RLG00000021841

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0014779
Physical Location & Seq
Forward (+)
78758335 .. 78759635
1301 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021841

Sequence Viewer

Length: 690 bp
ATGGCAAACACAAAAGCAGCTCTCTCTACTGGCAACACCAATCGCCACCCTCCTACTGCTCAATTTACTATTAGCTTGCCGTCCGTTGTGTTCATTAACCTCACGGTAACAACCTTCACAACCATGTACCGCGCGCAACAGCACCACGACACCACCTTGCTCGCTTTCCTTGCATTCGTCTACGCATCCTATTTCATCCTCCATAACTGTGTAGAAGTTTACAGTCGACTGCCCAAGGGCGAAAAGTCGACGAAGAAAGAGCTGCTGAGGTTCACTCTCTGGTTTTTGCCAACTGCAGTGCTGTTGGGTTTTGCAGCTGAGTTTGGGACTTTCATGAACGTGACTGTGGTTGTGCTCATGTACTGTCTCGCCATTGCTAGCAGCTTGTTGCTGTTCTATGTCCACTACATTCATGACGATCAAAAGGGACATGCTTGTCCTTTTCAGAAGAGTAACAACAAGCATGATCATCCTTCATTCACACGCTACACTACTTGTGGTTACCAATTCGTGTGGTCGAGATTCACTTTTGAGGTTTTGCCAACTGTAAACTTGTTGAGCTTTGTAATTAAGCTCGGGACTGGTATGGACATGGTTGTGATTGTGCTACTTATATGTGATGCCATTAGAATTAGCGCCTTGTTCTATGTCGAGTACATCTTCGATGATGATCAAAAGAGATTGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

230

Amino Acids

26.19

Weight (kDa)

8.56

Isoelectric Point (pI)

31.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6490 PF20100 33 - 136 2.6e-06 Family of unknown function (DUF6490)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 435
AccI GTMKAC 3 cut(s) 180, 226, 248
AccII CGCG 2 cut(s) 132, 134
AciI CCGC 1 cut(s) 130
AfaI GTAC 3 cut(s) 128, 362, 656
AluBI AGCT 7 cut(s) 20, 75, 262, 317, 384, 561, 574
AluI AGCT 7 cut(s) 20, 75, 262, 317, 384, 561, 574
Alw21I GWGCWC 1 cut(s) 357
Alw26I GTCTC 1 cut(s) 371
Ama87I CYCGRG 1 cut(s) 575
ApeKI GCWGC 4 cut(s) 17, 262, 314, 381
AspLEI GCGC 3 cut(s) 134, 136, 638
AsuNHI GCTAGC 1 cut(s) 377
AvaI CYCGRG 1 cut(s) 575
Bbv12I GWGCWC 1 cut(s) 357
BbvCI CCTCAGC 1 cut(s) 266
BbvI GCAGC 4 cut(s) 29, 249, 326, 393
BceAI ACGGC 1 cut(s) 64
BclI TGATCA 2 cut(s) 466, 670
BcoDI GTCTC 1 cut(s) 371
BfaI CTAG 2 cut(s) 378, 688
BfmI CTRYAG 1 cut(s) 294
BfoI RGCGCY 1 cut(s) 639
BisI GCNGC 4 cut(s) 18, 263, 315, 382
BlsI GCNGC 4 cut(s) 19, 264, 316, 383
BmeT110I CYCGRG 1 cut(s) 575
BmsI GCATC 2 cut(s) 194, 610
BmtI GCTAGC 1 cut(s) 381
BplI GAGNNNNNCTC 2 cut(s) 259, 291
Bpu10I CCTNAGC 1 cut(s) 266
BsaBI GATNNNNATC 1 cut(s) 669
BsaJI CCNNGG 1 cut(s) 234
Bse1I ACTGG 2 cut(s) 34, 586
Bse3DI GCAATG 1 cut(s) 372
Bse8I GATNNNNATC 1 cut(s) 669
BseDI CCNNGG 1 cut(s) 234
BseGI GGATG 3 cut(s) 185, 195, 469
BseJI GATNNNNATC 1 cut(s) 669
BseMI GCAATG 1 cut(s) 372
BseMII CTCAG 2 cut(s) 257, 309
BseNI ACTGG 2 cut(s) 34, 586
BsePI GCGCGC 1 cut(s) 132
BseXI GCAGC 4 cut(s) 29, 249, 326, 393
Bsh1236I CGCG 2 cut(s) 132, 134
BsiHKAI GWGCWC 1 cut(s) 357
BsiHKCI CYCGRG 1 cut(s) 575
BslFI GGGAC 3 cut(s) 340, 441, 592
BsmAI GTCTC 1 cut(s) 371
BsmFI GGGAC 3 cut(s) 340, 441, 592
BsmI GAATGC 1 cut(s) 173
BsoBI CYCGRG 1 cut(s) 575
Bsp1286I GDGCHC 1 cut(s) 357
Bsp143I GATC 3 cut(s) 418, 466, 670
BspACI CCGC 1 cut(s) 130
BspCNI CTCAG 2 cut(s) 258, 310
BspFNI CGCG 2 cut(s) 132, 134
BspHI TCATGA 2 cut(s) 333, 412
BspMAI CTGCAG 1 cut(s) 298
BspOI GCTAGC 1 cut(s) 381
BsrDI GCAATG 1 cut(s) 372
BsrI ACTGG 2 cut(s) 34, 586
BssECI CCNNGG 1 cut(s) 234
BssHII GCGCGC 1 cut(s) 132
BssMI GATC 3 cut(s) 418, 466, 670
BssT1I CCWWGG 1 cut(s) 234
Bst4CI ACNGT 6 cut(s) 106, 209, 224, 346, 365, 547
Bst6I CTCTTC 1 cut(s) 443
BstC8I GCNNGC 4 cut(s) 77, 134, 162, 379
BstDEI CTNAG 2 cut(s) 266, 318
BstEII GGTNACC 1 cut(s) 500
BstF5I GGATG 3 cut(s) 185, 195, 469
BstFNI CGCG 2 cut(s) 132, 134
BstH2I RGCGCY 1 cut(s) 639
BstHHI GCGC 3 cut(s) 134, 136, 638
BstKTI GATC 3 cut(s) 421, 469, 673
BstMAI GTCTC 1 cut(s) 371
BstMBI GATC 3 cut(s) 418, 466, 670
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstNSI RCATGY 1 cut(s) 434
BstPI GGTNACC 1 cut(s) 500
BstSFI CTRYAG 1 cut(s) 294
BstUI CGCG 2 cut(s) 132, 134
BstV1I GCAGC 4 cut(s) 29, 249, 326, 393
BtsCI GGATG 3 cut(s) 185, 195, 469
BtsI GCAGTG 1 cut(s) 303
BtsIMutI CAGTG 1 cut(s) 303
Cac8I GCNNGC 4 cut(s) 77, 134, 162, 379
CciI TCATGA 2 cut(s) 333, 412
CfoI GCGC 3 cut(s) 134, 136, 638
Csp6I GTAC 3 cut(s) 127, 361, 655
CspCI CAANNNNNGTGG 2 cut(s) 494, 529
CviAII CATG 7 cut(s) 124, 334, 358, 413, 431, 464, 592
CviJI RGCY 7 cut(s) 20, 75, 262, 317, 384, 561, 574
CviKI_1 RGCY 7 cut(s) 20, 75, 262, 317, 384, 561, 574
CviQI GTAC 3 cut(s) 127, 361, 655
DdeI CTNAG 2 cut(s) 266, 318
DpnI GATC 3 cut(s) 420, 468, 672
DpnII GATC 3 cut(s) 418, 466, 670
DrdI GACNNNNNNGTC 1 cut(s) 435
DseDI GACNNNNNNGTC 1 cut(s) 435
Eam1104I CTCTTC 1 cut(s) 443
EarI CTCTTC 1 cut(s) 443
Eco130I CCWWGG 1 cut(s) 234
Eco88I CYCGRG 1 cut(s) 575
Eco91I GGTNACC 1 cut(s) 500
EcoO65I GGTNACC 1 cut(s) 500
EcoT14I CCWWGG 1 cut(s) 234
ErhI CCWWGG 1 cut(s) 234
FaeI CATG 7 cut(s) 127, 337, 361, 416, 434, 467, 595
FaqI GGGAC 3 cut(s) 340, 441, 592
FatI CATG 7 cut(s) 123, 333, 357, 412, 430, 463, 591
FbaI TGATCA 2 cut(s) 466, 670
FblI GTMKAC 3 cut(s) 180, 226, 248
Fnu4HI GCNGC 4 cut(s) 18, 263, 315, 382
FokI GGATG 3 cut(s) 172, 182, 456
Fsp4HI GCNGC 4 cut(s) 18, 263, 315, 382
FspBI CTAG 2 cut(s) 378, 688
GlaI GCGC 3 cut(s) 133, 135, 637
GluI GCNGC 4 cut(s) 18, 263, 315, 382
HaeII RGCGCY 1 cut(s) 639
HhaI GCGC 3 cut(s) 134, 136, 638
Hin1II CATG 7 cut(s) 127, 337, 361, 416, 434, 467, 595
Hin6I GCGC 3 cut(s) 132, 134, 636
HinP1I GCGC 3 cut(s) 132, 134, 636
HincII GTYRAC 2 cut(s) 227, 249
HindII GTYRAC 2 cut(s) 227, 249
HinfI GANTC 1 cut(s) 522
Hpy166II GTNNAC 7 cut(s) 181, 220, 227, 249, 273, 403, 550
Hpy188I TCNGA 1 cut(s) 447
Hpy188III TCNNGA 4 cut(s) 334, 413, 519, 577
Hpy8I GTNNAC 7 cut(s) 181, 220, 227, 249, 273, 403, 550
Hpy99I CGWCG 1 cut(s) 253
HpyAV CCTTC 2 cut(s) 124, 483
HpyCH4III ACNGT 6 cut(s) 106, 209, 224, 346, 365, 547
HpyCH4IV ACGT 1 cut(s) 339
HpyCH4V TGCA 3 cut(s) 173, 296, 314
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpyF3I CTNAG 2 cut(s) 266, 318
HpySE526I ACGT 1 cut(s) 339
Hsp92II CATG 7 cut(s) 127, 337, 361, 416, 434, 467, 595
HspAI GCGC 3 cut(s) 132, 134, 636
Ksp22I TGATCA 2 cut(s) 466, 670
Kzo9I GATC 3 cut(s) 418, 466, 670
LpnPI CCDG 3 cut(s) 15, 265, 567
Lsp1109I GCAGC 4 cut(s) 29, 249, 326, 393
LweI GCATC 2 cut(s) 194, 610
MaeI CTAG 2 cut(s) 378, 688
MaeII ACGT 1 cut(s) 339
MaeIII GTNAC 4 cut(s) 106, 340, 452, 500
MalI GATC 3 cut(s) 420, 468, 672
MboI GATC 3 cut(s) 418, 466, 670
MboII GAAGA 3 cut(s) 265, 460, 652
MhlI GDGCHC 1 cut(s) 357
MluCI AATT 4 cut(s) 62, 506, 567, 630
MnlI CCTC 5 cut(s) 60, 110, 209, 261, 526
MseI TTAA 2 cut(s) 96, 570
MslI CAYNNNNRTG 4 cut(s) 122, 207, 338, 596
MspA1I CMGCKG 1 cut(s) 317
Mva1269I GAATGC 1 cut(s) 173
MvnI CGCG 2 cut(s) 132, 134
MwoI GCNNNNNNNGC 1 cut(s) 170
NdeII GATC 3 cut(s) 418, 466, 670
NheI GCTAGC 1 cut(s) 377
NlaIII CATG 7 cut(s) 127, 337, 361, 416, 434, 467, 595
NmuCI GTSAC 1 cut(s) 340
NspI RCATGY 1 cut(s) 434
PagI TCATGA 2 cut(s) 333, 412
PauI GCGCGC 1 cut(s) 132
PctI GAATGC 1 cut(s) 173
PfeI GAWTC 1 cut(s) 522
PkrI GCNGC 4 cut(s) 19, 264, 316, 383
PspEI GGTNACC 1 cut(s) 500
PstI CTGCAG 1 cut(s) 298
PteI GCGCGC 1 cut(s) 132
PvuII CAGCTG 1 cut(s) 317
RsaI GTAC 3 cut(s) 128, 362, 656
RsaNI GTAC 3 cut(s) 127, 361, 655
RseI CAYNNNNRTG 4 cut(s) 122, 207, 338, 596
SalI GTCGAC 2 cut(s) 225, 247
SaqAI TTAA 2 cut(s) 96, 570
SatI GCNGC 4 cut(s) 18, 263, 315, 382
Sau3AI GATC 3 cut(s) 418, 466, 670
SduI GDGCHC 1 cut(s) 357
SfaNI GCATC 2 cut(s) 194, 610
SfcI CTRYAG 1 cut(s) 294
SmiMI CAYNNNNRTG 4 cut(s) 122, 207, 338, 596
Sse9I AATT 4 cut(s) 62, 506, 567, 630
SsiI CCGC 1 cut(s) 130
SspMI CTAG 2 cut(s) 378, 688
StyI CCWWGG 1 cut(s) 234
TaaI ACNGT 6 cut(s) 106, 209, 224, 346, 365, 547
TaiI ACGT 1 cut(s) 342
TaqI TCGA 5 cut(s) 226, 248, 518, 651, 663
TasI AATT 4 cut(s) 62, 506, 567, 630
TatI WGTACW 2 cut(s) 360, 654
TfiI GAWTC 1 cut(s) 522
Tru1I TTAA 2 cut(s) 96, 570
Tru9I TTAA 2 cut(s) 96, 570
TscAI CASTG 1 cut(s) 303
TseFI GTSAC 1 cut(s) 340
TseI GCWGC 4 cut(s) 17, 262, 314, 381
Tsp45I GTSAC 1 cut(s) 340
TspDTI ATGAA 6 cut(s) 82, 184, 322, 350, 401, 465
TspGWI ACGGA 1 cut(s) 73
TspRI CASTG 1 cut(s) 303
XceI RCATGY 1 cut(s) 434
XmiI GTMKAC 3 cut(s) 180, 226, 248
XspI CTAG 2 cut(s) 378, 688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.