Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0004995

Physical Location & Seq

Genomic Coordinates Reverse (-)

2826176 .. 2827413

Gene Structure 1238 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGGGGCCGTAGTGGGAAAGAGCGAAAATGCTAGAAGGTTTTCGATACATGAAACGAAGCTAGAGGCCAAAATGGTTGAAGCTATGCAGCGCAGAGCAGCTAAAGGAAGTATTATGAAATCATTTAACAGCCTCATCTTGAAGTTTCCGAAGATTGACGAGAGCTTAAGAAATTGCAAGGCTATTTTCGAGCAATTTGATGAGGATTCGAATGGCATGATCGATCAAGAAGAGATGAAAAAGTGTTTCTATAAACTGGAAGTCTCTTTTACAGATGAGGAGATCGATGATCTCTTTGAGGCATGCGATATTAACGAGGATTTGAGAATCAAGTTTAACGAGTTCATCGTTCTTATTTGCCTTGTTCATCTTCTCAAGGATGATAACAAAGCCGTTCACACTAAATTGCAATTGGGAATGCCGGAAATGGAGGCCACATTTGAAACATTGGTAGATGGATTTGTGTTCTTGGATAAGAACAAGGATGGTTATGTCAGCAAGAGCGAGATGGTCGAGGCCATTAACGAAACTACTACAGGGGAACGTTCCTCCGGGCGAATAGCCATGAAAAGATTTGAAGAAATGGACTGGGATAAAAACGGAATGGTGAACTTCAAGGAGTTTCTATTTGCGTTTACTCGATGGATCGGCATTGACGATCTTGAGGACGAGGATGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

228

Amino Acids

26.33

Weight (kDa)

4.66

Isoelectric Point (pI)

43.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	59 - 116	8.7e-11	EF-hand domain pair
EF-hand_7	PF13499	154 - 212	2.9e-07	EF-hand domain pair

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26470 AT4G26470 AT4G26470
fragaria_vesca	FvH4_3g41720 FvH4_3g41720 FvH4_3g41720 FvH4_3g41720
malus_domestica	MD03G1041500.v1.1 MD11G1042400.v1.1
prunus_persica	Prupe.6G033600_v2.0.a1 Prupe.6G033600_v2.0.a1
pyrus_communis	pycom03g03220 pycom11g03650
rosa_chinensis	RchiOBHm_Chr5g0074811
rosa_laevigata	RLG00000036507
rosa_multiflora	Rmu_co8378831.1_g000001 Rmu_sc0000909.1_g000003 Rmu_sc0005365.1_g000009
rosa_roxburghii	Rroxscaffold_1G00006760
rosa_rugosa	Rorug05G0434000 Rorug05G0434100 Rorug05G0434100 Rorug05G0434200 Rorug05G0434300 Rorug05G0434400
rosa_samantha	Rh5AG491900 Rh5BG513300 Rh5CG537000 Rh5DG525400
rosa_wichuraiana	Rw5G045570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	544
AclWI	GGATC	1 cut(s)	653
AflII	CTTAAG	1 cut(s)	166
AgsI	TTSAA	5 cut(s)	80, 142, 443, 578, 616
AluBI	AGCT	4 cut(s)	61, 83, 101, 165
AluI	AGCT	4 cut(s)	61, 83, 101, 165
Alw26I	GTCTC	1 cut(s)	268
AlwI	GGATC	1 cut(s)	653
AoxI	GGCC	4 cut(s)	6, 66, 432, 516
ApeKI	GCWGC	2 cut(s)	88, 98
Asp700I	GAANNNNTTC	1 cut(s)	40
AspLEI	GCGC	1 cut(s)	93
AspS9I	GGNCC	1 cut(s)	6
AsuC2I	CCSGG	1 cut(s)	553
AsuHPI	GGTGA	1 cut(s)	619
AsuII	TTCGAA	1 cut(s)	209
BbvI	GCAGC	2 cut(s)	100, 110
BccI	CCATC	4 cut(s)	449, 479, 502, 636
BceAI	ACGGC	1 cut(s)	377
BcnI	CCSGG	1 cut(s)	553
BcoDI	GTCTC	1 cut(s)	268
BfaI	CTAG	2 cut(s)	33, 62
BfmI	CTRYAG	1 cut(s)	534
BfrI	CTTAAG	1 cut(s)	166
BisI	GCNGC	2 cut(s)	89, 99
BlsI	GCNGC	2 cut(s)	90, 100
Bme1390I	CCNGG	1 cut(s)	553
BmgT120I	GGNCC	1 cut(s)	6
BmiI	GGNNCC	1 cut(s)	7
BmrFI	CCNGG	1 cut(s)	553
BmrI	ACTGGG	1 cut(s)	598
BmuI	ACTGGG	1 cut(s)	598
Bpu14I	TTCGAA	1 cut(s)	209
BpuEI	CTTGAG	2 cut(s)	359, 683
BpuMI	CCSGG	1 cut(s)	553
Bsa29I	ATCGAT	2 cut(s)	222, 285
Bse1I	ACTGG	2 cut(s)	261, 593
BseCI	ATCGAT	2 cut(s)	222, 285
BseGI	GGATG	3 cut(s)	385, 490, 679
BseNI	ACTGG	2 cut(s)	261, 593
BseRI	GAGGAG	1 cut(s)	293
BseXI	GCAGC	2 cut(s)	100, 110
BshFI	GGCC	4 cut(s)	8, 68, 434, 518
BshVI	ATCGAT	2 cut(s)	222, 285
BsiSI	CCGG	2 cut(s)	422, 552
BsmAI	GTCTC	1 cut(s)	268
BsmI	GAATGC	1 cut(s)	423
BsnI	GGCC	4 cut(s)	8, 68, 434, 518
Bsp119I	TTCGAA	1 cut(s)	209
Bsp143I	GATC	6 cut(s)	219, 223, 282, 289, 645, 658
BspANI	GGCC	4 cut(s)	8, 68, 434, 518
BspDI	ATCGAT	2 cut(s)	222, 285
BspLI	GGNNCC	1 cut(s)	7
BspPI	GGATC	1 cut(s)	653
BspT104I	TTCGAA	1 cut(s)	209
BspTI	CTTAAG	1 cut(s)	166
BsrI	ACTGG	2 cut(s)	261, 593
BssMI	GATC	6 cut(s)	219, 223, 282, 289, 645, 658
Bst6I	CTCTTC	1 cut(s)	225
BstAFI	CTTAAG	1 cut(s)	166
BstBI	TTCGAA	1 cut(s)	209
BstC8I	GCNNGC	1 cut(s)	304
BstF5I	GGATG	3 cut(s)	385, 490, 679
BstHHI	GCGC	1 cut(s)	93
BstKTI	GATC	6 cut(s)	222, 226, 285, 292, 648, 661
BstMAI	GTCTC	1 cut(s)	268
BstMBI	GATC	6 cut(s)	219, 223, 282, 289, 645, 658
BstNSI	RCATGY	1 cut(s)	306
BstSCI	CCNGG	1 cut(s)	551
BstSFI	CTRYAG	1 cut(s)	534
BstV1I	GCAGC	2 cut(s)	100, 110
Bsu15I	ATCGAT	2 cut(s)	222, 285
BsuRI	GGCC	4 cut(s)	8, 68, 434, 518
BsuTUI	ATCGAT	2 cut(s)	222, 285
BtsCI	GGATG	3 cut(s)	385, 490, 679
Cac8I	GCNNGC	1 cut(s)	304
CfoI	GCGC	1 cut(s)	93
Cfr13I	GGNCC	1 cut(s)	6
ClaI	ATCGAT	2 cut(s)	222, 285
CviAII	CATG	4 cut(s)	50, 217, 303, 565
DpnI	GATC	6 cut(s)	221, 225, 284, 291, 647, 660
DpnII	GATC	6 cut(s)	219, 223, 282, 289, 645, 658
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
FaeI	CATG	4 cut(s)	53, 220, 306, 568
FaiI	YATR	8 cut(s)	51, 86, 116, 218, 252, 304, 492, 566
FatI	CATG	4 cut(s)	49, 216, 302, 564
Fnu4HI	GCNGC	2 cut(s)	89, 99
FokI	GGATG	2 cut(s)	392, 497
Fsp4HI	GCNGC	2 cut(s)	89, 99
FspBI	CTAG	2 cut(s)	33, 62
GlaI	GCGC	1 cut(s)	92
GluI	GCNGC	2 cut(s)	89, 99
HaeIII	GGCC	4 cut(s)	8, 68, 434, 518
HapII	CCGG	2 cut(s)	422, 552
HhaI	GCGC	1 cut(s)	93
Hin1II	CATG	4 cut(s)	53, 220, 306, 568
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HinfI	GANTC	2 cut(s)	206, 327
HpaII	CCGG	2 cut(s)	422, 552
HphI	GGTGA	1 cut(s)	619
Hpy166II	GTNNAC	3 cut(s)	397, 610, 636
Hpy188I	TCNGA	1 cut(s)	150
Hpy188III	TCNNGA	3 cut(s)	139, 227, 662
Hpy8I	GTNNAC	3 cut(s)	397, 610, 636
HpyAV	CCTTC	1 cut(s)	30
HpyCH4IV	ACGT	1 cut(s)	544
HpyCH4V	TGCA	3 cut(s)	88, 177, 409
HpySE526I	ACGT	1 cut(s)	544
Hsp92II	CATG	4 cut(s)	53, 220, 306, 568
HspAI	GCGC	1 cut(s)	91
Kzo9I	GATC	6 cut(s)	219, 223, 282, 289, 645, 658
LpnPI	CCDG	5 cut(s)	242, 435, 522, 565, 574
Lsp1109I	GCAGC	2 cut(s)	100, 110
MaeI	CTAG	2 cut(s)	33, 62
MaeII	ACGT	1 cut(s)	544
MalI	GATC	6 cut(s)	221, 225, 284, 291, 647, 660
MboI	GATC	6 cut(s)	219, 223, 282, 289, 645, 658
MboII	GAAGA	4 cut(s)	163, 242, 362, 590
MfeI	CAATTG	1 cut(s)	410
MluCI	AATT	4 cut(s)	172, 194, 404, 410
MroXI	GAANNNNTTC	1 cut(s)	40
MseI	TTAA	5 cut(s)	126, 167, 312, 336, 522
MspCI	CTTAAG	1 cut(s)	166
MspI	CCGG	2 cut(s)	422, 552
MspR9I	CCNGG	1 cut(s)	553
MunI	CAATTG	1 cut(s)	410
Mva1269I	GAATGC	1 cut(s)	423
NciI	CCSGG	1 cut(s)	553
NdeII	GATC	6 cut(s)	219, 223, 282, 289, 645, 658
NlaIII	CATG	4 cut(s)	53, 220, 306, 568
NlaIV	GGNNCC	1 cut(s)	7
NspI	RCATGY	1 cut(s)	306
NspV	TTCGAA	1 cut(s)	209
PaeI	GCATGC	1 cut(s)	306
PcsI	WCGNNNNNNNCGW	2 cut(s)	345, 654
PctI	GAATGC	1 cut(s)	423
PdmI	GAANNNNTTC	1 cut(s)	40
PfeI	GAWTC	2 cut(s)	206, 327
PkrI	GCNGC	2 cut(s)	90, 100
Psp1406I	AACGTT	1 cut(s)	544
PspN4I	GGNNCC	1 cut(s)	7
PspPI	GGNCC	1 cut(s)	6
SaqAI	TTAA	5 cut(s)	126, 167, 312, 336, 522
SatI	GCNGC	2 cut(s)	89, 99
Sau3AI	GATC	6 cut(s)	219, 223, 282, 289, 645, 658
Sau96I	GGNCC	1 cut(s)	6
ScrFI	CCNGG	1 cut(s)	553
SetI	ASST	6 cut(s)	41, 63, 85, 103, 167, 547
SfcI	CTRYAG	1 cut(s)	534
SfuI	TTCGAA	1 cut(s)	209
SmlI	CTYRAG	3 cut(s)	166, 374, 662
SmoI	CTYRAG	3 cut(s)	166, 374, 662
SphI	GCATGC	1 cut(s)	306
Sse9I	AATT	4 cut(s)	172, 194, 404, 410
SspMI	CTAG	2 cut(s)	33, 62
StyD4I	CCNGG	1 cut(s)	551
TaiI	ACGT	1 cut(s)	547
TaqI	TCGA	7 cut(s)	44, 189, 209, 222, 285, 513, 640
TasI	AATT	4 cut(s)	172, 194, 404, 410
TfiI	GAWTC	2 cut(s)	206, 327
Tru1I	TTAA	5 cut(s)	126, 167, 312, 336, 522
Tru9I	TTAA	5 cut(s)	126, 167, 312, 336, 522
TseI	GCWGC	2 cut(s)	88, 98
TspDTI	ATGAA	6 cut(s)	66, 131, 251, 334, 356, 581
TspGWI	ACGGA	1 cut(s)	615
Vha464I	CTTAAG	1 cut(s)	166
XceI	RCATGY	1 cut(s)	306
XmnI	GAANNNNTTC	1 cut(s)	40
XspI	CTAG	2 cut(s)	33, 62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.