, 323
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
HpyF3I CTNAG 2 cut(s) 275, 327
HpySE526I ACGT 1 cut(s) 348
Hsp92II CATG 6 cut(s) 136, 346, 370, 443, 467, 473
HspAI GCGC 2 cut(s) 141, 143
Ksp22I TGATCA 2 cut(s) 442, 466
Kzo9I GATC 3 cut(s) 427, 442, 466
LpnPI CCDG 4 cut(s) 43, 274, 299, 323
Lsp1109I GCAGC 5 cut(s) 157, 160, 258, 335, 402
MaeI CTAG 3 cut(s) 170, 305, 387
MaeII ACGT 1 cut(s) 348
MaeIII GTNAC 2 cut(s) 349, 452
MalI GATC 3 cut(s) 429, 444, 468
MboI GATC 3 cut(s) 427, 442, 466
MboII GAAGA 1 cut(s) 274
MfeI CAATTG 1 cut(s) 477
MhlI GDGCHC 1 cut(s) 366
MluCI AATT 2 cut(s) 71, 477
MnlI CCTC 9 cut(s) 32, 60, 119, 188, 205, 218, 270, 296, 418
MseI TTAA 1 cut(s) 105
MslI CAYNNNNRTG 4 cut(s) 131, 216, 347, 468
MspA1I CMGCKG 1 cut(s) 326
MunI CAATTG 1 cut(s) 477
Mva1269I GAATGC 1 cut(s) 182
MvnI CGCG 2 cut(s) 141, 143
MwoI GCNNNNNNNGC 1 cut(s) 179
NdeII GATC 3 cut(s) 427, 442, 466
NheI GCTAGC 1 cut(s) 169
NlaIII CATG 6 cut(s) 136, 346, 370, 443, 467, 473
NmuCI GTSAC 1 cut(s) 349
PagI TCATGA 1 cut(s) 342
PauI GCGCGC 1 cut(s) 141
PctI GAATGC 1 cut(s) 182
PkrI GCNGC 5 cut(s) 147, 150, 273, 325, 392
PspFI CCCAGC 1 cut(s) 313
PteI GCGCGC 1 cut(s) 141
PvuII CAGCTG 1 cut(s) 326
RsaI GTAC 4 cut(s) 137, 230, 371, 474
RsaNI GTAC 4 cut(s) 136, 229, 370, 473
RseI CAYNNNNRTG 4 cut(s) 131, 216, 347, 468
SalI GTCGAC 1 cut(s) 234
SaqAI TTAA 1 cut(s) 105
SatI GCNGC 5 cut(s) 146, 149, 272, 324, 391
Sau3AI GATC 3 cut(s) 427, 442, 466
SduI GDGCHC 1 cut(s) 366
SfcI CTRYAG 1 cut(s) 57
SmiMI CAYNNNNRTG 4 cut(s) 131, 216, 347, 468
SpeI ACTAGT 1 cut(s) 304
Sse9I AATT 2 cut(s) 71, 477
SsiI CCGC 1 cut(s) 139
SspMI CTAG 3 cut(s) 170, 305, 387
StyI CCWWGG 1 cut(s) 243
TaaI ACNGT 4 cut(s) 218, 233, 355, 374
TaiI ACGT 1 cut(s) 351
TaqI TCGA 1 cut(s) 235
TasI AATT 2 cut(s) 71, 477
TatI WGTACW 2 cut(s) 228, 369
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TseFI GTSAC 1 cut(s) 349
TseI GCWGC 5 cut(s) 145, 148, 271, 323, 390
Tsp45I GTSAC 1 cut(s) 349
TspDTI ATGAA 4 cut(s) 91, 193, 331, 359
XmiI GTMKAC 2 cut(s) 189, 235
XspI CTAG 3 cut(s) 170, 305, 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.