Rh5BG551600

Protein kinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0011667
Physical Location & Seq
Reverse (-)
87701084 .. 87706678
5595 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG551600.1

Sequence Viewer

Length: 1176 bp
ATGCCGGAGCTTCGAAAAGGTGTCCGCCGAGGTCGTGCTAGGGTAGCTCACAAGCCGTCGGACCCCCCGCCGCCGCCGCCTCCGTCTCGAAGGACGCGTGCCACGGTCGCGAGGCAGGTAGCTGAGGCTGTGGTCAGGCCGAGGACGAGGTTGGCCGTGAAAAAGCTGAAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGAGAACAAAGCTGTGATGGCTGACGATAGTGGTGGCTTGAGTGCTAATAAGGCTGCTGGGCAAGAAGAAGAGGGCAGTACGGCGCCGTTTCCTGAAAAGGTTCAAGTAGGAGGATCGCCGCAATATAAGGTGGAAAGGAAGCTTGGCAAAGGTGGCTTTGGTCAGGTGTTCGTTGGTCGTCGTGTTACAGGTGGAGTTGACCGAACAAGTGGTCCTGGTGCTATCGAGGTAGCACTGAAATTCGAGCACAGAAATAGTAAAGGCTGCAGCTATGGTCCTCCATATGAGTGGCAAGTTTACAACACTCTTGGTGGTAGTCATGGAGTTCCTAGAGTACATTATAAAGGAAAGCAAGGGGACTATTATGTAATGGTTATGGACATGCTAGGACCTAGTTTATGGGATGTATGGAATACTTCAGGGCAAGCGATGTCTGCAGAAATGGTAGCTTGTATAGCTGTTGAGTCTTTATCGATTCTGGAGAAGATGCACTCTAGAGGGTATGTGCATGGAGATGTAAAGCCAGAGAACTTTTTGCTTGGTCAGCCATCTACCGCTCAAGAGAAGAAATTGTATCTTGTTGACCTCGGATTAGCAACAAAGTGGAAAGACAGCTCAAGTGGGCTTCATGTTGAATATGATCAACGTCCTGATATGTTTAGAGGAACTGTTCGATATGCTAGTGTACATGCTCACTTGGGAAGAACTGCTAGTAGACGAGATGACCTCGAATCACTTGCTTATACACTTATTTTTCTCCATCGAGGAAGGTTGCCATGGCAGGGGTATCAGATTATTAGCCAGGTTGGCCAGAAACGGGGTAGATTGAATATTGAGGAAGATGATGACGGGCAGCCAAGGAAGAAGGTTCGGCTAGGAGTACCTGCTACACAATGGATTTCAATTTACAATGCTCGGATGCCAATGAAACAAAGGAGAGGAGTTAGCTGCAGGAGCAGTGACTCTGTTGTACCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 ko04392 map04011 map04392
Pfam Domains
Protein Families
Pkinase

Protein Analysis

391

Amino Acids

43.48

Weight (kDa)

9.51

Isoelectric Point (pI)

58.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 108 - 332 8e-17 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 109 - 272 1e-06 Protein tyrosine and serine/threonine kinase
Pkinase_fungal PF17667 222 - 318 2e-07 Fungal protein kinase
DUF7477 PF24289 334 - 379 1.2e-15 Domain of unknown function (DUF7477)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011667)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13670
fragaria_vesca FvH4_3g44690
malus_domestica MD03G1011500.v1.1 MD11G1014200.v1.1
prunus_persica Prupe.6G011900_v2.0.a1 Prupe.6G011900_v2.0.a1 Prupe.6G011900_v2.0.a1
pyrus_communis pycom03g01040 pycom11g00960
rosa_chinensis RchiOBHm_Chr5g0081361
rosa_laevigata RLG00000036927
rosa_multiflora Rmu_sc0007768.1_g000010 Rmu_sc0009187.1_g000017
rosa_roxburghii Rroxscaffold_1G00002180
rosa_rugosa Rorug05G0476000
rosa_samantha Rh5AG527400 Rh5BG551600 Rh5CG574400
rosa_wichuraiana Rw5G049050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 540
Acc36I ACCTGC 2 cut(s) 106, 1090
AccB1I GGYRCC 1 cut(s) 280
AccBSI CCGCTC 1 cut(s) 755
AccI GTMKAC 1 cut(s) 913
AccII CGCG 2 cut(s) 97, 110
AciI CCGC 7 cut(s) 25, 68, 71, 74, 77, 317, 753
AclWI GGATC 1 cut(s) 319
AcoI YGGCCR 2 cut(s) 153, 1006
AcsI RAATTY 1 cut(s) 437
AcuI CTGAAG 2 cut(s) 188, 600
AcyI GRCGYC 1 cut(s) 281
AfaI GTAC 5 cut(s) 277, 534, 885, 1080, 1170
AfiI CCNNNNNNNGG 2 cut(s) 980, 1015
AflIII ACRYGT 1 cut(s) 95
AgsI TTSAA 4 cut(s) 302, 833, 1027, 1101
AjnI CCWGG 2 cut(s) 412, 999
AjuI GAANNNNNNNTTGG 2 cut(s) 324, 356
AloI GAACNNNNNNTCC 2 cut(s) 394, 426
Alw21I GWGCWC 1 cut(s) 447
Alw26I GTCTC 1 cut(s) 90
AlwI GGATC 1 cut(s) 319
AoxI GGCC 3 cut(s) 137, 153, 1006
ApeKI GCWGC 5 cut(s) 251, 462, 465, 1051, 1146
ApoI RAATTY 1 cut(s) 437
ArsI GACNNNNNNTTYG 2 cut(s) 394, 426
Asp700I GAANNNNTTC 1 cut(s) 297
AspLEI GCGC 1 cut(s) 283
AspS9I GGNCC 4 cut(s) 61, 410, 473, 587
AsuII TTCGAA 1 cut(s) 13
AvaII GGWCC 4 cut(s) 61, 410, 473, 587
BalI TGGCCA 1 cut(s) 1008
BanI GGYRCC 1 cut(s) 280
Bbv12I GWGCWC 1 cut(s) 447
BbvCI CCTCAGC 1 cut(s) 123
BbvI GCAGC 5 cut(s) 238, 449, 477, 1063, 1133
BccI CCATC 3 cut(s) 208, 754, 966
BceAI ACGGC 4 cut(s) 40, 140, 268, 294
BcgI CGANNNNNNTGC 2 cut(s) 917, 951
BciT130I CCWGG 2 cut(s) 414, 1001
BclI TGATCA 1 cut(s) 838
BcoDI GTCTC 1 cut(s) 90
BfaI CTAG 8 cut(s) 39, 528, 584, 591, 693, 879, 909, 1073
BfmI CTRYAG 3 cut(s) 463, 633, 1147
BfoI RGCGCY 1 cut(s) 284
BfuAI ACCTGC 2 cut(s) 106, 1090
BglI GCCNNNNNGGC 1 cut(s) 1005
BisI GCNGC 9 cut(s) 71, 74, 77, 252, 317, 463, 466, 1052, 1147
BlsI GCNGC 9 cut(s) 72, 75, 78, 253, 318, 464, 467, 1053, 1148
Bme1390I CCNGG 2 cut(s) 414, 1001
Bme18I GGWCC 4 cut(s) 61, 410, 473, 587
BmgT120I GGNCC 4 cut(s) 61, 410, 473, 587
BmiI GGNNCC 2 cut(s) 63, 282
BmrFI CCNGG 2 cut(s) 414, 1001
BmsI GCATC 2 cut(s) 675, 1107
BplI GAGNNNNNCTC 2 cut(s) 909, 941
BpmI CTGGAG 1 cut(s) 698
Bpu10I CCTNAGC 1 cut(s) 123
Bpu14I TTCGAA 1 cut(s) 13
BpuEI CTTGAG 3 cut(s) 256, 741, 799
Bsa29I ATCGAT 1 cut(s) 671
BsaHI GRCGYC 1 cut(s) 281
BsaJI CCNNGG 6 cut(s) 28, 102, 140, 784, 974, 1055
Bsc4I CCNNNNNNNGG 2 cut(s) 980, 1015
BseBI CCWGG 2 cut(s) 414, 1001
BseCI ATCGAT 1 cut(s) 671
BseDI CCNNGG 6 cut(s) 28, 102, 140, 784, 974, 1055
BseGI GGATG 2 cut(s) 607, 1122
BseLI CCNNNNNNNGG 2 cut(s) 980, 1015
BseMII CTCAG 1 cut(s) 114
BseRI GAGGAG 3 cut(s) 188, 191, 1152
BseXI GCAGC 5 cut(s) 238, 449, 477, 1063, 1133
BseYI CCCAGC 1 cut(s) 254
Bsh1236I CGCG 2 cut(s) 97, 110
Bsh1285I CGRYCG 1 cut(s) 108
BshFI GGCC 3 cut(s) 139, 155, 1008
BshNI GGYRCC 1 cut(s) 280
BshVI ATCGAT 1 cut(s) 671
BsiEI CGRYCG 1 cut(s) 108
BsiHKAI GWGCWC 1 cut(s) 447
BsiSI CCGG 1 cut(s) 5
BslFI GGGAC 1 cut(s) 569
BslI CCNNNNNNNGG 2 cut(s) 980, 1015
BsmAI GTCTC 1 cut(s) 90
BsmBI CGTCTC 1 cut(s) 90
BsmFI GGGAC 1 cut(s) 569
BsnI GGCC 3 cut(s) 139, 155, 1008
Bsp119I TTCGAA 1 cut(s) 13
Bsp1286I GDGCHC 1 cut(s) 447
Bsp1407I TGTACA 1 cut(s) 883
Bsp143I GATC 2 cut(s) 311, 838
Bsp19I CCATGG 1 cut(s) 974
Bsp68I TCGCGA 1 cut(s) 110
BspACI CCGC 7 cut(s) 25, 68, 71, 74, 77, 317, 753
BspANI GGCC 3 cut(s) 139, 155, 1008
BspCNI CTCAG 1 cut(s) 115
BspDI ATCGAT 1 cut(s) 671
BspFNI CGCG 2 cut(s) 97, 110
BspLI GGNNCC 2 cut(s) 63, 282
BspMAI CTGCAG 3 cut(s) 467, 637, 1151
BspMI ACCTGC 2 cut(s) 106, 1090
BspPI GGATC 1 cut(s) 319
BspT104I TTCGAA 1 cut(s) 13
BspT107I GGYRCC 1 cut(s) 280
BsrBI CCGCTC 1 cut(s) 755
BsrGI TGTACA 1 cut(s) 883
BssECI CCNNGG 6 cut(s) 28, 102, 140, 784, 974, 1055
BssMI GATC 2 cut(s) 311, 838
BssNI GRCGYC 1 cut(s) 281
BssT1I CCWWGG 2 cut(s) 974, 1055
Bst2UI CCWGG 2 cut(s) 414, 1001
Bst4CI ACNGT 3 cut(s) 106, 868, 1173
Bst6I CTCTTC 2 cut(s) 192, 261
BstACI GRCGYC 1 cut(s) 281
BstAUI TGTACA 1 cut(s) 883
BstBI TTCGAA 1 cut(s) 13
BstC8I GCNNGC 2 cut(s) 99, 624
BstDEI CTNAG 1 cut(s) 123
BstDSI CCRYGG 2 cut(s) 102, 974
BstF5I GGATG 2 cut(s) 607, 1122
BstFNI CGCG 2 cut(s) 97, 110
BstH2I RGCGCY 1 cut(s) 284
BstHHI GCGC 1 cut(s) 283
BstKTI GATC 2 cut(s) 314, 841
BstMAI GTCTC 1 cut(s) 90
BstMBI GATC 2 cut(s) 311, 838
BstMCI CGRYCG 1 cut(s) 108
BstNI CCWGG 2 cut(s) 414, 1001
BstNSI RCATGY 2 cut(s) 583, 890
BstSCI CCNGG 2 cut(s) 412, 999
BstSFI CTRYAG 3 cut(s) 463, 633, 1147
BstUI CGCG 2 cut(s) 97, 110
BstV1I GCAGC 5 cut(s) 238, 449, 477, 1063, 1133
BstXI CCANNNNNNTGG 1 cut(s) 486
Bsu15I ATCGAT 1 cut(s) 671
BsuRI GGCC 3 cut(s) 139, 155, 1008
BsuTUI ATCGAT 1 cut(s) 671
BtgI CCRYGG 2 cut(s) 102, 974
BtgZI GCGATG 1 cut(s) 641
BtsCI GGATG 2 cut(s) 607, 1122
BtsI GCAGTG 1 cut(s) 1162
BtsIMutI CAGTG 2 cut(s) 431, 1162
BtuMI TCGCGA 1 cut(s) 110
BveI ACCTGC 2 cut(s) 106, 1090
Cac8I GCNNGC 2 cut(s) 99, 624
CfoI GCGC 1 cut(s) 283
Cfr13I GGNCC 4 cut(s) 61, 410, 473, 587
ClaI ATCGAT 1 cut(s) 671
CseI GACGC 1 cut(s) 103
Csp6I GTAC 5 cut(s) 276, 533, 884, 1079, 1169
CviAII CATG 6 cut(s) 518, 580, 707, 827, 887, 975
CviQI GTAC 5 cut(s) 276, 533, 884, 1079, 1169
DdeI CTNAG 1 cut(s) 123
DinI GGCGCC 1 cut(s) 282
DpnI GATC 2 cut(s) 313, 840
DpnII GATC 2 cut(s) 311, 838
EaeI YGGCCR 2 cut(s) 153, 1006
Eam1104I CTCTTC 2 cut(s) 192, 261
EarI CTCTTC 2 cut(s) 192, 261
EciI GGCGGA 1 cut(s) 14
Eco130I CCWWGG 2 cut(s) 974, 1055
Eco47I GGWCC 4 cut(s) 61, 410, 473, 587
Eco57I CTGAAG 2 cut(s) 188, 600
EcoO109I RGGNCCY 1 cut(s) 587
EcoRII CCWGG 2 cut(s) 412, 999
EcoT14I CCWWGG 2 cut(s) 974, 1055
EgeI GGCGCC 1 cut(s) 282
EheI GGCGCC 1 cut(s) 282
ErhI CCWWGG 2 cut(s) 974, 1055
Esp3I CGTCTC 1 cut(s) 90
FaeI CATG 6 cut(s) 521, 583, 710, 830, 890, 978
FaqI GGGAC 1 cut(s) 569
FatI CATG 6 cut(s) 517, 579, 706, 826, 886, 974
FauI CCCGC 1 cut(s) 75
FauNDI CATATG 1 cut(s) 481
FbaI TGATCA 1 cut(s) 838
FblI GTMKAC 1 cut(s) 913
Fnu4HI GCNGC 9 cut(s) 71, 74, 77, 252, 317, 463, 466, 1052, 1147
FokI GGATG 2 cut(s) 614, 1129
Fsp4HI GCNGC 9 cut(s) 71, 74, 77, 252, 317, 463, 466, 1052, 1147
FspBI CTAG 8 cut(s) 39, 528, 584, 591, 693, 879, 909, 1073
GlaI GCGC 1 cut(s) 282
GluI GCNGC 9 cut(s) 71, 74, 77, 252, 317, 463, 466, 1052, 1147
GsaI CCCAGC 1 cut(s) 258
GsuI CTGGAG 1 cut(s) 698
HaeII RGCGCY 1 cut(s) 284
HaeIII GGCC 3 cut(s) 139, 155, 1008
HapII CCGG 1 cut(s) 5
HgaI GACGC 1 cut(s) 103
HhaI GCGC 1 cut(s) 283
Hin1I GRCGYC 1 cut(s) 281
Hin1II CATG 6 cut(s) 521, 583, 710, 830, 890, 978
Hin6I GCGC 1 cut(s) 281
HinP1I GCGC 1 cut(s) 281
HincII GTYRAC 2 cut(s) 397, 781
HindII GTYRAC 2 cut(s) 397, 781
HindIII AAGCTT 1 cut(s) 338
HinfI GANTC 4 cut(s) 662, 673, 929, 1160
HpaII CCGG 1 cut(s) 5
Hpy166II GTNNAC 5 cut(s) 397, 496, 781, 884, 914
Hpy188I TCNGA 4 cut(s) 61, 788, 990, 1116
Hpy188III TCNNGA 7 cut(s) 87, 109, 290, 677, 693, 758, 848
Hpy8I GTNNAC 5 cut(s) 397, 496, 781, 884, 914
Hpy99I CGWCG 2 cut(s) 61, 381
HpyAV CCTTC 4 cut(s) 84, 163, 960, 1057
HpyCH4III ACNGT 3 cut(s) 106, 868, 1173
HpyCH4IV ACGT 1 cut(s) 844
HpyCH4V TGCA 5 cut(s) 465, 635, 688, 706, 1149
HpyF3I CTNAG 1 cut(s) 123
HpySE526I ACGT 1 cut(s) 844
Hsp92I GRCGYC 1 cut(s) 281
Hsp92II CATG 6 cut(s) 521, 583, 710, 830, 890, 978
HspAI GCGC 1 cut(s) 281
KasI GGCGCC 1 cut(s) 280
Ksp22I TGATCA 1 cut(s) 838
Kzo9I GATC 2 cut(s) 311, 838
LmnI GCTCC 2 cut(s) 7, 1152
Lsp1109I GCAGC 5 cut(s) 238, 449, 477, 1063, 1133
LweI GCATC 2 cut(s) 675, 1107
MaeI CTAG 8 cut(s) 39, 528, 584, 591, 693, 879, 909, 1073
MaeII ACGT 1 cut(s) 844
MaeIII GTNAC 2 cut(s) 382, 1157
MalI GATC 2 cut(s) 313, 840
MbiI CCGCTC 1 cut(s) 755
MboI GATC 2 cut(s) 311, 838
MhlI GDGCHC 1 cut(s) 447
MlsI TGGCCA 1 cut(s) 1008
MluCI AATT 3 cut(s) 437, 767, 1101
MluI ACGCGT 1 cut(s) 95
MluNI TGGCCA 1 cut(s) 1008
Mly113I GGCGCC 1 cut(s) 281
MlyI GAGTC 2 cut(s) 671, 1154
MmeI TCCRAC 1 cut(s) 39
Mox20I TGGCCA 1 cut(s) 1008
MroXI GAANNNNTTC 1 cut(s) 297
MscI TGGCCA 1 cut(s) 1008
MslI CAYNNNNRTG 2 cut(s) 484, 711
Msp20I TGGCCA 1 cut(s) 1008
MspI CCGG 1 cut(s) 5
MspR9I CCNGG 2 cut(s) 414, 1001
MvaI CCWGG 2 cut(s) 414, 1001
MvnI CGCG 2 cut(s) 97, 110
NarI GGCGCC 1 cut(s) 281
NcoI CCATGG 1 cut(s) 974
NdeI CATATG 1 cut(s) 481
NdeII GATC 2 cut(s) 311, 838
NlaIII CATG 6 cut(s) 521, 583, 710, 830, 890, 978
NlaIV GGNNCC 2 cut(s) 63, 282
NmeAIII GCCGAG 2 cut(s) 53, 165
NmuCI GTSAC 1 cut(s) 1157
NruI TCGCGA 1 cut(s) 110
NspI RCATGY 2 cut(s) 583, 890
NspV TTCGAA 1 cut(s) 13
PcsI WCGNNNNNNNCGW 1 cut(s) 94
PdmI GAANNNNTTC 1 cut(s) 297
PfeI GAWTC 2 cut(s) 673, 929
PkrI GCNGC 9 cut(s) 72, 75, 78, 253, 318, 464, 467, 1053, 1148
PleI GAGTC 2 cut(s) 670, 1154
PluTI GGCGCC 1 cut(s) 284
PpsI GAGTC 2 cut(s) 670, 1154
PpuMI RGGWCCY 1 cut(s) 587
PsiI TTATAA 1 cut(s) 540
Psp5II RGGWCCY 1 cut(s) 587
Psp6I CCWGG 2 cut(s) 412, 999
PspFI CCCAGC 1 cut(s) 254
PspGI CCWGG 2 cut(s) 412, 999
PspN4I GGNNCC 2 cut(s) 63, 282
PspPI GGNCC 4 cut(s) 61, 410, 473, 587
PspPPI RGGWCCY 1 cut(s) 587
PstI CTGCAG 3 cut(s) 467, 637, 1151
RruI TCGCGA 1 cut(s) 110
RsaI GTAC 5 cut(s) 277, 534, 885, 1080, 1170
RsaNI GTAC 5 cut(s) 276, 533, 884, 1079, 1169
RseI CAYNNNNRTG 2 cut(s) 484, 711
SatI GCNGC 9 cut(s) 71, 74, 77, 252, 317, 463, 466, 1052, 1147
Sau3AI GATC 2 cut(s) 311, 838
Sau96I GGNCC 4 cut(s) 61, 410, 473, 587
SchI GAGTC 2 cut(s) 671, 1154
ScrFI CCNGG 2 cut(s) 414, 1001
SduI GDGCHC 1 cut(s) 447
SfaNI GCATC 2 cut(s) 675, 1107
SfcI CTRYAG 3 cut(s) 463, 633, 1147
SfoI GGCGCC 1 cut(s) 282
SfuI TTCGAA 1 cut(s) 13
SinI GGWCC 4 cut(s) 61, 410, 473, 587
SmiMI CAYNNNNRTG 2 cut(s) 484, 711
SmlI CTYRAG 3 cut(s) 235, 756, 814
SmoI CTYRAG 3 cut(s) 235, 756, 814
Sse9I AATT 3 cut(s) 437, 767, 1101
SsiI CCGC 7 cut(s) 25, 68, 71, 74, 77, 317, 753
SspDI GGCGCC 1 cut(s) 280
SspI AATATT 1 cut(s) 1030
SspMI CTAG 8 cut(s) 39, 528, 584, 591, 693, 879, 909, 1073
StyD4I CCNGG 2 cut(s) 412, 999
StyI CCWWGG 2 cut(s) 974, 1055
TaaI ACNGT 3 cut(s) 106, 868, 1173
TaiI ACGT 1 cut(s) 847
TaqI TCGA 8 cut(s) 13, 88, 423, 441, 671, 871, 927, 961
TaqII GACCGA 1 cut(s) 414
TasI AATT 3 cut(s) 437, 767, 1101
TatI WGTACW 2 cut(s) 532, 883
TauI GCSGC 4 cut(s) 73, 76, 79, 319
TfiI GAWTC 2 cut(s) 673, 929
TscAI CASTG 2 cut(s) 438, 1162
TseFI GTSAC 1 cut(s) 1157
TseI GCWGC 5 cut(s) 251, 462, 465, 1051, 1146
Tsp45I GTSAC 1 cut(s) 1157
TspDTI ATGAA 2 cut(s) 815, 1139
TspGWI ACGGA 1 cut(s) 72
TspRI CASTG 2 cut(s) 438, 1162
VpaK11BI GGWCC 4 cut(s) 61, 410, 473, 587
XapI RAATTY 1 cut(s) 437
XbaI TCTAGA 1 cut(s) 692
XceI RCATGY 2 cut(s) 583, 890
XmiI GTMKAC 1 cut(s) 913
XmnI GAANNNNTTC 1 cut(s) 297
XspI CTAG 8 cut(s) 39, 528, 584, 591, 693, 879, 909, 1073
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.