Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0005423

Physical Location & Seq

Genomic Coordinates Forward (+)

2812813 .. 2816505

Gene Structure 3693 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGTCAAATTCTTCGCCGGTTGGATCCCAATCTCAACAATTCAGTGACAGCAGCTTCTCTCGCACCTTCAAGTACTTACTCGCTACCCAATTCTTGTCGAGGGGAATCCCATTCATATTCAATGCGTGGATCGTCAGACACCTCTCAGTCGAGGACTTTGCGCTTTATGGAGTACAATTTCCTCTTTTTGTCACCTGTGTATTGTTTCTGAGTCGGGAGGGAGTTCGGCGAGCATGCCTGCGCGCAGACATGAAATGTGATGGTGTGTCGACAGAAGAAAATATAGCAAAGATAATGAAATTTGCATGGTTGATTCCCCCATGTGGAATTCTTCTTACTGTTGCAGCGTGCACTGTTGTCTTCTGGAATAAAGACTTGAGCTTTTCTAATCCATATGGACAAGCGATCTTAATTAATGGCCTTGCATGTATTTTTGAACTTTTGGCAGAGCCCTTGTATATTCTTTCCCAGAACTTGCTTCTGCTTAAATTAAGGCTAGTAGTTGAAACAGTTGCCACTCTTTTCCGGTGCATAACGGTGTTCATTCTCATTGTCAAGCAAACTGGCATGGAGAAAGCAATTGTATTTACATTGTCACAAACTGCCTATGGAGTGTGCTTGTTCCTTGGTTATTGGGTCTACTTCCTTTTTTTTGCTGCATGTAGAAGTACTGCTCTTTTCCCCTTCAGTGTAAAGAATAAGAAGGATTATGATAGGGAGCTGTCAGACATGTGTAAGTTGTTTACACTTCAATCCTTTGTGAAGTTGATCCTTCAAGAAGGACAAAGTCTTATCCTTTTATGGTGGGCGACATATTATAACCAAGCTGTGTATGGGCTTGTGGATAAATTAGGGAGCCTGGTGGTCAGGATGGTGTTTCTTCCTTTTGAAGAAAGTTCCTACGCTACATTTGCAAGGAAAAGACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0006869 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0016020 GO:0016043 GO:0031984 GO:0033036 GO:0034203 GO:0034204 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046836 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0097035 GO:0098827 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rft-1

Protein Analysis

310

Amino Acids

35.17

Weight (kDa)

8.96

Isoelectric Point (pI)

52.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rft-1	PF04506	22 - 306	7.4e-77	Rft protein
Polysacc_synt	PF01943	25 - 304	4.5e-08	Polysaccharide biosynthesis protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07630 AT5G07630
fragaria_vesca	FvH4_3g41750 FvH4_3g41750 FvH4_3g41750 FvH4_3g41750 FvH4_3g41750 FvH4_3g41750 FvH4_3g41750
malus_domestica	MD11G1042200.v1.1
prunus_persica	Prupe.6G033300_v2.0.a1 Prupe.6G033300_v2.0.a1 Prupe.6G033300_v2.0.a1 Prupe.6G033300_v2.0.a1 Prupe.6G033300_v2.0.a1
pyrus_communis	pycom11g03630
rosa_chinensis	RchiOBHm_Chr5g0074831
rosa_laevigata	RLG00000036509
rosa_multiflora	Rmu_sc0000909.1_g000001 Rmu_sc0003945.1_g000001 Rmu_sc0005365.1_g000010
rosa_roxburghii	Rroxscaffold_1G00006740
rosa_rugosa	Rorug05G0434700 Rorug05G0434800
rosa_samantha	Rh5AG492100 Rh5BG513500 Rh5CG537200 Rh5DG525600
rosa_wichuraiana	Rw5G045590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	819
AccI	GTMKAC	2 cut(s)	269, 639
AccII	CGCG	1 cut(s)	243
AclWI	GGATC	4 cut(s)	18, 31, 137, 763
AcsI	RAATTY	3 cut(s)	7, 299, 327
AcuI	CTGAAG	1 cut(s)	670
AfaI	GTAC	3 cut(s)	74, 174, 670
AfiI	CCNNNNNNNGG	1 cut(s)	323
AflIII	ACRYGT	1 cut(s)	729
AgsI	TTSAA	7 cut(s)	70, 121, 437, 506, 752, 776, 890
AjnI	CCWGG	1 cut(s)	858
AluBI	AGCT	4 cut(s)	54, 381, 721, 827
AluI	AGCT	4 cut(s)	54, 381, 721, 827
Alw21I	GWGCWC	1 cut(s)	353
Alw44I	GTGCAC	1 cut(s)	349
AlwI	GGATC	4 cut(s)	18, 31, 137, 763
AoxI	GGCC	1 cut(s)	418
ApaLI	GTGCAC	1 cut(s)	349
ApeKI	GCWGC	3 cut(s)	51, 344, 656
ApoI	RAATTY	3 cut(s)	7, 299, 327
AseI	ATTAAT	1 cut(s)	414
AspLEI	GCGC	3 cut(s)	163, 243, 245
AsuHPI	GGTGA	1 cut(s)	184
BaeGI	GKGCMC	1 cut(s)	353
BamHI	GGATCC	1 cut(s)	23
BanII	GRGCYC	1 cut(s)	453
BbsI	GAAGAC	1 cut(s)	352
Bbv12I	GWGCWC	1 cut(s)	353
BbvI	GCAGC	3 cut(s)	63, 356, 643
BccI	CCATC	2 cut(s)	254, 865
BcgI	CGANNNNNNTGC	2 cut(s)	140, 174
BciT130I	CCWGG	1 cut(s)	860
BfaI	CTAG	1 cut(s)	497
BisI	GCNGC	3 cut(s)	52, 345, 657
BlsI	GCNGC	3 cut(s)	53, 346, 658
BmcAI	AGTACT	2 cut(s)	74, 670
Bme1390I	CCNGG	1 cut(s)	860
BmiI	GGNNCC	2 cut(s)	25, 857
BmrFI	CCNGG	1 cut(s)	860
BpiI	GAAGAC	1 cut(s)	352
BpuEI	CTTGAG	1 cut(s)	397
BsaBI	GATNNNNATC	1 cut(s)	28
BsaJI	CCNNGG	1 cut(s)	625
BsaWI	WCCGGW	1 cut(s)	525
Bsc4I	CCNNNNNNNGG	1 cut(s)	323
Bse118I	RCCGGY	1 cut(s)	16
Bse1I	ACTGG	1 cut(s)	568
Bse8I	GATNNNNATC	1 cut(s)	28
BseBI	CCWGG	1 cut(s)	860
BseDI	CCNNGG	1 cut(s)	625
BseGI	GGATG	1 cut(s)	876
BseJI	GATNNNNATC	1 cut(s)	28
BseLI	CCNNNNNNNGG	1 cut(s)	323
BseMII	CTCAG	2 cut(s)	159, 200
BseNI	ACTGG	1 cut(s)	568
BsePI	GCGCGC	1 cut(s)	241
BseSI	GKGCMC	1 cut(s)	353
BseXI	GCAGC	3 cut(s)	63, 356, 643
Bsh1236I	CGCG	1 cut(s)	243
BshFI	GGCC	1 cut(s)	420
BsiHKAI	GWGCWC	1 cut(s)	353
BsiSI	CCGG	2 cut(s)	17, 526
BslI	CCNNNNNNNGG	1 cut(s)	323
BsnI	GGCC	1 cut(s)	420
Bsp1286I	GDGCHC	2 cut(s)	353, 453
Bsp143I	GATC	4 cut(s)	23, 129, 405, 768
BspANI	GGCC	1 cut(s)	420
BspCNI	CTCAG	2 cut(s)	158, 201
BspFNI	CGCG	1 cut(s)	243
BspLI	GGNNCC	2 cut(s)	25, 857
BspPI	GGATC	4 cut(s)	18, 31, 137, 763
BsrFI	RCCGGY	1 cut(s)	16
BsrI	ACTGG	1 cut(s)	568
BssAI	RCCGGY	1 cut(s)	16
BssECI	CCNNGG	1 cut(s)	625
BssHII	GCGCGC	1 cut(s)	241
BssMI	GATC	4 cut(s)	23, 129, 405, 768
BssT1I	CCWWGG	1 cut(s)	625
Bst2UI	CCWGG	1 cut(s)	860
Bst4CI	ACNGT	4 cut(s)	340, 355, 511, 538
BstC8I	GCNNGC	5 cut(s)	231, 235, 239, 243, 349
BstDEI	CTNAG	2 cut(s)	145, 209
BstF5I	GGATG	1 cut(s)	876
BstFNI	CGCG	1 cut(s)	243
BstHHI	GCGC	3 cut(s)	163, 243, 245
BstKTI	GATC	4 cut(s)	26, 132, 408, 771
BstMBI	GATC	4 cut(s)	23, 129, 405, 768
BstMWI	GCNNNNNNNGC	2 cut(s)	60, 911
BstNI	CCWGG	1 cut(s)	860
BstNSI	RCATGY	4 cut(s)	237, 429, 663, 733
BstSCI	CCNGG	1 cut(s)	858
BstSLI	GKGCMC	1 cut(s)	353
BstUI	CGCG	1 cut(s)	243
BstV1I	GCAGC	3 cut(s)	63, 356, 643
BstV2I	GAAGAC	1 cut(s)	352
BstX2I	RGATCY	1 cut(s)	23
BstYI	RGATCY	1 cut(s)	23
BsuRI	GGCC	1 cut(s)	420
BtsCI	GGATG	1 cut(s)	876
BtsIMutI	CAGTG	3 cut(s)	49, 351, 694
Cac8I	GCNNGC	5 cut(s)	231, 235, 239, 243, 349
CfoI	GCGC	3 cut(s)	163, 243, 245
Cfr10I	RCCGGY	1 cut(s)	16
Csp6I	GTAC	3 cut(s)	73, 173, 669
CviAII	CATG	8 cut(s)	234, 250, 306, 321, 426, 568, 660, 730
CviJI	RGCY	9 cut(s)	54, 381, 420, 451, 496, 721, 827, 838, 858
CviKI_1	RGCY	9 cut(s)	54, 381, 420, 451, 496, 721, 827, 838, 858
CviQI	GTAC	3 cut(s)	73, 173, 669
DdeI	CTNAG	2 cut(s)	145, 209
DpnI	GATC	4 cut(s)	25, 131, 407, 770
DpnII	GATC	4 cut(s)	23, 129, 405, 768
Eco130I	CCWWGG	1 cut(s)	625
Eco24I	GRGCYC	1 cut(s)	453
Eco57I	CTGAAG	1 cut(s)	670
EcoRI	GAATTC	1 cut(s)	327
EcoRII	CCWGG	1 cut(s)	858
EcoT14I	CCWWGG	1 cut(s)	625
EcoT38I	GRGCYC	1 cut(s)	453
ErhI	CCWWGG	1 cut(s)	625
FaeI	CATG	8 cut(s)	237, 253, 309, 324, 429, 571, 663, 733
FatI	CATG	8 cut(s)	233, 249, 305, 320, 425, 567, 659, 729
FauNDI	CATATG	1 cut(s)	394
FblI	GTMKAC	2 cut(s)	269, 639
Fnu4HI	GCNGC	3 cut(s)	52, 345, 657
FokI	GGATG	1 cut(s)	883
FriOI	GRGCYC	1 cut(s)	453
Fsp4HI	GCNGC	3 cut(s)	52, 345, 657
FspBI	CTAG	1 cut(s)	497
GlaI	GCGC	3 cut(s)	162, 242, 244
GluI	GCNGC	3 cut(s)	52, 345, 657
HaeIII	GGCC	1 cut(s)	420
HapII	CCGG	2 cut(s)	17, 526
HhaI	GCGC	3 cut(s)	163, 243, 245
Hin1II	CATG	8 cut(s)	237, 253, 309, 324, 429, 571, 663, 733
Hin6I	GCGC	3 cut(s)	161, 241, 243
HinP1I	GCGC	3 cut(s)	161, 241, 243
HincII	GTYRAC	1 cut(s)	270
HindII	GTYRAC	1 cut(s)	270
HinfI	GANTC	3 cut(s)	105, 211, 313
HpaII	CCGG	2 cut(s)	17, 526
HphI	GGTGA	1 cut(s)	184
Hpy166II	GTNNAC	4 cut(s)	270, 351, 640, 744
Hpy188I	TCNGA	3 cut(s)	137, 210, 727
Hpy188III	TCNNGA	4 cut(s)	215, 364, 776, 868
Hpy8I	GTNNAC	4 cut(s)	270, 351, 640, 744
HpyAV	CCTTC	5 cut(s)	76, 694, 697, 773, 782
HpyCH4III	ACNGT	4 cut(s)	340, 355, 511, 538
HpyCH4V	TGCA	7 cut(s)	305, 344, 351, 425, 531, 659, 914
HpyF10VI	GCNNNNNNNGC	2 cut(s)	60, 911
HpyF3I	CTNAG	2 cut(s)	145, 209
Hsp92II	CATG	8 cut(s)	237, 253, 309, 324, 429, 571, 663, 733
HspAI	GCGC	3 cut(s)	161, 241, 243
Kzo9I	GATC	4 cut(s)	23, 129, 405, 768
LmnI	GCTCC	2 cut(s)	718, 855
Lsp1109I	GCAGC	3 cut(s)	63, 356, 643
MaeI	CTAG	1 cut(s)	497
MaeIII	GTNAC	3 cut(s)	44, 190, 594
MalI	GATC	4 cut(s)	25, 131, 407, 770
MboI	GATC	4 cut(s)	23, 129, 405, 768
MboII	GAAGA	6 cut(s)	3, 287, 323, 352, 872, 902
MfeI	CAATTG	1 cut(s)	579
MflI	RGATCY	1 cut(s)	23
MhlI	GDGCHC	2 cut(s)	353, 453
MlyI	GAGTC	1 cut(s)	220
MnlI	CCTC	5 cut(s)	93, 145, 152, 192, 211
MseI	TTAA	4 cut(s)	410, 414, 486, 491
MslI	CAYNNNNRTG	1 cut(s)	536
MspI	CCGG	2 cut(s)	17, 526
MspR9I	CCNGG	1 cut(s)	860
MunI	CAATTG	1 cut(s)	579
MvaI	CCWGG	1 cut(s)	860
MvnI	CGCG	1 cut(s)	243
MwoI	GCNNNNNNNGC	2 cut(s)	60, 911
NdeI	CATATG	1 cut(s)	394
NdeII	GATC	4 cut(s)	23, 129, 405, 768
NlaIII	CATG	8 cut(s)	237, 253, 309, 324, 429, 571, 663, 733
NlaIV	GGNNCC	2 cut(s)	25, 857
NmuCI	GTSAC	3 cut(s)	44, 190, 594
NspI	RCATGY	4 cut(s)	237, 429, 663, 733
PacI	TTAATTAA	1 cut(s)	414
PaeI	GCATGC	1 cut(s)	237
PauI	GCGCGC	1 cut(s)	241
PciI	ACATGT	1 cut(s)	729
PfeI	GAWTC	2 cut(s)	105, 313
PflFI	GACNNNGTC	1 cut(s)	786
PkrI	GCNGC	3 cut(s)	53, 346, 658
PleI	GAGTC	1 cut(s)	219
PpsI	GAGTC	1 cut(s)	219
PscI	ACATGT	1 cut(s)	729
PshBI	ATTAAT	1 cut(s)	414
PsiI	TTATAA	1 cut(s)	819
Psp6I	CCWGG	1 cut(s)	858
PspGI	CCWGG	1 cut(s)	858
PspN4I	GGNNCC	2 cut(s)	25, 857
PsuI	RGATCY	1 cut(s)	23
PsyI	GACNNNGTC	1 cut(s)	786
PteI	GCGCGC	1 cut(s)	241
RsaI	GTAC	3 cut(s)	74, 174, 670
RsaNI	GTAC	3 cut(s)	73, 173, 669
RseI	CAYNNNNRTG	1 cut(s)	536
SalI	GTCGAC	1 cut(s)	268
SaqAI	TTAA	4 cut(s)	410, 414, 486, 491
SatI	GCNGC	3 cut(s)	52, 345, 657
Sau3AI	GATC	4 cut(s)	23, 129, 405, 768
ScaI	AGTACT	2 cut(s)	74, 670
SchI	GAGTC	1 cut(s)	220
ScrFI	CCNGG	1 cut(s)	860
SduI	GDGCHC	2 cut(s)	353, 453
SetI	ASST	7 cut(s)	56, 68, 144, 197, 383, 723, 829
SmiMI	CAYNNNNRTG	1 cut(s)	536
SmlI	CTYRAG	1 cut(s)	376
SmoI	CTYRAG	1 cut(s)	376
SphI	GCATGC	1 cut(s)	237
SspMI	CTAG	1 cut(s)	497
StyD4I	CCNGG	1 cut(s)	858
StyI	CCWWGG	1 cut(s)	625
TaaI	ACNGT	4 cut(s)	340, 355, 511, 538
TaqI	TCGA	3 cut(s)	98, 150, 269
TatI	WGTACW	3 cut(s)	72, 172, 668
TfiI	GAWTC	2 cut(s)	105, 313
Tru1I	TTAA	4 cut(s)	410, 414, 486, 491
Tru9I	TTAA	4 cut(s)	410, 414, 486, 491
TscAI	CASTG	3 cut(s)	49, 358, 694
TseFI	GTSAC	3 cut(s)	44, 190, 594
TseI	GCWGC	3 cut(s)	51, 344, 656
Tsp45I	GTSAC	3 cut(s)	44, 190, 594
TspDTI	ATGAA	4 cut(s)	103, 266, 311, 532
TspRI	CASTG	3 cut(s)	49, 358, 694
Tth111I	GACNNNGTC	1 cut(s)	786
VneI	GTGCAC	1 cut(s)	349
VspI	ATTAAT	1 cut(s)	414
XapI	RAATTY	3 cut(s)	7, 299, 327
XceI	RCATGY	4 cut(s)	237, 429, 663, 733
XcmI	CCANNNNNNNNNTGG	1 cut(s)	830
XmiI	GTMKAC	2 cut(s)	269, 639
XspI	CTAG	1 cut(s)	497
ZrmI	AGTACT	2 cut(s)	74, 670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.