RLG00000021839

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0014779
Physical Location & Seq
Forward (+)
78728572 .. 78729069
498 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021839

Sequence Viewer

Length: 498 bp
ATGGCAGACACTAAAACAGCCCTCCCTACCAGCAACACCAACTGCCACCCTCGTCCTACAGATACTGTTCAATTTACTATTAGTTTGCCGTCCATTGTGTTCATTAACCTCACAATAACAACCTTCACAACCATGTACCGTGCGCAGCAGCACCACGACACCACCTTGCTAGCTTTCCTCGCATTCGTCTACGCCTCTTATTTCATCCTCCATAACTGTGTACAAGTGTACAGTCGAATTCCCAAGGGCGAAAAATCGGCTAAGAAAGAGCTGCTGAGGTTCACCCTGTGGTTTTTGCCAACACTAGTCCTGCTGGGATTTGCAGCTGAGTTTGGGACTTTCATGAACGTGACTGTGGTTGTGCTTATGTACTGTCTCGCCATTGCTAGCAGCTTGTTGCTGTTCTATGTCCACTACATTTATGATGATCAAAAGGGACATGATCAGAAGAGTAACAGCAAGCATGATCATGTACCAATTGCCCAGAACATTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

18.77

Weight (kDa)

8.43

Isoelectric Point (pI)

31.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6490 PF20100 37 - 139 1.1e-07 Family of unknown function (DUF6490)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 144
AccI GTMKAC 1 cut(s) 189
AcsI RAATTY 1 cut(s) 237
AdeI CACNNNGTG 1 cut(s) 288
AfaI GTAC 5 cut(s) 137, 222, 230, 371, 474
AgsI TTSAA 1 cut(s) 71
AhlI ACTAGT 1 cut(s) 304
AluBI AGCT 4 cut(s) 173, 271, 326, 393
AluI AGCT 4 cut(s) 173, 271, 326, 393
Alw26I GTCTC 1 cut(s) 380
AlwNI CAGNNNCTG 1 cut(s) 65
ApeKI GCWGC 5 cut(s) 145, 148, 271, 323, 390
ApoI RAATTY 1 cut(s) 237
AspLEI GCGC 1 cut(s) 145
AsuHPI GGTGA 1 cut(s) 274
AsuNHI GCTAGC 2 cut(s) 169, 386
BbvCI CCTCAGC 1 cut(s) 275
BbvI GCAGC 5 cut(s) 157, 160, 258, 335, 402
BceAI ACGGC 1 cut(s) 73
BclI TGATCA 3 cut(s) 427, 442, 466
BcoDI GTCTC 1 cut(s) 380
BcuI ACTAGT 1 cut(s) 304
BfaI CTAG 3 cut(s) 170, 305, 387
BfmI CTRYAG 1 cut(s) 57
BisI GCNGC 5 cut(s) 146, 149, 272, 324, 391
BlsI GCNGC 5 cut(s) 147, 150, 273, 325, 392
BmtI GCTAGC 2 cut(s) 173, 390
Bpu10I CCTNAGC 1 cut(s) 275
BsaJI CCNNGG 1 cut(s) 243
Bse3DI GCAATG 1 cut(s) 381
BseDI CCNNGG 1 cut(s) 243
BseGI GGATG 1 cut(s) 204
BseMI GCAATG 1 cut(s) 381
BseMII CTCAG 2 cut(s) 266, 318
BseXI GCAGC 5 cut(s) 157, 160, 258, 335, 402
BseYI CCCAGC 1 cut(s) 313
BslFI GGGAC 2 cut(s) 349, 450
BsmAI GTCTC 1 cut(s) 380
BsmFI GGGAC 2 cut(s) 349, 450
BsmI GAATGC 1 cut(s) 182
Bsp1407I TGTACA 2 cut(s) 220, 228
Bsp143I GATC 3 cut(s) 427, 442, 466
BspCNI CTCAG 2 cut(s) 267, 319
BspHI TCATGA 1 cut(s) 342
BspOI GCTAGC 2 cut(s) 173, 390
BsrDI GCAATG 1 cut(s) 381
BsrGI TGTACA 2 cut(s) 220, 228
BssECI CCNNGG 1 cut(s) 243
BssMI GATC 3 cut(s) 427, 442, 466
BssT1I CCWWGG 1 cut(s) 243
Bst4CI ACNGT 6 cut(s) 67, 140, 218, 233, 355, 374
Bst6I CTCTTC 1 cut(s) 443
BstAUI TGTACA 2 cut(s) 220, 228
BstC8I GCNNGC 3 cut(s) 171, 388, 461
BstDEI CTNAG 3 cut(s) 261, 275, 327
BstF5I GGATG 1 cut(s) 204
BstHHI GCGC 1 cut(s) 145
BstKTI GATC 3 cut(s) 430, 445, 469
BstMAI GTCTC 1 cut(s) 380
BstMBI GATC 3 cut(s) 427, 442, 466
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstSFI CTRYAG 1 cut(s) 57
BstV1I GCAGC 5 cut(s) 157, 160, 258, 335, 402
BtsCI GGATG 1 cut(s) 204
Cac8I GCNNGC 3 cut(s) 171, 388, 461
CaiI CAGNNNCTG 1 cut(s) 65
CciI TCATGA 1 cut(s) 342
CfoI GCGC 1 cut(s) 145
Csp6I GTAC 5 cut(s) 136, 221, 229, 370, 473
CviAII CATG 5 cut(s) 133, 343, 440, 464, 470
CviJI RGCY 6 cut(s) 20, 173, 260, 271, 326, 393
CviKI_1 RGCY 6 cut(s) 20, 173, 260, 271, 326, 393
CviQI GTAC 5 cut(s) 136, 221, 229, 370, 473
DdeI CTNAG 3 cut(s) 261, 275, 327
DpnI GATC 3 cut(s) 429, 444, 468
DpnII GATC 3 cut(s) 427, 442, 466
DraIII CACNNNGTG 1 cut(s) 288
Eam1104I CTCTTC 1 cut(s) 443
EarI CTCTTC 1 cut(s) 443
Eco130I CCWWGG 1 cut(s) 243
EcoRI GAATTC 1 cut(s) 237
EcoT14I CCWWGG 1 cut(s) 243
ErhI CCWWGG 1 cut(s) 243
FaeI CATG 5 cut(s) 136, 346, 443, 467, 473
FaiI YATR 9 cut(s) 134, 213, 344, 368, 408, 423, 441, 465, 471
FaqI GGGAC 2 cut(s) 349, 450
FatI CATG 5 cut(s) 132, 342, 439, 463, 469
FbaI TGATCA 3 cut(s) 427, 442, 466
FblI GTMKAC 1 cut(s) 189
Fnu4HI GCNGC 5 cut(s) 146, 149, 272, 324, 391
FokI GGATG 1 cut(s) 191
Fsp4HI GCNGC 5 cut(s) 146, 149, 272, 324, 391
FspBI CTAG 3 cut(s) 170, 305, 387
FspI TGCGCA 1 cut(s) 144
GlaI GCGC 1 cut(s) 144
GluI GCNGC 5 cut(s) 146, 149, 272, 324, 391
GsaI CCCAGC 1 cut(s) 317
HhaI GCGC 1 cut(s) 145
Hin1II CATG 5 cut(s) 136, 346, 443, 467, 473
Hin6I GCGC 1 cut(s) 143
HinP1I GCGC 1 cut(s) 143
HphI GGTGA 1 cut(s) 274
Hpy166II GTNNAC 5 cut(s) 190, 221, 229, 282, 412
Hpy188I TCNGA 1 cut(s) 447
Hpy188III TCNNGA 1 cut(s) 343
Hpy8I GTNNAC 5 cut(s) 190, 221, 229, 282, 412
HpyAV CCTTC 1 cut(s) 133
HpyCH4III ACNGT 6 cut(s) 67, 140, 218, 233, 355, 374
HpyCH4IV ACGT 1 cut(s) 348
HpyCH4V TGCA 1 cut(s) 323
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
HpyF3I CTNAG 3 cut(s) 261, 275, 327
HpySE526I ACGT 1 cut(s) 348
Hsp92II CATG 5 cut(s) 136, 346, 443, 467, 473
HspAI GCGC 1 cut(s) 143
Ksp22I TGATCA 3 cut(s) 427, 442, 466
Kzo9I GATC 3 cut(s) 427, 442, 466
LpnPI CCDG 4 cut(s) 43, 299, 299, 323
Lsp1109I GCAGC 5 cut(s) 157, 160, 258, 335, 402
MaeI CTAG 3 cut(s) 170, 305, 387
MaeII ACGT 1 cut(s) 348
MaeIII GTNAC 2 cut(s) 349, 452
MalI GATC 3 cut(s) 429, 444, 468
MboI GATC 3 cut(s) 427, 442, 466
MboII GAAGA 1 cut(s) 460
MfeI CAATTG 1 cut(s) 477
MluCI AATT 3 cut(s) 71, 237, 477
MnlI CCTC 7 cut(s) 32, 60, 119, 188, 205, 218, 270
MseI TTAA 1 cut(s) 105
MslI CAYNNNNRTG 4 cut(s) 131, 216, 347, 468
MspA1I CMGCKG 1 cut(s) 326
MunI CAATTG 1 cut(s) 477
Mva1269I GAATGC 1 cut(s) 182
MwoI GCNNNNNNNGC 1 cut(s) 179
NdeII GATC 3 cut(s) 427, 442, 466
NheI GCTAGC 2 cut(s) 169, 386
NlaIII CATG 5 cut(s) 136, 346, 443, 467, 473
NmuCI GTSAC 1 cut(s) 349
NsbI TGCGCA 1 cut(s) 144
PagI TCATGA 1 cut(s) 342
PctI GAATGC 1 cut(s) 182
PkrI GCNGC 5 cut(s) 147, 150, 273, 325, 392
PspFI CCCAGC 1 cut(s) 313
PstNI CAGNNNCTG 1 cut(s) 65
PvuII CAGCTG 1 cut(s) 326
RsaI GTAC 5 cut(s) 137, 222, 230, 371, 474
RsaNI GTAC 5 cut(s) 136, 221, 229, 370, 473
RseI CAYNNNNRTG 4 cut(s) 131, 216, 347, 468
SaqAI TTAA 1 cut(s) 105
SatI GCNGC 5 cut(s) 146, 149, 272, 324, 391
Sau3AI GATC 3 cut(s) 427, 442, 466
SetI ASST 9 cut(s) 111, 125, 167, 175, 273, 281, 328, 351, 395
SfcI CTRYAG 1 cut(s) 57
SmiMI CAYNNNNRTG 4 cut(s) 131, 216, 347, 468
SpeI ACTAGT 1 cut(s) 304
Sse9I AATT 3 cut(s) 71, 237, 477
SspMI CTAG 3 cut(s) 170, 305, 387
StyI CCWWGG 1 cut(s) 243
TaaI ACNGT 6 cut(s) 67, 140, 218, 233, 355, 374
TaiI ACGT 1 cut(s) 351
TaqI TCGA 1 cut(s) 235
TasI AATT 3 cut(s) 71, 237, 477
TatI WGTACW 3 cut(s) 220, 228, 369
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TseFI GTSAC 1 cut(s) 349
TseI GCWGC 5 cut(s) 145, 148, 271, 323, 390
Tsp45I GTSAC 1 cut(s) 349
TspDTI ATGAA 4 cut(s) 91, 193, 331, 359
XapI RAATTY 1 cut(s) 237
XmiI GTMKAC 1 cut(s) 189
XspI CTAG 3 cut(s) 170, 305, 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.