pycom11g00960

Protein kinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0011667
Physical Location & Seq
Forward (+)
772494 .. 774800
2307 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g00960.3

Sequence Viewer

Length: 789 bp
ATGCCGGAGCTTCGCAGAGGAGTCCGCCGAGGCCGTGCTAGGGTAGCGAGCAAGCCCTCCGACCCACCGCCGCGGTCGCGGAGGACGCGTGCCACCGTCGCCCGAGAAGCCGCCGCCGAGGCCGTGGTGAGGCCCAGGACGAGGTTGGCTGTGAGGAAATTGAAAGAAGAGGAGAAGCAGGAGCCGGTGCCGGTGCCGGTGCCGGAGGAAGACCCTGTGATTGTGATATCGGTGAAAGACTCTGATTCGGAAGGCAGTAAGGGAGAAGAAGAAGTCGAGGAAGATAAGAAAGCTGTGATGGCTGACGATAGTGGTGGCCTGAGTGCTAATAAGGCTGCTGGGCAAGAAGAAGAGGGCAGTACTGCGCCTTTCCCTGAAAAGGTTCAAGTAGGAGGGTCACCACTCTATAAGGTAGAAAGGAAGCTGGGAAAAGGTGGGTTTGGTCAAGTGTTTGTTGGCCGTCGTGTTACGGGTGGAGTTGATCGTTTAAGTGGTGCTGGTGCTATTGAGGTAGCACTTAAATTTGAGCACAGAAACAGCAAAGGCTGTACTTATGGTCCTCCATATGAGTGGCAAGTTTACAACACGCTTGGTGGTAGTCATGGTGTGCCGAAAGTACATTATAAAGGAAAGCAAGGAGACTATTATGTTATGGTTATGGACATGCTAGGGCCTAGTTTATGGGATGTATGGAATTCTTCAGGGCAAATAATGTCTGCAGAAATGGTGGCTTGTATAGCTGTTGAGTCCTTATCAATTCTAGAGAAGATGCACTCACGAGGGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 ko04392 map04011 map04392
Pfam Domains
Protein Families
Pkinase

Protein Analysis

263

Amino Acids

28.52

Weight (kDa)

8.72

Isoelectric Point (pI)

64.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011667)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13670
fragaria_vesca FvH4_3g44690
malus_domestica MD03G1011500.v1.1 MD11G1014200.v1.1
prunus_persica Prupe.6G011900_v2.0.a1 Prupe.6G011900_v2.0.a1 Prupe.6G011900_v2.0.a1
pyrus_communis pycom03g01040 pycom11g00960
rosa_chinensis RchiOBHm_Chr5g0081361
rosa_laevigata RLG00000036927
rosa_multiflora Rmu_sc0007768.1_g000010 Rmu_sc0009187.1_g000017
rosa_roxburghii Rroxscaffold_1G00002180
rosa_rugosa Rorug05G0476000
rosa_samantha Rh5AG527400 Rh5BG551600 Rh5CG574400
rosa_wichuraiana Rw5G049050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 624
AccB1I GGYRCC 3 cut(s) 187, 193, 199
AccII CGCG 3 cut(s) 73, 79, 88
AciI CCGC 7 cut(s) 25, 68, 71, 73, 79, 111, 114
AcoI YGGCCR 1 cut(s) 457
AcsI RAATTY 2 cut(s) 521, 694
AcuI CTGAAG 1 cut(s) 684
AfaI GTAC 3 cut(s) 361, 550, 618
AfiI CCNNNNNNNGG 4 cut(s) 40, 129, 141, 379
AflIII ACRYGT 1 cut(s) 86
AgsI TTSAA 2 cut(s) 163, 386
AjnI CCWGG 1 cut(s) 134
AluBI AGCT 4 cut(s) 10, 293, 424, 740
AluI AGCT 4 cut(s) 10, 293, 424, 740
Alw21I GWGCWC 1 cut(s) 531
Alw26I GTCTC 1 cut(s) 633
Ama87I CYCGRG 1 cut(s) 102
AoxI GGCC 6 cut(s) 31, 120, 131, 316, 457, 671
ApeKI GCWGC 1 cut(s) 335
ApoI RAATTY 2 cut(s) 521, 694
Asp700I GAANNNNTTC 1 cut(s) 381
AspLEI GCGC 1 cut(s) 367
AspS9I GGNCC 3 cut(s) 132, 557, 671
AsuHPI GGTGA 3 cut(s) 139, 244, 390
AvaI CYCGRG 1 cut(s) 102
AvaII GGWCC 1 cut(s) 557
BanI GGYRCC 3 cut(s) 187, 193, 199
BauI CACGAG 1 cut(s) 777
BbsI GAAGAC 1 cut(s) 216
Bbv12I GWGCWC 1 cut(s) 531
BbvI GCAGC 1 cut(s) 322
BccI CCATC 1 cut(s) 292
BceAI ACGGC 3 cut(s) 18, 107, 444
BciT130I CCWGG 1 cut(s) 136
BcoDI GTCTC 1 cut(s) 633
BfaI CTAG 4 cut(s) 39, 668, 675, 761
BfmI CTRYAG 1 cut(s) 717
BglI GCCNNNNNGGC 1 cut(s) 119
BisI GCNGC 4 cut(s) 71, 111, 114, 336
BlsI GCNGC 4 cut(s) 72, 112, 115, 337
BmcAI AGTACT 1 cut(s) 361
Bme1390I CCNGG 1 cut(s) 136
Bme18I GGWCC 1 cut(s) 557
BmeT110I CYCGRG 1 cut(s) 102
BmgT120I GGNCC 3 cut(s) 132, 557, 671
BmiI GGNNCC 4 cut(s) 183, 189, 195, 201
BmrFI CCNGG 1 cut(s) 136
BmsI GCATC 1 cut(s) 759
BpiI GAAGAC 1 cut(s) 216
BsaJI CCNNGG 5 cut(s) 28, 71, 117, 123, 134
BsaXI ACNNNNNCTCC 2 cut(s) 73, 103
Bsc4I CCNNNNNNNGG 4 cut(s) 40, 129, 141, 379
Bse118I RCCGGY 3 cut(s) 184, 190, 196
BseBI CCWGG 1 cut(s) 136
BseDI CCNNGG 5 cut(s) 28, 71, 117, 123, 134
BseGI GGATG 1 cut(s) 691
BseLI CCNNNNNNNGG 4 cut(s) 40, 129, 141, 379
BseMII CTCAG 1 cut(s) 311
BseRI GAGGAG 2 cut(s) 33, 185
BseXI GCAGC 1 cut(s) 322
BseYI CCCAGC 2 cut(s) 338, 424
Bsh1236I CGCG 3 cut(s) 73, 79, 88
Bsh1285I CGRYCG 1 cut(s) 77
BshFI GGCC 6 cut(s) 33, 122, 133, 318, 459, 673
BshNI GGYRCC 3 cut(s) 187, 193, 199
BsiEI CGRYCG 1 cut(s) 77
BsiHKAI GWGCWC 1 cut(s) 531
BsiHKCI CYCGRG 1 cut(s) 102
BsiSI CCGG 5 cut(s) 5, 185, 191, 197, 203
BslI CCNNNNNNNGG 4 cut(s) 40, 129, 141, 379
BsmAI GTCTC 1 cut(s) 633
BsnI GGCC 6 cut(s) 33, 122, 133, 318, 459, 673
BsoBI CYCGRG 1 cut(s) 102
Bsp1286I GDGCHC 1 cut(s) 531
Bsp143I GATC 1 cut(s) 481
BspACI CCGC 7 cut(s) 25, 68, 71, 73, 79, 111, 114
BspANI GGCC 6 cut(s) 33, 122, 133, 318, 459, 673
BspCNI CTCAG 1 cut(s) 312
BspFNI CGCG 3 cut(s) 73, 79, 88
BspLI GGNNCC 4 cut(s) 183, 189, 195, 201
BspMAI CTGCAG 1 cut(s) 721
BspT107I GGYRCC 3 cut(s) 187, 193, 199
BsrFI RCCGGY 3 cut(s) 184, 190, 196
BssAI RCCGGY 3 cut(s) 184, 190, 196
BssECI CCNNGG 5 cut(s) 28, 71, 117, 123, 134
BssMI GATC 1 cut(s) 481
BssSI CACGAG 1 cut(s) 777
Bst2BI CACGAG 1 cut(s) 777
Bst2UI CCWGG 1 cut(s) 136
Bst4CI ACNGT 1 cut(s) 97
Bst6I CTCTTC 2 cut(s) 162, 345
BstC8I GCNNGC 3 cut(s) 49, 53, 90
BstDEI CTNAG 1 cut(s) 320
BstDSI CCRYGG 2 cut(s) 71, 123
BstEII GGTNACC 1 cut(s) 396
BstF5I GGATG 1 cut(s) 691
BstFNI CGCG 3 cut(s) 73, 79, 88
BstHHI GCGC 1 cut(s) 367
BstKTI GATC 1 cut(s) 484
BstMAI GTCTC 1 cut(s) 633
BstMBI GATC 1 cut(s) 481
BstMCI CGRYCG 1 cut(s) 77
BstMWI GCNNNNNNNGC 9 cut(s) 44, 76, 85, 98, 107, 119, 299, 332, 737
BstNI CCWGG 1 cut(s) 136
BstNSI RCATGY 1 cut(s) 667
BstPI GGTNACC 1 cut(s) 396
BstSCI CCNGG 1 cut(s) 134
BstSFI CTRYAG 1 cut(s) 717
BstUI CGCG 3 cut(s) 73, 79, 88
BstV1I GCAGC 1 cut(s) 322
BstV2I GAAGAC 1 cut(s) 216
BstXI CCANNNNNNTGG 1 cut(s) 570
BsuRI GGCC 6 cut(s) 33, 122, 133, 318, 459, 673
BtgI CCRYGG 2 cut(s) 71, 123
BtsCI GGATG 1 cut(s) 691
Cac8I GCNNGC 3 cut(s) 49, 53, 90
CfoI GCGC 1 cut(s) 367
Cfr10I RCCGGY 3 cut(s) 184, 190, 196
Cfr13I GGNCC 3 cut(s) 132, 557, 671
Cfr42I CCGCGG 1 cut(s) 74
CseI GACGC 1 cut(s) 94
Csp6I GTAC 3 cut(s) 360, 549, 617
CviAII CATG 2 cut(s) 602, 664
CviQI GTAC 3 cut(s) 360, 549, 617
DdeI CTNAG 1 cut(s) 320
DpnI GATC 1 cut(s) 483
DpnII GATC 1 cut(s) 481
EaeI YGGCCR 1 cut(s) 457
Eam1104I CTCTTC 2 cut(s) 162, 345
EarI CTCTTC 2 cut(s) 162, 345
EciI GGCGGA 1 cut(s) 14
Eco32I GATATC 1 cut(s) 228
Eco47I GGWCC 1 cut(s) 557
Eco57I CTGAAG 1 cut(s) 684
Eco88I CYCGRG 1 cut(s) 102
Eco91I GGTNACC 1 cut(s) 396
EcoO109I RGGNCCY 1 cut(s) 671
EcoO65I GGTNACC 1 cut(s) 396
EcoRI GAATTC 1 cut(s) 694
EcoRII CCWGG 1 cut(s) 134
EcoRV GATATC 1 cut(s) 228
FaeI CATG 2 cut(s) 605, 667
FatI CATG 2 cut(s) 601, 663
FauNDI CATATG 1 cut(s) 565
Fnu4HI GCNGC 4 cut(s) 71, 111, 114, 336
FokI GGATG 1 cut(s) 698
Fsp4HI GCNGC 4 cut(s) 71, 111, 114, 336
FspBI CTAG 4 cut(s) 39, 668, 675, 761
GlaI GCGC 1 cut(s) 366
GluI GCNGC 4 cut(s) 71, 111, 114, 336
GsaI CCCAGC 2 cut(s) 342, 428
HaeIII GGCC 6 cut(s) 33, 122, 133, 318, 459, 673
HapII CCGG 5 cut(s) 5, 185, 191, 197, 203
HgaI GACGC 1 cut(s) 94
HhaI GCGC 1 cut(s) 367
Hin1II CATG 2 cut(s) 605, 667
Hin6I GCGC 1 cut(s) 365
HinP1I GCGC 1 cut(s) 365
HinfI GANTC 4 cut(s) 21, 239, 245, 746
HpaII CCGG 5 cut(s) 5, 185, 191, 197, 203
HphI GGTGA 3 cut(s) 139, 244, 390
Hpy166II GTNNAC 1 cut(s) 580
Hpy188I TCNGA 3 cut(s) 61, 244, 250
Hpy188III TCNNGA 2 cut(s) 761, 777
Hpy8I GTNNAC 1 cut(s) 580
Hpy99I CGWCG 2 cut(s) 101, 465
HpyAV CCTTC 1 cut(s) 245
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4V TGCA 2 cut(s) 719, 772
HpyF10VI GCNNNNNNNGC 9 cut(s) 44, 76, 85, 98, 107, 119, 299, 332, 737
HpyF3I CTNAG 1 cut(s) 320
Hsp92II CATG 2 cut(s) 605, 667
HspAI GCGC 1 cut(s) 365
KspI CCGCGG 1 cut(s) 74
Kzo9I GATC 1 cut(s) 481
LmnI GCTCC 2 cut(s) 7, 181
Lsp1109I GCAGC 1 cut(s) 322
LweI GCATC 1 cut(s) 759
MaeI CTAG 4 cut(s) 39, 668, 675, 761
MaeIII GTNAC 2 cut(s) 396, 466
MalI GATC 1 cut(s) 483
MboI GATC 1 cut(s) 481
MboII GAAGA 9 cut(s) 179, 221, 278, 281, 293, 359, 362, 690, 778
MhlI GDGCHC 1 cut(s) 531
MluCI AATT 4 cut(s) 158, 521, 694, 756
MluI ACGCGT 1 cut(s) 86
MlyI GAGTC 3 cut(s) 30, 233, 755
MmeI TCCRAC 1 cut(s) 84
MroXI GAANNNNTTC 1 cut(s) 381
MseI TTAA 2 cut(s) 488, 519
MslI CAYNNNNRTG 1 cut(s) 568
MspA1I CMGCKG 1 cut(s) 73
MspI CCGG 5 cut(s) 5, 185, 191, 197, 203
MspR9I CCNGG 1 cut(s) 136
MvaI CCWGG 1 cut(s) 136
MvnI CGCG 3 cut(s) 73, 79, 88
MwoI GCNNNNNNNGC 9 cut(s) 44, 76, 85, 98, 107, 119, 299, 332, 737
NdeI CATATG 1 cut(s) 565
NdeII GATC 1 cut(s) 481
NlaIII CATG 2 cut(s) 605, 667
NlaIV GGNNCC 4 cut(s) 183, 189, 195, 201
NmeAIII GCCGAG 2 cut(s) 53, 142
NmuCI GTSAC 1 cut(s) 396
NspI RCATGY 1 cut(s) 667
PdmI GAANNNNTTC 1 cut(s) 381
PfeI GAWTC 1 cut(s) 245
PkrI GCNGC 4 cut(s) 72, 112, 115, 337
PleI GAGTC 3 cut(s) 29, 233, 754
PpsI GAGTC 3 cut(s) 29, 233, 754
PsiI TTATAA 1 cut(s) 624
Psp6I CCWGG 1 cut(s) 134
PspEI GGTNACC 1 cut(s) 396
PspFI CCCAGC 2 cut(s) 338, 424
PspGI CCWGG 1 cut(s) 134
PspN4I GGNNCC 4 cut(s) 183, 189, 195, 201
PspPI GGNCC 3 cut(s) 132, 557, 671
PstI CTGCAG 1 cut(s) 721
RsaI GTAC 3 cut(s) 361, 550, 618
RsaNI GTAC 3 cut(s) 360, 549, 617
RseI CAYNNNNRTG 1 cut(s) 568
SacII CCGCGG 1 cut(s) 74
SaqAI TTAA 2 cut(s) 488, 519
SatI GCNGC 4 cut(s) 71, 111, 114, 336
Sau3AI GATC 1 cut(s) 481
Sau96I GGNCC 3 cut(s) 132, 557, 671
ScaI AGTACT 1 cut(s) 361
SchI GAGTC 3 cut(s) 30, 233, 755
ScrFI CCNGG 1 cut(s) 136
SduI GDGCHC 1 cut(s) 531
SetI ASST 9 cut(s) 12, 146, 295, 384, 414, 426, 436, 513, 742
SfaNI GCATC 1 cut(s) 759
SfcI CTRYAG 1 cut(s) 717
Sfr303I CCGCGG 1 cut(s) 74
SgrBI CCGCGG 1 cut(s) 74
SinI GGWCC 1 cut(s) 557
SmiMI CAYNNNNRTG 1 cut(s) 568
Sse9I AATT 4 cut(s) 158, 521, 694, 756
SsiI CCGC 7 cut(s) 25, 68, 71, 73, 79, 111, 114
SspMI CTAG 4 cut(s) 39, 668, 675, 761
StyD4I CCNGG 1 cut(s) 134
TaaI ACNGT 1 cut(s) 97
TaqI TCGA 1 cut(s) 276
TasI AATT 4 cut(s) 158, 521, 694, 756
TatI WGTACW 3 cut(s) 359, 548, 616
TauI GCSGC 3 cut(s) 73, 113, 116
TfiI GAWTC 1 cut(s) 245
Tru1I TTAA 2 cut(s) 488, 519
Tru9I TTAA 2 cut(s) 488, 519
TseFI GTSAC 1 cut(s) 396
TseI GCWGC 1 cut(s) 335
Tsp45I GTSAC 1 cut(s) 396
VpaK11BI GGWCC 1 cut(s) 557
XapI RAATTY 2 cut(s) 521, 694
XbaI TCTAGA 1 cut(s) 760
XceI RCATGY 1 cut(s) 667
XcmI CCANNNNNNNNNTGG 1 cut(s) 142
XmnI GAANNNNTTC 1 cut(s) 381
XspI CTAG 4 cut(s) 39, 668, 675, 761
ZrmI AGTACT 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.