Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0006399

Physical Location & Seq

Genomic Coordinates Forward (+)

3371668 .. 3377042

Gene Structure 5375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2676 bp

ATGGAGTCCAAGATTTGCATGAATCCTTCGTGTAGGATGGCCAATACGCACGAATGGAAGAAAGGTTGGCCTTTGCGAACCGGTGGATTTGCCCATCTCTGCTACAAGTGCGGAGTTGAGTATGAGAATTCAGTTTACTGCAATACATTCCATTCTGGGGAAACTGGTTGGAGGGACTGCAATTTGTGCCACAAGCCTCTCCACTGTGGATGCATAGTCTCAGAGATATTGTATGAGTGCCTGGATTTTGGAGGTATAGGGTGCATTGGCTGTGCTTCTCAACCTCGCATGATTCAGGACGGTGATGTTTTAAATGGATTTGGTGGATTGAAAATAAGTGATTCCGGTGATCAGCAATCAACTGTTCCTCAGAATGGAGCATTAAGTGATACTGCTAATGAGGGAAAACTTTTGCAATTGTGTCAAGTCATGGAGGCTAATGAATCCAACCTTTCATCTCAATCTCAGAGAGGTGAAATAATTGTATCTCCTGTGCAAACCAAACGTGAAGAAGTTACTTATCCAAGGGGGGAAGTTGGCCCTGGATTTTCAAGTATCAGCAGGCCATCTTTTGGATCATTAACATTTGCCAAACCAGACAATGGTAGAATAATGATAGAGGTCAAAGATATGAATAAGCCATCCTCTGACCCGTCTTTGAGTATGACTTTGGGAGGCCCATCTGCAACTCCAAACTTTGCTCAACCCTTTACTGGGGGAATTTTGGAGAGAAGAGATCAGATTAAGACGCCTTCTTCCTTCCAACAGGGGCAAAAAATTCAGCCTATTTTTCCCAGACCCTTGAGACCTCCCCCTCCTGTTCATCATGTGCGTGTTGCAAGGCCACCGGCTGAAGGGCGAGGGAAGAGTCAGTTACTTCCTCGATACTGGCCAAGGATTACTGACCAAGAGCTGCAGAAATTAGCTGGAGATTTGAATTCTACTATTGTGCCACTGTTCGAGAAGGTACTGAGTGCCAGCGATGCAGGTCGAATTGGTCGTCTGGTTCTCCCAAAAGCATGTGCTGAGGCATACTTTCCTCCTATTTCTCAATCAGAAGGCCTTCCTATAAGGATTCAAGATGTCAAGGGTAATGAATGGACGTTTCAGTTCAGATTTTGGCCAAATAATAATAGCAGGATGTATGTTTTAGAAGGAGTAACGCCTTGCATACAGTCTATGCAACTTCAAGCTGGTGATACTGTGACATTCAGTCGGATAGATCCCGGAGGCAGACTTGTAATTGGGTTTCGTAAGGCATCAAGGTGTTTAGATGTGCAGGAATCCCAAACATCTTTCCTTCCCAATGGAACTCCTGGGGAAACTTCCTGTCCTAGCGTTGTTGAGAATCTGGTAACAGGAAGTGGTCACTCTAGTATTTATCAAACGAGTACAGGAAGCAAAGACCCTTACCTAAATGCTCTATCAGGACATTTGCATTTGGCTGATGGGGATACAAGTTTGCATGATAATGAGAACCATAGTCACTTTACAAGTGAGGATCTGCAGCAGAAGCCTGTGTCGAATTCTGACAAGAAGAGGGCCCGAAATATTGGGCCTAAAAGTAAGAGGTTGCTCTTGCATAGTGAAGATGTTCTGGAGCTGAGACTGACATGGGAAGAAGCACAGGACTTGCTTCGTCCACCCCCGAGTGTCAAACCAAGCATTGTCACTATAGAATCTGGCAATGTTCATTTTTTCCAGGAGCCCCCAGTTTTTGGGAAGAGATCTCTATTCATCGCCGAATCTGAGAGACAGGAACAATGGGCTCAGTGTGATGATTGCTCTAAGTGGCGGAGGTTGCCTGTTGACGTTCTTCTTCCTCCAAAGTGGACGTGCTCTGAAAATTCTTGGGATATAAACAGGTGCTCATGTTCTGCACCAGAGGAGATGAGCCAAAAGGAATTGGATAATCTTCTAAGACCAAGCAAAGATTTAAAGAAGCGAAGAATCGTAGTGAACCATAATGAAGCCCAGGAACACGAACCTTCTGGCTTGGATGCCCTGGCTAGTGCCAGTGCTGCCATTCTGGGAGATAGTGTGGATTACGCTGATGAACAATCAGTTGGAGCCACAACCAGACATCCGCGTCATCGCCCAGGTTGCACATGCATAGTATGTATTCAACCCCCAAGCGGGAAGGGCAAGCACAAGCCAACATGCACATGCAACGTGTGCATGACAGTAAAACGGCGCTTCAAAACCCTGATGATGAACAAGAGGAAACGCAAATCAGAACGTGAAATGGAGAATGCCCACAGGGATAATAATGACCACAAGGATGAATCAGAAATGAATGGTACGTCAACAGAGATTGAGTTGCATATGAATCACTTATCGGAGAATGGAAGCAGCTGCGAGAAGAGAATTCAAGCTGACGTGGCAGAAAGTTCATGCGCTGGACAAATTGATCTGAATTGTGAGCCCAAACACAATTATGTGCAGGTTTCAGGATTGAACTTGTTGAGACTCGCTGATGCTGTTGCTCAACAACCAGTAAAGAACAGCACAAAGGAAAGTGGCCTTGCAAACAGAATGTGCGAGCCACAGGCCGGTCTTGGTTCATCTTTACGTACACAAGATCCTGCGGAGACTGATAAACTCTTGTGTAATGAAGGCAGCCTTTCATCCGTGGCAGCGGCGTGGGACTTGGAGGGTAGAGGTGATGGGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B3 zf-CW

Protein Analysis

892

Amino Acids

98.34

Weight (kDa)

6.44

Isoelectric Point (pI)

51.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf_VAL1_N	PF25813	49 - 96	9.7e-22	VAL1-like, N-terminal zinc finger domain
B3	PF02362	320 - 420	9.5e-17	B3 DNA binding domain
zf-CW	PF07496	588 - 630	7e-11	CW-type Zinc Finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006399)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40520 FvH4_3g40520 FvH4_3g40520 FvH4_3g40520 FvH4_3g40520 FvH4_3g40520 FvH4_3g40520 FvH4_3g40520
malus_domestica	MD03G1051600.v1.1 MD11G1053500.v1.1 MD11G1053700.v1.1
prunus_persica	Prupe.6G041000_v2.0.a1 Prupe.6G041000_v2.0.a1 Prupe.6G041000_v2.0.a1
pyrus_communis	pycom03g04100 pycom11g04330
rosa_chinensis	RchiOBHm_Chr5g0073201
rosa_laevigata	RLG00000036373
rosa_multiflora	Rmu_sc0001887.1_g000012
rosa_roxburghii	Rroxscaffold_1G00007990
rosa_rugosa	Rorug05G0422000 Rorug05G0422100
rosa_samantha	Rh5AG478900 Rh5BG499600 Rh5CG522800 Rh5DG511700
rosa_wichuraiana	Rw5G044520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2088
Acc36I	ACCTGC	2 cut(s)	977, 2434
AccB7I	CCANNNNNTGG	3 cut(s)	572, 602, 1718
AccII	CGCG	1 cut(s)	2089
AciI	CCGC	6 cut(s)	111, 1795, 2087, 2136, 2588, 2639
AclWI	GGATC	4 cut(s)	583, 1217, 1509, 2576
AcoI	YGGCCR	3 cut(s)	39, 890, 1121
AcsI	RAATTY	7 cut(s)	127, 720, 777, 937, 1525, 1846, 2367
AcuI	CTGAAG	1 cut(s)	873
AcyI	GRCGYC	1 cut(s)	749
AfaI	GTAC	4 cut(s)	969, 1393, 2302, 2575
AflIII	ACRYGT	1 cut(s)	2172
AgeI	ACCGGT	1 cut(s)	80
AgsI	TTSAA	9 cut(s)	331, 552, 937, 1079, 1190, 2126, 2200, 2372, 2458
AhdI	GACNNNNNGTC	1 cut(s)	1212
AjiI	CACGTC	2 cut(s)	1836, 2380
AjnI	CCWGG	7 cut(s)	240, 541, 1315, 1701, 1974, 2004, 2098
AjuI	GAANNNNNNNTTGG	2 cut(s)	2049, 2081
AluBI	AGCT	6 cut(s)	913, 926, 1193, 1603, 2355, 2375
AluI	AGCT	6 cut(s)	913, 926, 1193, 1603, 2355, 2375
Alw21I	GWGCWC	2 cut(s)	1841, 1871
Alw26I	GTCTC	6 cut(s)	223, 799, 1600, 1747, 2461, 2585
AlwI	GGATC	4 cut(s)	583, 1217, 1509, 2576
Ama87I	CYCGRG	1 cut(s)	1648
ApaI	GGGCCC	1 cut(s)	1546
ApeKI	GCWGC	7 cut(s)	913, 1507, 2021, 2352, 2355, 2619, 2636
ApoI	RAATTY	7 cut(s)	127, 720, 777, 937, 1525, 1846, 2367
ArsI	GACNNNNNNTTYG	2 cut(s)	985, 1017
AsiGI	ACCGGT	1 cut(s)	80
Asp700I	GAANNNNTTC	2 cut(s)	1062, 1593
AspLEI	GCGC	2 cut(s)	2196, 2399
AspS9I	GGNCC	5 cut(s)	539, 677, 1542, 1543, 1556
AsuC2I	CCSGG	1 cut(s)	1227
AsuHPI	GGTGA	5 cut(s)	314, 359, 485, 1208, 2675
AvaI	CYCGRG	1 cut(s)	1648
BaeGI	GKGCMC	1 cut(s)	1546
BalI	TGGCCA	3 cut(s)	41, 892, 1123
BanII	GRGCYC	4 cut(s)	1546, 1710, 1771, 2427
Bbv12I	GWGCWC	2 cut(s)	1841, 1871
BbvCI	CCTCAGC	1 cut(s)	1026
BbvI	GCAGC	7 cut(s)	900, 1519, 2008, 2342, 2364, 2631, 2648
BccI	CCATC	7 cut(s)	31, 102, 574, 649, 688, 1442, 2660
BceAI	ACGGC	1 cut(s)	2207
BciT130I	CCWGG	7 cut(s)	242, 543, 1317, 1703, 1976, 2006, 2100
BciVI	GTATCC	1 cut(s)	1447
BclI	TGATCA	1 cut(s)	349
BcnI	CCSGG	1 cut(s)	1227
BcoDI	GTCTC	6 cut(s)	223, 799, 1600, 1747, 2461, 2585
BfaI	CTAG	3 cut(s)	1335, 1374, 2010
BfmI	CTRYAG	3 cut(s)	914, 1505, 1674
BfoI	RGCGCY	1 cut(s)	2197
BfuAI	ACCTGC	2 cut(s)	977, 2434
BfuI	GTATCC	1 cut(s)	1447
BglII	AGATCT	1 cut(s)	1727
BisI	GCNGC	8 cut(s)	914, 1508, 2022, 2353, 2356, 2620, 2637, 2640
BlsI	GCNGC	8 cut(s)	915, 1509, 2023, 2354, 2357, 2621, 2638, 2641
Bme1390I	CCNGG	8 cut(s)	242, 543, 1227, 1317, 1703, 1976, 2006, 2100
BmeRI	GACNNNNNGTC	1 cut(s)	1212
BmeT110I	CYCGRG	1 cut(s)	1648
BmgBI	CACGTC	2 cut(s)	1836, 2380
BmgT120I	GGNCC	5 cut(s)	539, 677, 1542, 1543, 1556
BmiI	GGNNCC	3 cut(s)	1544, 1707, 2071
BmrFI	CCNGG	8 cut(s)	242, 543, 1227, 1317, 1703, 1976, 2006, 2100
BmrI	ACTGGG	2 cut(s)	723, 1706
BmsI	GCATC	5 cut(s)	200, 973, 1268, 1990, 2467
BmuI	ACTGGG	2 cut(s)	723, 1706
BpmI	CTGGAG	2 cut(s)	948, 1619
Bpu10I	CCTNAGC	1 cut(s)	1026
BpuEI	CTTGAG	1 cut(s)	823
BpuMI	CCSGG	1 cut(s)	1227
BsaAI	YACGTR	1 cut(s)	2573
BsaHI	GRCGYC	1 cut(s)	749
BsaI	GGTCTC	1 cut(s)	799
BsaJI	CCNNGG	8 cut(s)	524, 541, 893, 1316, 1974, 2004, 2098, 2631
BsaWI	WCCGGW	2 cut(s)	80, 344
BsaXI	ACNNNNNCTCC	2 cut(s)	2025, 2055
Bse118I	RCCGGY	3 cut(s)	80, 847, 2552
Bse1I	ACTGG	6 cut(s)	169, 718, 893, 1712, 2016, 2495
Bse3DI	GCAATG	1 cut(s)	1693
BseBI	CCWGG	7 cut(s)	242, 543, 1317, 1703, 1976, 2006, 2100
BseDI	CCNNGG	8 cut(s)	524, 541, 893, 1316, 1974, 2004, 2098, 2631
BseGI	GGATG	8 cut(s)	42, 215, 641, 1146, 2005, 2083, 2287, 2627
BseMI	GCAATG	1 cut(s)	1693
BseMII	CTCAG	8 cut(s)	234, 383, 479, 962, 1017, 1595, 1740, 1784
BseNI	ACTGG	6 cut(s)	169, 718, 893, 1712, 2016, 2495
BseRI	GAGGAG	1 cut(s)	1901
BseSI	GKGCMC	1 cut(s)	1546
BseXI	GCAGC	7 cut(s)	900, 1519, 2008, 2342, 2364, 2631, 2648
BsgI	GTGCAG	3 cut(s)	1298, 1863, 2462
Bsh1236I	CGCG	1 cut(s)	2089
BshTI	ACCGGT	1 cut(s)	80
BsiHKAI	GWGCWC	2 cut(s)	1841, 1871
BsiHKCI	CYCGRG	1 cut(s)	1648
BsiSI	CCGG	5 cut(s)	81, 345, 848, 1227, 2553
BslFI	GGGAC	2 cut(s)	188, 2660
BsmAI	GTCTC	6 cut(s)	223, 799, 1600, 1747, 2461, 2585
BsmFI	GGGAC	2 cut(s)	188, 2660
BsmI	GAATGC	1 cut(s)	2257
Bso31I	GGTCTC	1 cut(s)	799
BsoBI	CYCGRG	1 cut(s)	1648
Bsp120I	GGGCCC	1 cut(s)	1542
Bsp1286I	GDGCHC	6 cut(s)	1546, 1710, 1771, 1841, 1871, 2427
Bsp143I	GATC	8 cut(s)	349, 575, 736, 1222, 1501, 1727, 2410, 2581
BspACI	CCGC	6 cut(s)	111, 1795, 2087, 2136, 2588, 2639
BspCNI	CTCAG	8 cut(s)	233, 382, 478, 963, 1018, 1596, 1741, 1783
BspFNI	CGCG	1 cut(s)	2089
BspLI	GGNNCC	3 cut(s)	1544, 1707, 2071
BspMAI	CTGCAG	2 cut(s)	918, 1509
BspMI	ACCTGC	2 cut(s)	977, 2434
BspPI	GGATC	4 cut(s)	583, 1217, 1509, 2576
BspTNI	GGTCTC	1 cut(s)	799
BsrDI	GCAATG	1 cut(s)	1693
BsrFI	RCCGGY	3 cut(s)	80, 847, 2552
BsrI	ACTGG	6 cut(s)	169, 718, 893, 1712, 2016, 2495
BssAI	RCCGGY	3 cut(s)	80, 847, 2552
BssECI	CCNNGG	8 cut(s)	524, 541, 893, 1316, 1974, 2004, 2098, 2631
BssMI	GATC	8 cut(s)	349, 575, 736, 1222, 1501, 1727, 2410, 2581
BssNI	GRCGYC	1 cut(s)	749
BssT1I	CCWWGG	2 cut(s)	524, 893
Bst2UI	CCWGG	7 cut(s)	242, 543, 1317, 1703, 1976, 2006, 2100
Bst4CI	ACNGT	7 cut(s)	206, 302, 364, 957, 1176, 1204, 2185
Bst6I	CTCTTC	5 cut(s)	727, 860, 1532, 1718, 2357
BstACI	GRCGYC	1 cut(s)	749
BstAPI	GCANNNNNTGC	2 cut(s)	186, 2175
BstBAI	YACGTR	1 cut(s)	2573
BstC8I	GCNNGC	4 cut(s)	563, 979, 2147, 2543
BstDSI	CCRYGG	1 cut(s)	2631
BstF5I	GGATG	8 cut(s)	42, 215, 641, 1146, 2005, 2083, 2287, 2627
BstFNI	CGCG	1 cut(s)	2089
BstH2I	RGCGCY	1 cut(s)	2197
BstHHI	GCGC	2 cut(s)	2196, 2399
BstKTI	GATC	8 cut(s)	352, 578, 739, 1225, 1504, 1730, 2413, 2584
BstMAI	GTCTC	6 cut(s)	223, 799, 1600, 1747, 2461, 2585
BstMBI	GATC	8 cut(s)	349, 575, 736, 1222, 1501, 1727, 2410, 2581
BstNI	CCWGG	7 cut(s)	242, 543, 1317, 1703, 1976, 2006, 2100
BstNSI	RCATGY	4 cut(s)	1023, 2112, 2163, 2169
BstSCI	CCNGG	8 cut(s)	240, 541, 1225, 1315, 1701, 1974, 2004, 2098
BstSFI	CTRYAG	3 cut(s)	914, 1505, 1674
BstSLI	GKGCMC	1 cut(s)	1546
BstSNI	TACGTA	1 cut(s)	2573
BstUI	CGCG	1 cut(s)	2089
BstV1I	GCAGC	7 cut(s)	900, 1519, 2008, 2342, 2364, 2631, 2648
BstX2I	RGATCY	4 cut(s)	1222, 1501, 1727, 2581
BstYI	RGATCY	4 cut(s)	1222, 1501, 1727, 2581
BsuI	GTATCC	1 cut(s)	1447
BtgI	CCRYGG	1 cut(s)	2631
BtgZI	GCGATG	3 cut(s)	996, 1723, 2078
BtrI	CACGTC	2 cut(s)	1836, 2380
BtsCI	GGATG	8 cut(s)	42, 215, 641, 1146, 2005, 2083, 2287, 2627
BtsIMutI	CAGTG	4 cut(s)	202, 953, 1778, 2023
BveI	ACCTGC	2 cut(s)	977, 2434
Cac8I	GCNNGC	4 cut(s)	563, 979, 2147, 2543
CfoI	GCGC	2 cut(s)	2196, 2399
Cfr10I	RCCGGY	3 cut(s)	80, 847, 2552
Cfr13I	GGNCC	5 cut(s)	539, 677, 1542, 1543, 1556
CseI	GACGC	2 cut(s)	757, 2078
Csp6I	GTAC	4 cut(s)	968, 1392, 2301, 2574
CspAI	ACCGGT	1 cut(s)	80
CviQI	GTAC	4 cut(s)	968, 1392, 2301, 2574
DpnI	GATC	8 cut(s)	351, 577, 738, 1224, 1503, 1729, 2412, 2583
DpnII	GATC	8 cut(s)	349, 575, 736, 1222, 1501, 1727, 2410, 2581
DraI	TTTAAA	2 cut(s)	312, 1938
DrdI	GACNNNNNNGTC	1 cut(s)	2088
DriI	GACNNNNNGTC	1 cut(s)	1212
DseDI	GACNNNNNNGTC	1 cut(s)	2088
EaeI	YGGCCR	3 cut(s)	39, 890, 1121
Eam1104I	CTCTTC	5 cut(s)	727, 860, 1532, 1718, 2357
Eam1105I	GACNNNNNGTC	1 cut(s)	1212
EarI	CTCTTC	5 cut(s)	727, 860, 1532, 1718, 2357
EciI	GGCGGA	1 cut(s)	1810
Eco105I	TACGTA	1 cut(s)	2573
Eco130I	CCWWGG	2 cut(s)	524, 893
Eco147I	AGGCCT	1 cut(s)	1062
Eco24I	GRGCYC	4 cut(s)	1546, 1710, 1771, 2427
Eco31I	GGTCTC	1 cut(s)	799
Eco57I	CTGAAG	1 cut(s)	873
Eco88I	CYCGRG	1 cut(s)	1648
EcoO109I	RGGNCCY	1 cut(s)	1542
EcoRI	GAATTC	4 cut(s)	127, 937, 1525, 2367
EcoRII	CCWGG	7 cut(s)	240, 541, 1315, 1701, 1974, 2004, 2098
EcoT14I	CCWWGG	2 cut(s)	524, 893
EcoT22I	ATGCAT	2 cut(s)	215, 2114
EcoT38I	GRGCYC	4 cut(s)	1546, 1710, 1771, 2427
ErhI	CCWWGG	2 cut(s)	524, 893
FalI	AAGNNNNNCTT	2 cut(s)	2607, 2639
FaqI	GGGAC	2 cut(s)	188, 2660
FauI	CCCGC	1 cut(s)	2129
FauNDI	CATATG	1 cut(s)	2325
FbaI	TGATCA	1 cut(s)	349
Fnu4HI	GCNGC	8 cut(s)	914, 1508, 2022, 2353, 2356, 2620, 2637, 2640
FokI	GGATG	8 cut(s)	49, 222, 628, 1153, 2012, 2070, 2294, 2614
FriOI	GRGCYC	4 cut(s)	1546, 1710, 1771, 2427
Fsp4HI	GCNGC	8 cut(s)	914, 1508, 2022, 2353, 2356, 2620, 2637, 2640
FspBI	CTAG	3 cut(s)	1335, 1374, 2010
GlaI	GCGC	2 cut(s)	2195, 2398
GluI	GCNGC	8 cut(s)	914, 1508, 2022, 2353, 2356, 2620, 2637, 2640
GsuI	CTGGAG	2 cut(s)	948, 1619
HaeII	RGCGCY	1 cut(s)	2197
HapII	CCGG	5 cut(s)	81, 345, 848, 1227, 2553
HgaI	GACGC	2 cut(s)	757, 2078
HhaI	GCGC	2 cut(s)	2196, 2399
Hin1I	GRCGYC	1 cut(s)	749
Hin6I	GCGC	2 cut(s)	2194, 2397
HinP1I	GCGC	2 cut(s)	2194, 2397
HincII	GTYRAC	2 cut(s)	1810, 2307
HindII	GTYRAC	2 cut(s)	1810, 2307
HpaII	CCGG	5 cut(s)	81, 345, 848, 1227, 2553
HphI	GGTGA	5 cut(s)	314, 359, 485, 1208, 2675
Hpy166II	GTNNAC	7 cut(s)	136, 1643, 1810, 1833, 1960, 2307, 2576
Hpy188III	TCNNGA	6 cut(s)	296, 961, 1079, 1428, 1598, 2451
Hpy8I	GTNNAC	7 cut(s)	136, 1643, 1810, 1833, 1960, 2307, 2576
HpyCH4III	ACNGT	7 cut(s)	206, 302, 364, 957, 1176, 1204, 2185
HpyCH4IV	ACGT	9 cut(s)	505, 1103, 1812, 1835, 2172, 2239, 2303, 2379, 2572
HpySE526I	ACGT	9 cut(s)	505, 1103, 1812, 1835, 2172, 2239, 2303, 2379, 2572
Hsp92I	GRCGYC	1 cut(s)	749
HspAI	GCGC	2 cut(s)	2194, 2397
Ksp22I	TGATCA	1 cut(s)	349
Kzo9I	GATC	8 cut(s)	349, 575, 736, 1222, 1501, 1727, 2410, 2581
LmnI	GCTCC	4 cut(s)	377, 1600, 1705, 2069
Lsp1109I	GCAGC	7 cut(s)	900, 1519, 2008, 2342, 2364, 2631, 2648
LweI	GCATC	5 cut(s)	200, 973, 1268, 1990, 2467
MaeI	CTAG	3 cut(s)	1335, 1374, 2010
MaeII	ACGT	9 cut(s)	505, 1103, 1812, 1835, 2172, 2239, 2303, 2379, 2572
MaeIII	GTNAC	8 cut(s)	514, 873, 1159, 1204, 1354, 1367, 1484, 1669
MalI	GATC	8 cut(s)	351, 577, 738, 1224, 1503, 1729, 2412, 2583
MboI	GATC	8 cut(s)	349, 575, 736, 1222, 1501, 1727, 2410, 2581
MfeI	CAATTG	1 cut(s)	416
MflI	RGATCY	4 cut(s)	1222, 1501, 1727, 2581
MhlI	GDGCHC	6 cut(s)	1546, 1710, 1771, 1841, 1871, 2427
MlsI	TGGCCA	3 cut(s)	41, 892, 1123
MluNI	TGGCCA	3 cut(s)	41, 892, 1123
MlyI	GAGTC	3 cut(s)	14, 877, 2463
MmeI	TCCRAC	5 cut(s)	149, 471, 787, 1196, 2047
Mox20I	TGGCCA	3 cut(s)	41, 892, 1123
Mph1103I	ATGCAT	2 cut(s)	215, 2114
MroXI	GAANNNNTTC	2 cut(s)	1062, 1593
MscI	TGGCCA	3 cut(s)	41, 892, 1123
MseI	TTAA	5 cut(s)	311, 383, 581, 744, 1937
MslI	CAYNNNNRTG	6 cut(s)	831, 1264, 1470, 2164, 2280, 2436
Msp20I	TGGCCA	3 cut(s)	41, 892, 1123
MspA1I	CMGCKG	2 cut(s)	2355, 2639
MspI	CCGG	5 cut(s)	81, 345, 848, 1227, 2553
MspR9I	CCNGG	8 cut(s)	242, 543, 1227, 1317, 1703, 1976, 2006, 2100
MunI	CAATTG	1 cut(s)	416
Mva1269I	GAATGC	1 cut(s)	2257
MvaI	CCWGG	7 cut(s)	242, 543, 1317, 1703, 1976, 2006, 2100
MvnI	CGCG	1 cut(s)	2089
NciI	CCSGG	1 cut(s)	1227
NdeI	CATATG	1 cut(s)	2325
NdeII	GATC	8 cut(s)	349, 575, 736, 1222, 1501, 1727, 2410, 2581
NlaIV	GGNNCC	3 cut(s)	1544, 1707, 2071
NmuCI	GTSAC	4 cut(s)	1204, 1367, 1484, 1669
NsiI	ATGCAT	2 cut(s)	215, 2114
NspI	RCATGY	4 cut(s)	1023, 2112, 2163, 2169
PceI	AGGCCT	1 cut(s)	1062
PcsI	WCGNNNNNNNCGW	1 cut(s)	997
PctI	GAATGC	1 cut(s)	2257
PdmI	GAANNNNTTC	2 cut(s)	1062, 1593
PflMI	CCANNNNNTGG	3 cut(s)	572, 602, 1718
PfoI	TCCNGGA	2 cut(s)	1225, 1701
PinAI	ACCGGT	1 cut(s)	80
PkrI	GCNGC	8 cut(s)	915, 1509, 2023, 2354, 2357, 2621, 2638, 2641
PleI	GAGTC	3 cut(s)	13, 876, 2463
PpsI	GAGTC	3 cut(s)	13, 876, 2463
Ppu21I	YACGTR	1 cut(s)	2573
Psp6I	CCWGG	7 cut(s)	240, 541, 1315, 1701, 1974, 2004, 2098
PspGI	CCWGG	7 cut(s)	240, 541, 1315, 1701, 1974, 2004, 2098
PspN4I	GGNNCC	3 cut(s)	1544, 1707, 2071
PspOMI	GGGCCC	1 cut(s)	1542
PspPI	GGNCC	5 cut(s)	539, 677, 1542, 1543, 1556
PstI	CTGCAG	2 cut(s)	918, 1509
PsuI	RGATCY	4 cut(s)	1222, 1501, 1727, 2581
PvuII	CAGCTG	1 cut(s)	2355
RsaI	GTAC	4 cut(s)	969, 1393, 2302, 2575
RsaNI	GTAC	4 cut(s)	968, 1392, 2301, 2574
RseI	CAYNNNNRTG	6 cut(s)	831, 1264, 1470, 2164, 2280, 2436
SaqAI	TTAA	5 cut(s)	311, 383, 581, 744, 1937
SatI	GCNGC	8 cut(s)	914, 1508, 2022, 2353, 2356, 2620, 2637, 2640
Sau3AI	GATC	8 cut(s)	349, 575, 736, 1222, 1501, 1727, 2410, 2581
Sau96I	GGNCC	5 cut(s)	539, 677, 1542, 1543, 1556
SchI	GAGTC	3 cut(s)	14, 877, 2463
ScrFI	CCNGG	8 cut(s)	242, 543, 1227, 1317, 1703, 1976, 2006, 2100
SduI	GDGCHC	6 cut(s)	1546, 1710, 1771, 1841, 1871, 2427
SfaNI	GCATC	5 cut(s)	200, 973, 1268, 1990, 2467
SfcI	CTRYAG	3 cut(s)	914, 1505, 1674
SmiMI	CAYNNNNRTG	6 cut(s)	831, 1264, 1470, 2164, 2280, 2436
SmlI	CTYRAG	1 cut(s)	802
SmoI	CTYRAG	1 cut(s)	802
SnaBI	TACGTA	1 cut(s)	2573
SseBI	AGGCCT	1 cut(s)	1062
SsiI	CCGC	6 cut(s)	111, 1795, 2087, 2136, 2588, 2639
SspI	AATATT	1 cut(s)	1552
SspMI	CTAG	3 cut(s)	1335, 1374, 2010
StuI	AGGCCT	1 cut(s)	1062
StyD4I	CCNGG	8 cut(s)	240, 541, 1225, 1315, 1701, 1974, 2004, 2098
StyI	CCWWGG	2 cut(s)	524, 893
TaaI	ACNGT	7 cut(s)	206, 302, 364, 957, 1176, 1204, 2185
TaiI	ACGT	9 cut(s)	508, 1106, 1815, 1838, 2175, 2242, 2306, 2382, 2575
TaqI	TCGA	4 cut(s)	883, 960, 991, 1523
TatI	WGTACW	1 cut(s)	1391
TauI	GCSGC	1 cut(s)	2642
Tru1I	TTAA	5 cut(s)	311, 383, 581, 744, 1937
Tru9I	TTAA	5 cut(s)	311, 383, 581, 744, 1937
TscAI	CASTG	4 cut(s)	209, 960, 1778, 2023
TseFI	GTSAC	4 cut(s)	1204, 1367, 1484, 1669
TseI	GCWGC	7 cut(s)	913, 1507, 2021, 2352, 2355, 2619, 2636
Tsp45I	GTSAC	4 cut(s)	1204, 1367, 1484, 1669
TspGWI	ACGGA	1 cut(s)	2620
TspRI	CASTG	4 cut(s)	209, 960, 1778, 2023
Van91I	CCANNNNNTGG	3 cut(s)	572, 602, 1718
XapI	RAATTY	7 cut(s)	127, 720, 777, 937, 1525, 1846, 2367
XceI	RCATGY	4 cut(s)	1023, 2112, 2163, 2169
XmnI	GAANNNNTTC	2 cut(s)	1062, 1593
XspI	CTAG	3 cut(s)	1335, 1374, 2010
Zsp2I	ATGCAT	2 cut(s)	215, 2114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.