Rorug02G0537900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0014779
Physical Location & Seq
Reverse (-)
66688464 .. 66689843
1380 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0537900.1

Sequence Viewer

Length: 1380 bp
ATGGCCAAAAGAAAAGAAACAAAAATGTCATCCTCAGCAGCTGCAGAGGCCGTGGCCAATATAGAAGAACTCCTCACGCAGATCCTTGTATCGGTGCCATTACGATCTGTTGCTCGTTTCATGTGCGTCTCCAAGCATTGGTACTCTCTCATCTCCAACCTCCACACCCTCAAAAACCCCAAGATGTCGGCTTTCTTCTCTAGCAAAACCGAAGCCGAGTCCTTCAAGTCCCTCCCACTTGGTAACCCTGAAATCCCATCTGGTTGGAATCCCTTCACAACTTTTAACGATTCCTTCAATGACGGCTCCAGGTTGAAGATTATTCAGTCCTGCAACGGCCTCTTTCTCTGCATTCCCGAGAGCAGAGAACATCGTGATTTCGTACCTAGAAAACAACATGATCTCGTATATGTTGTCAATCCCACAACCAACAAATTCTTGGCTCTTTCTTCTCCAACGGCTAGGTTTAGAAGTTTTGTACGTTATGCTTTGGCTTTTGAACCTTCCAAATCTCCTCATTACACGTTGGTCTGCGTGACTACCCACTATCGCTATTCCTTCGTGGAAGGTGAAGGTAAGTACCACAAAATACATATATATTCGTCAAAGTCTGGAAAGTGGAAACATGTTATTGATATCCCTTTCTTCCAGAGCCTTTATGACCGATGCTGTCACCCTGATCTCAAGAAATGGCACATCGACTTCGACCGTAGGAGCAGGGAAGGCTCAGTATACTGCAACGGCGCAGTTCATTGGATAAGAGAAAGAAATGCAGCAGAATTACCATTCTGCTGTGAAGCTGGTAAATTCTTTAGACAAGAAGCTGATGTGTTGCATTACTTTGACATAGGTGAAGAACGTTTGCGGCTTGTGGCTGCTACTCCTCCTGTTCCCTTGGTTGTAGAAAACATGCCGGTGGAGGATATTGGTTCTGACCTCAAGATTCCCATTGAGTTTCCGATATTGGTTCATAGATACTTTGGGGAGTGCGGTGGCCGTTTGTACTTGATTGACATTTATAAGCATTGTCACACTCAATTTGATGTGATGGAGATGGAGAGGGACTACTCTGGTTGGTTTGTCAAGTACCATGTTGATCTCAATCCAGTAGTCATGGCTCTTCCTCAACATGATTTGAATCCTTTTGTTATTTTGTGCCTTTCTCGAGAGAAGGAAAAGGATGATGACGAGTTCGGGGATTCTTCAACTATTCTGCTGTTGCATATGCCCGGTAAGGTCATATCATATAATCTTATGAATAAGAACTTCAAGACATCTATTGAGTTGGCCAATAAAAATCTTTATCTAGCCATAGAGGATACTTCTTTCCGGGATGAAGTTGATAATTATCCTTACATGGAGAGTCTGGCTTGTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

459

Amino Acids

52.99

Weight (kDa)

6.68

Isoelectric Point (pI)

57.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 22 - 55 3.5e-06 F-box domain
FBA_1 PF07734 104 - 291 2.2e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1020
AccB1I GGYRCC 1 cut(s) 94
AccB7I CCANNNNNTGG 1 cut(s) 138
AccI GTMKAC 1 cut(s) 732
AciI CCGC 2 cut(s) 865, 990
AclI AACGTT 1 cut(s) 859
AclWI GGATC 1 cut(s) 76
AcoI YGGCCR 4 cut(s) 3, 54, 994, 1287
AcsI RAATTY 2 cut(s) 434, 806
AfaI GTAC 6 cut(s) 143, 384, 480, 581, 1004, 1088
AfiI CCNNNNNNNGG 2 cut(s) 91, 138
AflIII ACRYGT 2 cut(s) 522, 625
AgsI TTSAA 7 cut(s) 226, 298, 316, 500, 1138, 1206, 1270
AjnI CCWGG 1 cut(s) 308
AluBI AGCT 3 cut(s) 41, 800, 824
AluI AGCT 3 cut(s) 41, 800, 824
Alw26I GTCTC 1 cut(s) 133
AlwI GGATC 1 cut(s) 76
AlwNI CAGNNNCTG 1 cut(s) 41
Ama87I CYCGRG 2 cut(s) 356, 1164
AoxI GGCC 6 cut(s) 3, 48, 54, 337, 994, 1287
ApeKI GCWGC 4 cut(s) 38, 41, 773, 875
ApoI RAATTY 2 cut(s) 434, 806
Asp700I GAANNNNTTC 1 cut(s) 272
AspLEI GCGC 1 cut(s) 746
AsuC2I CCSGG 2 cut(s) 1230, 1331
AsuHPI GGTGA 3 cut(s) 581, 665, 863
AvaI CYCGRG 2 cut(s) 356, 1164
BalI TGGCCA 3 cut(s) 5, 56, 1289
BanI GGYRCC 1 cut(s) 94
BbvCI CCTCAGC 1 cut(s) 34
BbvI GCAGC 4 cut(s) 28, 50, 785, 862
BccI CCATC 3 cut(s) 265, 1042, 1048
BceAI ACGGC 6 cut(s) 35, 319, 352, 474, 757, 981
BciT130I CCWGG 1 cut(s) 310
BciVI GTATCC 1 cut(s) 1312
BcnI CCSGG 2 cut(s) 1230, 1331
BcoDI GTCTC 1 cut(s) 133
BfaI CTAG 4 cut(s) 201, 387, 462, 1307
BfmI CTRYAG 1 cut(s) 42
BfuI GTATCC 1 cut(s) 1312
BisI GCNGC 5 cut(s) 39, 42, 774, 866, 876
BlsI GCNGC 5 cut(s) 40, 43, 775, 867, 877
Bme1390I CCNGG 3 cut(s) 310, 1230, 1331
BmeT110I CYCGRG 2 cut(s) 356, 1164
BmiI GGNNCC 2 cut(s) 96, 307
BmrFI CCNGG 3 cut(s) 310, 1230, 1331
BmsI GCATC 1 cut(s) 656
BpmI CTGGAG 1 cut(s) 292
Bpu10I CCTNAGC 1 cut(s) 34
BpuEI CTTGAG 2 cut(s) 668, 923
BpuMI CCSGG 2 cut(s) 1230, 1331
BsaBI GATNNNNATC 3 cut(s) 1101, 1137, 1347
BsaJI CCNNGG 2 cut(s) 51, 894
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 138
Bse118I RCCGGY 1 cut(s) 913
Bse1I ACTGG 1 cut(s) 1106
Bse8I GATNNNNATC 3 cut(s) 1101, 1137, 1347
BseBI CCWGG 1 cut(s) 310
BseDI CCNNGG 2 cut(s) 51, 894
BseGI GGATG 3 cut(s) 29, 1186, 1339
BseJI GATNNNNATC 3 cut(s) 1101, 1137, 1347
BseLI CCNNNNNNNGG 2 cut(s) 91, 138
BseMII CTCAG 2 cut(s) 48, 741
BseNI ACTGG 1 cut(s) 1106
BseRI GAGGAG 3 cut(s) 62, 504, 873
BseXI GCAGC 4 cut(s) 28, 50, 785, 862
Bsh1285I CGRYCG 1 cut(s) 709
BshFI GGCC 6 cut(s) 5, 50, 56, 339, 996, 1289
BshNI GGYRCC 1 cut(s) 94
BsiEI CGRYCG 1 cut(s) 709
BsiHKCI CYCGRG 2 cut(s) 356, 1164
BsiSI CCGG 3 cut(s) 914, 1230, 1330
BslFI GGGAC 2 cut(s) 214, 1076
BslI CCNNNNNNNGG 2 cut(s) 91, 138
BsmAI GTCTC 1 cut(s) 133
BsmBI CGTCTC 1 cut(s) 133
BsmFI GGGAC 2 cut(s) 214, 1076
BsmI GAATGC 1 cut(s) 351
BsnI GGCC 6 cut(s) 5, 50, 56, 339, 996, 1289
BsoBI CYCGRG 2 cut(s) 356, 1164
Bsp143I GATC 5 cut(s) 81, 104, 400, 679, 1096
BspACI CCGC 2 cut(s) 865, 990
BspANI GGCC 6 cut(s) 5, 50, 56, 339, 996, 1289
BspCNI CTCAG 2 cut(s) 47, 740
BspLI GGNNCC 2 cut(s) 96, 307
BspMAI CTGCAG 1 cut(s) 46
BspPI GGATC 1 cut(s) 76
BspQI GCTCTTC 1 cut(s) 1125
BspT107I GGYRCC 1 cut(s) 94
BsrFI RCCGGY 1 cut(s) 913
BsrI ACTGG 1 cut(s) 1106
BssAI RCCGGY 1 cut(s) 913
BssECI CCNNGG 2 cut(s) 51, 894
BssMI GATC 5 cut(s) 81, 104, 400, 679, 1096
BssNAI GTATAC 1 cut(s) 733
BssT1I CCWWGG 1 cut(s) 894
Bst1107I GTATAC 1 cut(s) 733
Bst2UI CCWGG 1 cut(s) 310
Bst4CI ACNGT 1 cut(s) 710
Bst6I CTCTTC 1 cut(s) 1125
BstDEI CTNAG 2 cut(s) 34, 727
BstDSI CCRYGG 1 cut(s) 51
BstEII GGTNACC 1 cut(s) 242
BstF5I GGATG 3 cut(s) 29, 1186, 1339
BstHHI GCGC 1 cut(s) 746
BstKTI GATC 5 cut(s) 84, 107, 403, 682, 1099
BstMAI GTCTC 1 cut(s) 133
BstMBI GATC 5 cut(s) 81, 104, 400, 679, 1096
BstMCI CGRYCG 1 cut(s) 709
BstMWI GCNNNNNNNGC 2 cut(s) 47, 723
BstNI CCWGG 1 cut(s) 310
BstNSI RCATGY 2 cut(s) 629, 913
BstPI GGTNACC 1 cut(s) 242
BstSCI CCNGG 3 cut(s) 308, 1228, 1329
BstSFI CTRYAG 1 cut(s) 42
BstV1I GCAGC 4 cut(s) 28, 50, 785, 862
BstX2I RGATCY 1 cut(s) 81
BstXI CCANNNNNNTGG 1 cut(s) 264
BstYI RGATCY 1 cut(s) 81
BstZ17I GTATAC 1 cut(s) 733
BsuI GTATCC 1 cut(s) 1312
BsuRI GGCC 6 cut(s) 5, 50, 56, 339, 996, 1289
BtgI CCRYGG 1 cut(s) 51
BtsCI GGATG 3 cut(s) 29, 1186, 1339
CaiI CAGNNNCTG 1 cut(s) 41
CfoI GCGC 1 cut(s) 746
Cfr10I RCCGGY 1 cut(s) 913
CseI GACGC 1 cut(s) 115
Csp6I GTAC 6 cut(s) 142, 383, 479, 580, 1003, 1087
CviAII CATG 8 cut(s) 121, 398, 626, 910, 1091, 1114, 1130, 1357
CviQI GTAC 6 cut(s) 142, 383, 479, 580, 1003, 1087
DdeI CTNAG 2 cut(s) 34, 727
DpnI GATC 5 cut(s) 83, 106, 402, 681, 1098
DpnII GATC 5 cut(s) 81, 104, 400, 679, 1096
EaeI YGGCCR 4 cut(s) 3, 54, 994, 1287
Eam1104I CTCTTC 1 cut(s) 1125
EarI CTCTTC 1 cut(s) 1125
Eco130I CCWWGG 1 cut(s) 894
Eco32I GATATC 1 cut(s) 637
Eco88I CYCGRG 2 cut(s) 356, 1164
Eco91I GGTNACC 1 cut(s) 242
EcoO65I GGTNACC 1 cut(s) 242
EcoRII CCWGG 1 cut(s) 308
EcoRV GATATC 1 cut(s) 637
EcoT14I CCWWGG 1 cut(s) 894
ErhI CCWWGG 1 cut(s) 894
Esp3I CGTCTC 1 cut(s) 133
FaeI CATG 8 cut(s) 124, 401, 629, 913, 1094, 1117, 1133, 1360
FaqI GGGAC 2 cut(s) 214, 1076
FatI CATG 8 cut(s) 120, 397, 625, 909, 1090, 1113, 1129, 1356
FauNDI CATATG 1 cut(s) 1224
FblI GTMKAC 1 cut(s) 732
Fnu4HI GCNGC 5 cut(s) 39, 42, 774, 866, 876
FokI GGATG 3 cut(s) 16, 1193, 1346
Fsp4HI GCNGC 5 cut(s) 39, 42, 774, 866, 876
FspBI CTAG 4 cut(s) 201, 387, 462, 1307
GlaI GCGC 1 cut(s) 745
GluI GCNGC 5 cut(s) 39, 42, 774, 866, 876
GsuI CTGGAG 1 cut(s) 292
HaeIII GGCC 6 cut(s) 5, 50, 56, 339, 996, 1289
HapII CCGG 3 cut(s) 914, 1230, 1330
HgaI GACGC 1 cut(s) 115
HhaI GCGC 1 cut(s) 746
Hin1II CATG 8 cut(s) 124, 401, 629, 913, 1094, 1117, 1133, 1360
Hin6I GCGC 1 cut(s) 744
HinP1I GCGC 1 cut(s) 744
HinfI GANTC 7 cut(s) 218, 268, 290, 943, 1138, 1199, 1363
HpaII CCGG 3 cut(s) 914, 1230, 1330
HphI GGTGA 3 cut(s) 581, 665, 863
Hpy166II GTNNAC 1 cut(s) 733
Hpy188I TCNGA 2 cut(s) 934, 960
Hpy188III TCNNGA 9 cut(s) 356, 374, 612, 649, 685, 940, 1164, 1166, 1270
Hpy8I GTNNAC 1 cut(s) 733
HpyAV CCTTC 9 cut(s) 232, 283, 304, 513, 560, 566, 568, 716, 1165
HpyCH4III ACNGT 1 cut(s) 710
HpyCH4IV ACGT 3 cut(s) 481, 524, 859
HpyCH4V TGCA 7 cut(s) 44, 333, 351, 738, 773, 835, 1222
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 723
HpyF3I CTNAG 2 cut(s) 34, 727
HpySE526I ACGT 3 cut(s) 481, 524, 859
Hsp92II CATG 8 cut(s) 124, 401, 629, 913, 1094, 1117, 1133, 1360
HspAI GCGC 1 cut(s) 744
Kzo9I GATC 5 cut(s) 81, 104, 400, 679, 1096
LguI GCTCTTC 1 cut(s) 1125
LmnI GCTCC 2 cut(s) 311, 714
Lsp1109I GCAGC 4 cut(s) 28, 50, 785, 862
LweI GCATC 1 cut(s) 656
MaeI CTAG 4 cut(s) 201, 387, 462, 1307
MaeII ACGT 3 cut(s) 481, 524, 859
MaeIII GTNAC 4 cut(s) 242, 535, 671, 1028
MalI GATC 5 cut(s) 83, 106, 402, 681, 1098
MboI GATC 5 cut(s) 81, 104, 400, 679, 1096
MboII GAAGA 8 cut(s) 77, 187, 328, 441, 637, 866, 1112, 1194
MflI RGATCY 1 cut(s) 81
MlsI TGGCCA 3 cut(s) 5, 56, 1289
MluCI AATT 5 cut(s) 434, 779, 806, 1037, 1345
MluNI TGGCCA 3 cut(s) 5, 56, 1289
MlyI GAGTC 2 cut(s) 227, 1372
MmeI TCCRAC 3 cut(s) 180, 245, 479
Mox20I TGGCCA 3 cut(s) 5, 56, 1289
MroXI GAANNNNTTC 1 cut(s) 272
MscI TGGCCA 3 cut(s) 5, 56, 1289
MseI TTAA 1 cut(s) 285
MslI CAYNNNNRTG 1 cut(s) 914
Msp20I TGGCCA 3 cut(s) 5, 56, 1289
MspA1I CMGCKG 1 cut(s) 41
MspI CCGG 3 cut(s) 914, 1230, 1330
MspR9I CCNGG 3 cut(s) 310, 1230, 1331
Mva1269I GAATGC 1 cut(s) 351
MvaI CCWGG 1 cut(s) 310
MwoI GCNNNNNNNGC 2 cut(s) 47, 723
NciI CCSGG 2 cut(s) 1230, 1331
NdeI CATATG 1 cut(s) 1224
NdeII GATC 5 cut(s) 81, 104, 400, 679, 1096
NlaIII CATG 8 cut(s) 124, 401, 629, 913, 1094, 1117, 1133, 1360
NlaIV GGNNCC 2 cut(s) 96, 307
NmeAIII GCCGAG 1 cut(s) 241
NmuCI GTSAC 3 cut(s) 535, 671, 1028
NspI RCATGY 2 cut(s) 629, 913
PaeR7I CTCGAG 1 cut(s) 1164
PciI ACATGT 1 cut(s) 625
PciSI GCTCTTC 1 cut(s) 1125
PctI GAATGC 1 cut(s) 351
PdmI GAANNNNTTC 1 cut(s) 272
PfeI GAWTC 5 cut(s) 268, 290, 943, 1138, 1199
PflMI CCANNNNNTGG 1 cut(s) 138
PfoI TCCNGGA 1 cut(s) 1329
PkrI GCNGC 5 cut(s) 40, 43, 775, 867, 877
PleI GAGTC 2 cut(s) 226, 1371
PpsI GAGTC 2 cut(s) 226, 1371
PscI ACATGT 1 cut(s) 625
PsiI TTATAA 1 cut(s) 1020
Psp1406I AACGTT 1 cut(s) 859
Psp6I CCWGG 1 cut(s) 308
PspEI GGTNACC 1 cut(s) 242
PspGI CCWGG 1 cut(s) 308
PspN4I GGNNCC 2 cut(s) 96, 307
PstI CTGCAG 1 cut(s) 46
PstNI CAGNNNCTG 1 cut(s) 41
PsuI RGATCY 1 cut(s) 81
PvuII CAGCTG 1 cut(s) 41
RsaI GTAC 6 cut(s) 143, 384, 480, 581, 1004, 1088
RsaNI GTAC 6 cut(s) 142, 383, 479, 580, 1003, 1087
RseI CAYNNNNRTG 1 cut(s) 914
SapI GCTCTTC 1 cut(s) 1125
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 5 cut(s) 39, 42, 774, 866, 876
Sau3AI GATC 5 cut(s) 81, 104, 400, 679, 1096
SchI GAGTC 2 cut(s) 227, 1372
ScrFI CCNGG 3 cut(s) 310, 1230, 1331
SfaNI GCATC 1 cut(s) 656
SfcI CTRYAG 1 cut(s) 42
Sfr274I CTCGAG 1 cut(s) 1164
SlaI CTCGAG 1 cut(s) 1164
SmiMI CAYNNNNRTG 1 cut(s) 914
SmlI CTYRAG 3 cut(s) 683, 938, 1164
SmoI CTYRAG 3 cut(s) 683, 938, 1164
Sse9I AATT 5 cut(s) 434, 779, 806, 1037, 1345
SsiI CCGC 2 cut(s) 865, 990
SspMI CTAG 4 cut(s) 201, 387, 462, 1307
StyD4I CCNGG 3 cut(s) 308, 1228, 1329
StyI CCWWGG 1 cut(s) 894
TaaI ACNGT 1 cut(s) 710
TaiI ACGT 3 cut(s) 484, 527, 862
TaqI TCGA 3 cut(s) 699, 705, 1165
TaqII GACCGA 1 cut(s) 678
TasI AATT 5 cut(s) 434, 779, 806, 1037, 1345
TatI WGTACW 1 cut(s) 1002
TauI GCSGC 1 cut(s) 868
TfiI GAWTC 5 cut(s) 268, 290, 943, 1138, 1199
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TseFI GTSAC 3 cut(s) 535, 671, 1028
TseI GCWGC 4 cut(s) 38, 41, 773, 875
Tsp45I GTSAC 3 cut(s) 535, 671, 1028
TspDTI ATGAA 5 cut(s) 109, 740, 959, 1271, 1350
Van91I CCANNNNNTGG 1 cut(s) 138
XapI RAATTY 2 cut(s) 434, 806
XceI RCATGY 2 cut(s) 629, 913
XcmI CCANNNNNNNNNTGG 1 cut(s) 436
XhoI CTCGAG 1 cut(s) 1164
XmiI GTMKAC 1 cut(s) 732
XmnI GAANNNNTTC 1 cut(s) 272
XspI CTAG 4 cut(s) 201, 387, 462, 1307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.