Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0009145

Physical Location & Seq

Genomic Coordinates Reverse (-)

2819987 .. 2821165

Gene Structure 1179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGTTTGCTTGTTCAATGCGTGTGCTCGGCTGGGCAATGCTGAAATTGGGGAGCAAGGACATGGTTTCGCGGTGAAGGTGGGTTTGGATTCTGGTATCAAGGCCTGCAATGCGGCCATGGATATGTATGTCAAGTGTGGCCAATTGGGTATGGCAAGACGGGTGTTCGAAGTGATGGAGGAGCGGATGTGTAGTAGAAATGAGAGTGCTTGGACGATCATGATTGTTGGATATCTAAGTATTGGGCTTATCTGCGAAAGCTTTTCCCTTCTTGAAGAAATGGTTTTTGGGTTTTCGGGCTTATCTGCGATAGGTGGTTTGGCAATGCATGGAAGGGGAAAACTAGTTCTGAATATGTTTCCTCAAATGCTCGAGGAAGCCAAGCCAGACGAATTAACCTTCATTGCTTTGTTGAGTGCTTGCAGCCACTCGAGCCTTTTTGATCAGTGCCGGCAATACTTTTATAATCTCCAGCAGGCTGAAGTCTTGATCAAGCAAATGCCAATGCCTCCGAACGAGGTGGTTTTGGGTTCCCTTCTCGGTTCTTGCAGAGTCCATGGAAAGCTAGAGCTTGGTGAAAGCCTTCTGCAAGAGCTGGTTCGAATCGATCCCCACAACACAGATTATCACGATAAGGCCAACTTACTGAGGCAGGACTTTAAGTATGAGAGTTTAAGAAAGCTTCCCGGAATAAGTTCAGTTTATATTGGTGGCCAAGTTCATCAGCTCAGTGCAGGCGATACGTCGCACCCGAAAACAATGCAGAGCTACATGAAGTTGGATGAGATGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

265

Amino Acids

29.29

Weight (kDa)

5.76

Isoelectric Point (pI)

43.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	34 - 78	1.1e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15340
fragaria_vesca	FvH4_6g47920
malus_domestica	MD09G1055200.v1.1 MD09G1055600.v1.1 MD17G1053300.v1.1
prunus_persica	Prupe.3G263400_v2.0.a1
pyrus_communis	pycom111g04650 pycom17g05110
rosa_chinensis	RchiOBHm_Chr2g0167121 RchiOBHm_Chr2g0167141
rosa_laevigata	RLG00000021698
rosa_multiflora	Rmu_sc0016102.1_g000002 Rmu_sc0033453.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083680 Rroxscaffold_2G00083700
rosa_rugosa	Rorug02G0528600 Rorug02G0528700 Rorug02G0528900.1
rosa_samantha	Rh2BG606700 Rh2CG577700 Rh2DG618400
rosa_wichuraiana	Rw2G049590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	465
AccBSI	CCGCTC	1 cut(s)	184
AccII	CGCG	1 cut(s)	71
AciI	CCGC	3 cut(s)	71, 113, 184
AclWI	GGATC	1 cut(s)	602
AcoI	YGGCCR	3 cut(s)	114, 139, 712
AcuI	CTGAAG	1 cut(s)	501
AgsI	TTSAA	2 cut(s)	16, 275
AhlI	ACTAGT	1 cut(s)	343
AjuI	GAANNNNNNNTTGG	4 cut(s)	68, 100, 270, 302
AloI	GAACNNNNNNTCC	2 cut(s)	330, 362
AluBI	AGCT	7 cut(s)	261, 565, 571, 595, 682, 727, 768
AluI	AGCT	7 cut(s)	261, 565, 571, 595, 682, 727, 768
Alw21I	GWGCWC	1 cut(s)	28
AlwI	GGATC	1 cut(s)	602
Ama87I	CYCGRG	2 cut(s)	371, 430
AoxI	GGCC	5 cut(s)	102, 114, 139, 636, 712
ApeKI	GCWGC	1 cut(s)	423
Asp700I	GAANNNNTTC	2 cut(s)	582, 694
AsuC2I	CCSGG	1 cut(s)	687
AsuHPI	GGTGA	2 cut(s)	85, 587
AsuII	TTCGAA	2 cut(s)	168, 601
AvaI	CYCGRG	2 cut(s)	371, 430
BalI	TGGCCA	2 cut(s)	141, 714
Bbv12I	GWGCWC	1 cut(s)	28
BbvI	GCAGC	1 cut(s)	435
BccI	CCATC	1 cut(s)	169
BcgI	CGANNNNNNTGC	2 cut(s)	742, 776
BclI	TGATCA	2 cut(s)	442, 489
BcnI	CCSGG	1 cut(s)	687
BcuI	ACTAGT	1 cut(s)	343
BfaI	CTAG	2 cut(s)	344, 566
BisI	GCNGC	2 cut(s)	114, 424
BlsI	GCNGC	2 cut(s)	115, 425
Bme1390I	CCNGG	1 cut(s)	687
BmeT110I	CYCGRG	2 cut(s)	371, 430
BmiI	GGNNCC	1 cut(s)	532
BmrFI	CCNGG	1 cut(s)	687
BpmI	CTGGAG	1 cut(s)	455
Bpu14I	TTCGAA	2 cut(s)	168, 601
BpuMI	CCSGG	1 cut(s)	687
Bsa29I	ATCGAT	1 cut(s)	606
BsaJI	CCNNGG	2 cut(s)	117, 556
BsaXI	ACNNNNNCTCC	2 cut(s)	173, 203
Bse118I	RCCGGY	1 cut(s)	450
Bse3DI	GCAATG	4 cut(s)	43, 115, 330, 402
BseCI	ATCGAT	1 cut(s)	606
BseDI	CCNNGG	2 cut(s)	117, 556
BseGI	GGATG	2 cut(s)	192, 787
BseMI	GCAATG	4 cut(s)	43, 115, 330, 402
BseMII	CTCAG	2 cut(s)	638, 742
BseRI	GAGGAG	1 cut(s)	194
BseXI	GCAGC	1 cut(s)	435
BseYI	CCCAGC	1 cut(s)	31
BsgI	GTGCAG	1 cut(s)	753
Bsh1236I	CGCG	1 cut(s)	71
BshFI	GGCC	5 cut(s)	104, 116, 141, 638, 714
BshVI	ATCGAT	1 cut(s)	606
BsiHKAI	GWGCWC	1 cut(s)	28
BsiHKCI	CYCGRG	2 cut(s)	371, 430
BsiSI	CCGG	2 cut(s)	451, 687
BsnI	GGCC	5 cut(s)	104, 116, 141, 638, 714
BsoBI	CYCGRG	2 cut(s)	371, 430
Bsp119I	TTCGAA	2 cut(s)	168, 601
Bsp1286I	GDGCHC	1 cut(s)	28
Bsp143I	GATC	4 cut(s)	216, 442, 489, 607
Bsp19I	CCATGG	2 cut(s)	117, 556
BspACI	CCGC	3 cut(s)	71, 113, 184
BspANI	GGCC	5 cut(s)	104, 116, 141, 638, 714
BspCNI	CTCAG	2 cut(s)	639, 741
BspDI	ATCGAT	1 cut(s)	606
BspFNI	CGCG	1 cut(s)	71
BspHI	TCATGA	1 cut(s)	219
BspLI	GGNNCC	1 cut(s)	532
BspPI	GGATC	1 cut(s)	602
BspT104I	TTCGAA	2 cut(s)	168, 601
BsrBI	CCGCTC	1 cut(s)	184
BsrDI	GCAATG	4 cut(s)	43, 115, 330, 402
BsrFI	RCCGGY	1 cut(s)	450
BssAI	RCCGGY	1 cut(s)	450
BssECI	CCNNGG	2 cut(s)	117, 556
BssMI	GATC	4 cut(s)	216, 442, 489, 607
BssT1I	CCWWGG	2 cut(s)	117, 556
BstBI	TTCGAA	2 cut(s)	168, 601
BstC8I	GCNNGC	5 cut(s)	106, 421, 452, 477, 736
BstDEI	CTNAG	3 cut(s)	236, 647, 728
BstDSI	CCRYGG	2 cut(s)	117, 556
BstF5I	GGATG	2 cut(s)	192, 787
BstFNI	CGCG	1 cut(s)	71
BstKTI	GATC	4 cut(s)	219, 445, 492, 610
BstMBI	GATC	4 cut(s)	216, 442, 489, 607
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 432
BstSCI	CCNGG	1 cut(s)	685
BstUI	CGCG	1 cut(s)	71
BstV1I	GCAGC	1 cut(s)	435
Bsu15I	ATCGAT	1 cut(s)	606
BsuRI	GGCC	5 cut(s)	104, 116, 141, 638, 714
BsuTUI	ATCGAT	1 cut(s)	606
BtgI	CCRYGG	2 cut(s)	117, 556
BtsCI	GGATG	2 cut(s)	192, 787
BtsIMutI	CAGTG	2 cut(s)	452, 736
Cac8I	GCNNGC	5 cut(s)	106, 421, 452, 477, 736
CciI	TCATGA	1 cut(s)	219
Cfr10I	RCCGGY	1 cut(s)	450
ClaI	ATCGAT	1 cut(s)	606
CviAII	CATG	6 cut(s)	62, 118, 220, 329, 557, 772
DdeI	CTNAG	3 cut(s)	236, 647, 728
DpnI	GATC	4 cut(s)	218, 444, 491, 609
DpnII	GATC	4 cut(s)	216, 442, 489, 607
EaeI	YGGCCR	3 cut(s)	114, 139, 712
Eco130I	CCWWGG	2 cut(s)	117, 556
Eco147I	AGGCCT	1 cut(s)	104
Eco32I	GATATC	1 cut(s)	233
Eco57I	CTGAAG	1 cut(s)	501
Eco88I	CYCGRG	2 cut(s)	371, 430
EcoRV	GATATC	1 cut(s)	233
EcoT14I	CCWWGG	2 cut(s)	117, 556
EcoT22I	ATGCAT	1 cut(s)	330
ErhI	CCWWGG	2 cut(s)	117, 556
FaeI	CATG	6 cut(s)	65, 121, 223, 332, 560, 775
FalI	AAGNNNNNCTT	2 cut(s)	626, 658
FatI	CATG	6 cut(s)	61, 117, 219, 328, 556, 771
FbaI	TGATCA	2 cut(s)	442, 489
Fnu4HI	GCNGC	2 cut(s)	114, 424
FokI	GGATG	1 cut(s)	199
Fsp4HI	GCNGC	2 cut(s)	114, 424
FspBI	CTAG	2 cut(s)	344, 566
GluI	GCNGC	2 cut(s)	114, 424
GsaI	CCCAGC	1 cut(s)	35
GsuI	CTGGAG	1 cut(s)	455
HaeIII	GGCC	5 cut(s)	104, 116, 141, 638, 714
HapII	CCGG	2 cut(s)	451, 687
Hin1II	CATG	6 cut(s)	65, 121, 223, 332, 560, 775
HindIII	AAGCTT	2 cut(s)	259, 680
HinfI	GANTC	3 cut(s)	89, 552, 603
HpaII	CCGG	2 cut(s)	451, 687
HphI	GGTGA	2 cut(s)	85, 587
Hpy188I	TCNGA	2 cut(s)	351, 513
Hpy188III	TCNNGA	4 cut(s)	220, 272, 487, 629
Hpy99I	CGWCG	1 cut(s)	748
HpyAV	CCTTC	6 cut(s)	70, 278, 327, 409, 545, 593
HpyCH4IV	ACGT	1 cut(s)	743
HpyCH4V	TGCA	7 cut(s)	108, 328, 423, 549, 589, 734, 763
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 432
HpyF3I	CTNAG	3 cut(s)	236, 647, 728
HpySE526I	ACGT	1 cut(s)	743
Hsp92II	CATG	6 cut(s)	65, 121, 223, 332, 560, 775
KroI	GCCGGC	1 cut(s)	450
KroNI	GCCGGC	1 cut(s)	452
Ksp22I	TGATCA	2 cut(s)	442, 489
Kzo9I	GATC	4 cut(s)	216, 442, 489, 607
LmnI	GCTCC	2 cut(s)	52, 181
Lsp1109I	GCAGC	1 cut(s)	435
MaeI	CTAG	2 cut(s)	344, 566
MaeII	ACGT	1 cut(s)	743
MalI	GATC	4 cut(s)	218, 444, 491, 609
MbiI	CCGCTC	1 cut(s)	184
MboI	GATC	4 cut(s)	216, 442, 489, 607
MboII	GAAGA	1 cut(s)	287
MfeI	CAATTG	1 cut(s)	143
MhlI	GDGCHC	1 cut(s)	28
MlsI	TGGCCA	2 cut(s)	141, 714
MluCI	AATT	3 cut(s)	45, 143, 392
MluNI	TGGCCA	2 cut(s)	141, 714
MlyI	GAGTC	1 cut(s)	561
MmeI	TCCRAC	2 cut(s)	208, 759
MnlI	CCTC	6 cut(s)	172, 367, 372, 511, 519, 642
Mox20I	TGGCCA	2 cut(s)	141, 714
Mph1103I	ATGCAT	1 cut(s)	330
MroNI	GCCGGC	1 cut(s)	450
MroXI	GAANNNNTTC	2 cut(s)	582, 694
MscI	TGGCCA	2 cut(s)	141, 714
MseI	TTAA	3 cut(s)	395, 660, 674
MslI	CAYNNNNRTG	1 cut(s)	122
Msp20I	TGGCCA	2 cut(s)	141, 714
MspI	CCGG	2 cut(s)	451, 687
MspR9I	CCNGG	1 cut(s)	687
MunI	CAATTG	1 cut(s)	143
MvnI	CGCG	1 cut(s)	71
MwoI	GCNNNNNNNGC	2 cut(s)	110, 432
NaeI	GCCGGC	1 cut(s)	452
NciI	CCSGG	1 cut(s)	687
NcoI	CCATGG	2 cut(s)	117, 556
NdeII	GATC	4 cut(s)	216, 442, 489, 607
NgoMIV	GCCGGC	1 cut(s)	450
NlaIII	CATG	6 cut(s)	65, 121, 223, 332, 560, 775
NlaIV	GGNNCC	1 cut(s)	532
NmeAIII	GCCGAG	1 cut(s)	7
NsiI	ATGCAT	1 cut(s)	330
NspV	TTCGAA	2 cut(s)	168, 601
PaeR7I	CTCGAG	2 cut(s)	371, 430
PagI	TCATGA	1 cut(s)	219
PceI	AGGCCT	1 cut(s)	104
PcsI	WCGNNNNNNNCGW	1 cut(s)	749
PdiI	GCCGGC	1 cut(s)	452
PdmI	GAANNNNTTC	2 cut(s)	582, 694
PfeI	GAWTC	2 cut(s)	89, 603
PfoI	TCCNGGA	1 cut(s)	685
PkrI	GCNGC	2 cut(s)	115, 425
PleI	GAGTC	1 cut(s)	560
PpsI	GAGTC	1 cut(s)	560
PsiI	TTATAA	1 cut(s)	465
PspFI	CCCAGC	1 cut(s)	31
PspN4I	GGNNCC	1 cut(s)	532
PspXI	VCTCGAGB	2 cut(s)	371, 430
RseI	CAYNNNNRTG	1 cut(s)	122
SaqAI	TTAA	3 cut(s)	395, 660, 674
SatI	GCNGC	2 cut(s)	114, 424
Sau3AI	GATC	4 cut(s)	216, 442, 489, 607
SchI	GAGTC	1 cut(s)	561
ScrFI	CCNGG	1 cut(s)	687
SduI	GDGCHC	1 cut(s)	28
Sfr274I	CTCGAG	2 cut(s)	371, 430
SfuI	TTCGAA	2 cut(s)	168, 601
SlaI	CTCGAG	2 cut(s)	371, 430
SmiMI	CAYNNNNRTG	1 cut(s)	122
SmlI	CTYRAG	2 cut(s)	371, 430
SmoI	CTYRAG	2 cut(s)	371, 430
SpeI	ACTAGT	1 cut(s)	343
Sse9I	AATT	3 cut(s)	45, 143, 392
SseBI	AGGCCT	1 cut(s)	104
SsiI	CCGC	3 cut(s)	71, 113, 184
SspMI	CTAG	2 cut(s)	344, 566
StuI	AGGCCT	1 cut(s)	104
StyD4I	CCNGG	1 cut(s)	685
StyI	CCWWGG	2 cut(s)	117, 556
TaiI	ACGT	1 cut(s)	746
TaqI	TCGA	5 cut(s)	168, 372, 431, 601, 606
TasI	AATT	3 cut(s)	45, 143, 392
TauI	GCSGC	1 cut(s)	116
TfiI	GAWTC	2 cut(s)	89, 603
Tru1I	TTAA	3 cut(s)	395, 660, 674
Tru9I	TTAA	3 cut(s)	395, 660, 674
TscAI	CASTG	2 cut(s)	452, 736
TseI	GCWGC	1 cut(s)	423
TspDTI	ATGAA	3 cut(s)	391, 710, 788
TspRI	CASTG	2 cut(s)	452, 736
XhoI	CTCGAG	2 cut(s)	371, 430
XmnI	GAANNNNTTC	2 cut(s)	582, 694
XspI	CTAG	2 cut(s)	344, 566
Zsp2I	ATGCAT	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.