Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0005857

Physical Location & Seq

Genomic Coordinates Reverse (-)

3647762 .. 3650380

Gene Structure 2619 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGACAATGAGATGCACCTACATGACGGATACATGTATTGTCCTATAAAAATTTCAACTTTAAGCCACACATTTGAGCTCTCCTACAAGCTTGCCTGGCAGGTGAGTGAGGGAGGGAGGGGGAGCGGGAAAATGGCAGTTCCCATATTCCGGGCCTCAATTCCGAAGTCTCACCCTCTCATTCACTCCATTTCCTCAGCTCTATCACTCACTGATGAAACTTGGAAGAGGAAAAGATTGCTATCCTGCTGTGCTGCTTCATCGGAACTCAAACCATTTCGGCCAGAGCTGTGTTTCTCTGTTGGAACTTATCTTATTCCACATCCCAACAAGATTGAAAAAGGTGGGGAAGATGCTTTCTTTGTGAGCAGCTACAATGGGGGAGTTCTTGCTGTTGCTGATGGCGTCTCCGGTTGGGCTGAACAGGATGTAGATCCTTCATTGTTCCCGAAAGAATTGATGGCCAATGCCTCAAATTTTGTGGGAGATGTGGAGGTGAACAACGATCCTCGGATTCTGATAGGAAAAGCACATGCTTATACCTCTTCGATAGGTTCTGCTACGGTAATGATTGCCATGCTGGAGAGGGACGGGATTCTGAAAATCGCGAATGTTGGGGATTGCGGATTAAGGGTTATTCGTGAAGGTAAAATCAAATTTTCCACATCTCCACAAGAACACTATTTCGATTGTCCATACCAACTTAGTTCAGAGATTGTTGGCCAAACATATCAGGATGCGATGGTTTCCAATGTTGAGTTGATGGAAGGAGACACCATAGTTATGGGCTCAGACGGACTTTTTGACAATGTTTTCGACCATGAAATTGCTTTGACAGTGGCCGGACACAGAGACGTTGCTGAGGCTGCAAAGGCATTAGCTAATCTGGCAAACAATCATTCGTTGGATTCAAACTTCGATTCTCCCTACTCCATGGAGGCTAGATCAAGGGGTTTCGAGCCTCCTTTGTGGAAGAAGATTCTCGGAATGAAGCTTACAGGTGGAAAGCCAGATGATATCACTGTGATTGTTGGTCAGGTTGTAAGCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0016043 GO:0016311 GO:0019538 GO:0035970 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0061024 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071840 GO:0104004 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoIIE

Protein Analysis

351

Amino Acids

38.15

Weight (kDa)

5.38

Isoelectric Point (pI)

34.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30170 AT2G30170 AT2G30170 AT2G30170 AT2G30170 AT2G30170 AT2G30170
fragaria_vesca	FvH4_3g39680 FvH4_3g39680 FvH4_3g39680 FvH4_3g39680
malus_domestica	MD03G1055500.v1.1 MD11G1056600.v1.1
prunus_persica	Prupe.6G049100_v2.0.a1 Prupe.6G049100_v2.0.a1
pyrus_communis	pycom11g04770
rosa_chinensis	RchiOBHm_Chr5g0071531
rosa_laevigata	RLG00000036222
rosa_multiflora	Rmu_sc0041629.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009620
rosa_rugosa	Rorug05G0412900 Rorug05G0413000 Rorug05G0413100
rosa_samantha	Rh5AG468900 Rh5BG488200 Rh5CG512300 Rh5DG499000
rosa_wichuraiana	Rw5G043580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	91
Acc36I	ACCTGC	1 cut(s)	91
AccBSI	CCGCTC	1 cut(s)	126
AccII	CGCG	1 cut(s)	608
AciI	CCGC	2 cut(s)	126, 624
AclWI	GGATC	2 cut(s)	428, 500
AcoI	YGGCCR	4 cut(s)	281, 462, 721, 840
AcsI	RAATTY	3 cut(s)	51, 475, 656
AcyI	GRCGYC	1 cut(s)	405
AfiI	CCNNNNNNNGG	1 cut(s)	150
AflIII	ACRYGT	1 cut(s)	33
AgsI	TTSAA	3 cut(s)	57, 338, 912
AjnI	CCWGG	1 cut(s)	95
AluBI	AGCT	8 cut(s)	79, 91, 200, 289, 372, 881, 994, 1047
AluI	AGCT	8 cut(s)	79, 91, 200, 289, 372, 881, 994, 1047
Alw21I	GWGCWC	1 cut(s)	81
Alw26I	GTCTC	4 cut(s)	174, 412, 765, 846
AlwI	GGATC	2 cut(s)	428, 500
AoxI	GGCC	5 cut(s)	153, 281, 462, 721, 840
ApeKI	GCWGC	3 cut(s)	254, 369, 866
ApoI	RAATTY	3 cut(s)	51, 475, 656
ArsI	GACNNNNNNTTYG	4 cut(s)	785, 797, 817, 829
AspS9I	GGNCC	1 cut(s)	153
AsuC2I	CCSGG	1 cut(s)	152
AsuHPI	GGTGA	3 cut(s)	115, 164, 508
BalI	TGGCCA	2 cut(s)	464, 723
BanII	GRGCYC	2 cut(s)	81, 791
Bbv12I	GWGCWC	1 cut(s)	81
BbvCI	CCTCAGC	2 cut(s)	196, 861
BbvI	GCAGC	3 cut(s)	241, 381, 853
BccI	CCATC	4 cut(s)	395, 454, 736, 757
BciT130I	CCWGG	1 cut(s)	97
BciVI	GTATCC	1 cut(s)	23
BcnI	CCSGG	1 cut(s)	152
BcoDI	GTCTC	4 cut(s)	174, 412, 765, 846
BfaI	CTAG	1 cut(s)	942
BfuAI	ACCTGC	1 cut(s)	91
BfuI	GTATCC	1 cut(s)	23
BisI	GCNGC	3 cut(s)	255, 370, 867
BlsI	GCNGC	3 cut(s)	256, 371, 868
Bme1390I	CCNGG	2 cut(s)	97, 152
BmgT120I	GGNCC	1 cut(s)	153
BmrFI	CCNGG	2 cut(s)	97, 152
BmsI	GCATC	3 cut(s)	3, 343, 727
BpmI	CTGGAG	1 cut(s)	602
Bpu10I	CCTNAGC	2 cut(s)	196, 861
BpuMI	CCSGG	1 cut(s)	152
BsaBI	GATNNNNATC	2 cut(s)	241, 432
BsaHI	GRCGYC	1 cut(s)	405
BsaJI	CCNNGG	2 cut(s)	509, 933
BsaWI	WCCGGW	1 cut(s)	410
Bsc4I	CCNNNNNNNGG	1 cut(s)	150
Bse8I	GATNNNNATC	2 cut(s)	241, 432
BseBI	CCWGG	1 cut(s)	97
BseDI	CCNNGG	2 cut(s)	509, 933
BseGI	GGATG	3 cut(s)	322, 433, 742
BseJI	GATNNNNATC	2 cut(s)	241, 432
BseLI	CCNNNNNNNGG	1 cut(s)	150
BseMII	CTCAG	3 cut(s)	210, 804, 852
BseXI	GCAGC	3 cut(s)	241, 381, 853
Bsh1236I	CGCG	1 cut(s)	608
BshFI	GGCC	5 cut(s)	155, 283, 464, 723, 842
BsiHKAI	GWGCWC	1 cut(s)	81
BsiSI	CCGG	3 cut(s)	151, 411, 843
BslFI	GGGAC	1 cut(s)	602
BslI	CCNNNNNNNGG	1 cut(s)	150
BsmAI	GTCTC	4 cut(s)	174, 412, 765, 846
BsmBI	CGTCTC	2 cut(s)	412, 846
BsmFI	GGGAC	1 cut(s)	602
BsnI	GGCC	5 cut(s)	155, 283, 464, 723, 842
Bsp1286I	GDGCHC	2 cut(s)	81, 791
Bsp143I	GATC	3 cut(s)	433, 505, 944
Bsp19I	CCATGG	1 cut(s)	933
Bsp68I	TCGCGA	1 cut(s)	608
BspACI	CCGC	2 cut(s)	126, 624
BspANI	GGCC	5 cut(s)	155, 283, 464, 723, 842
BspCNI	CTCAG	3 cut(s)	209, 803, 853
BspFNI	CGCG	1 cut(s)	608
BspMI	ACCTGC	1 cut(s)	91
BspPI	GGATC	2 cut(s)	428, 500
BsrBI	CCGCTC	1 cut(s)	126
BssECI	CCNNGG	2 cut(s)	509, 933
BssMI	GATC	3 cut(s)	433, 505, 944
BssNI	GRCGYC	1 cut(s)	405
BssT1I	CCWWGG	1 cut(s)	933
Bst2UI	CCWGG	1 cut(s)	97
Bst4CI	ACNGT	3 cut(s)	565, 838, 1024
Bst6I	CTCTTC	2 cut(s)	221, 550
BstACI	GRCGYC	1 cut(s)	405
BstC8I	GCNNGC	1 cut(s)	93
BstDEI	CTNAG	4 cut(s)	196, 704, 790, 861
BstDSI	CCRYGG	1 cut(s)	933
BstF5I	GGATG	3 cut(s)	322, 433, 742
BstFNI	CGCG	1 cut(s)	608
BstKTI	GATC	3 cut(s)	436, 508, 947
BstMAI	GTCTC	4 cut(s)	174, 412, 765, 846
BstMBI	GATC	3 cut(s)	433, 505, 944
BstMWI	GCNNNNNNNGC	4 cut(s)	97, 866, 872, 887
BstNI	CCWGG	1 cut(s)	97
BstNSI	RCATGY	2 cut(s)	37, 536
BstSCI	CCNGG	2 cut(s)	95, 150
BstUI	CGCG	1 cut(s)	608
BstV1I	GCAGC	3 cut(s)	241, 381, 853
BstX2I	RGATCY	1 cut(s)	433
BstXI	CCANNNNNNTGG	1 cut(s)	784
BstYI	RGATCY	1 cut(s)	433
BsuI	GTATCC	1 cut(s)	23
BsuRI	GGCC	5 cut(s)	155, 283, 464, 723, 842
BtgI	CCRYGG	1 cut(s)	933
BtgZI	GCGATG	1 cut(s)	755
BtsCI	GGATG	3 cut(s)	322, 433, 742
BtsIMutI	CAGTG	3 cut(s)	210, 843, 1020
BtuMI	TCGCGA	1 cut(s)	608
BveI	ACCTGC	1 cut(s)	91
Cac8I	GCNNGC	1 cut(s)	93
Cfr13I	GGNCC	1 cut(s)	153
CseI	GACGC	1 cut(s)	394
CspCI	CAANNNNNGTGG	2 cut(s)	462, 497
CviAII	CATG	6 cut(s)	23, 34, 533, 577, 821, 934
DdeI	CTNAG	4 cut(s)	196, 704, 790, 861
DpnI	GATC	3 cut(s)	435, 507, 946
DpnII	GATC	3 cut(s)	433, 505, 944
EaeI	YGGCCR	4 cut(s)	281, 462, 721, 840
Eam1104I	CTCTTC	2 cut(s)	221, 550
EarI	CTCTTC	2 cut(s)	221, 550
Ecl136II	GAGCTC	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	933
Eco24I	GRGCYC	2 cut(s)	81, 791
Eco32I	GATATC	1 cut(s)	1018
Eco53kI	GAGCTC	1 cut(s)	79
EcoICRI	GAGCTC	1 cut(s)	79
EcoRII	CCWGG	1 cut(s)	95
EcoRV	GATATC	1 cut(s)	1018
EcoT14I	CCWWGG	1 cut(s)	933
EcoT38I	GRGCYC	2 cut(s)	81, 791
ErhI	CCWWGG	1 cut(s)	933
Esp3I	CGTCTC	2 cut(s)	412, 846
FaeI	CATG	6 cut(s)	26, 37, 536, 580, 824, 937
FaqI	GGGAC	1 cut(s)	602
FatI	CATG	6 cut(s)	22, 33, 532, 576, 820, 933
FauI	CCCGC	1 cut(s)	119
Fnu4HI	GCNGC	3 cut(s)	255, 370, 867
FokI	GGATG	3 cut(s)	309, 440, 749
FriOI	GRGCYC	2 cut(s)	81, 791
Fsp4HI	GCNGC	3 cut(s)	255, 370, 867
FspBI	CTAG	1 cut(s)	942
GluI	GCNGC	3 cut(s)	255, 370, 867
GsuI	CTGGAG	1 cut(s)	602
HaeIII	GGCC	5 cut(s)	155, 283, 464, 723, 842
HapII	CCGG	3 cut(s)	151, 411, 843
HgaI	GACGC	1 cut(s)	394
Hin1I	GRCGYC	1 cut(s)	405
Hin1II	CATG	6 cut(s)	26, 37, 536, 580, 824, 937
HindIII	AAGCTT	3 cut(s)	89, 992, 1045
HinfI	GANTC	5 cut(s)	514, 595, 908, 920, 979
HpaII	CCGG	3 cut(s)	151, 411, 843
HphI	GGTGA	3 cut(s)	115, 164, 508
Hpy166II	GTNNAC	1 cut(s)	499
Hpy188I	TCNGA	8 cut(s)	165, 265, 513, 519, 600, 712, 793, 986
Hpy188III	TCNNGA	4 cut(s)	448, 607, 641, 734
Hpy8I	GTNNAC	1 cut(s)	499
HpyAV	CCTTC	3 cut(s)	447, 638, 761
HpyCH4III	ACNGT	3 cut(s)	565, 838, 1024
HpyCH4IV	ACGT	1 cut(s)	855
HpyCH4V	TGCA	2 cut(s)	16, 869
HpyF10VI	GCNNNNNNNGC	4 cut(s)	97, 866, 872, 887
HpyF3I	CTNAG	4 cut(s)	196, 704, 790, 861
HpySE526I	ACGT	1 cut(s)	855
Hsp92I	GRCGYC	1 cut(s)	405
Hsp92II	CATG	6 cut(s)	26, 37, 536, 580, 824, 937
Kzo9I	GATC	3 cut(s)	433, 505, 944
LmnI	GCTCC	1 cut(s)	123
Lsp1109I	GCAGC	3 cut(s)	241, 381, 853
LweI	GCATC	3 cut(s)	3, 343, 727
MaeI	CTAG	1 cut(s)	942
MaeII	ACGT	1 cut(s)	855
MalI	GATC	3 cut(s)	435, 507, 946
MbiI	CCGCTC	1 cut(s)	126
MboI	GATC	3 cut(s)	433, 505, 944
MboII	GAAGA	5 cut(s)	238, 362, 537, 985, 988
MflI	RGATCY	1 cut(s)	433
MhlI	GDGCHC	2 cut(s)	81, 791
MlsI	TGGCCA	2 cut(s)	464, 723
MluCI	AATT	6 cut(s)	51, 159, 455, 475, 656, 825
MluNI	TGGCCA	2 cut(s)	464, 723
MmeI	TCCRAC	2 cut(s)	283, 885
Mox20I	TGGCCA	2 cut(s)	464, 723
MscI	TGGCCA	2 cut(s)	464, 723
MseI	TTAA	2 cut(s)	62, 629
MslI	CAYNNNNRTG	2 cut(s)	21, 782
Msp20I	TGGCCA	2 cut(s)	464, 723
MspI	CCGG	3 cut(s)	151, 411, 843
MspR9I	CCNGG	2 cut(s)	97, 152
MvaI	CCWGG	1 cut(s)	97
MvnI	CGCG	1 cut(s)	608
MwoI	GCNNNNNNNGC	4 cut(s)	97, 866, 872, 887
NciI	CCSGG	1 cut(s)	152
NcoI	CCATGG	1 cut(s)	933
NdeII	GATC	3 cut(s)	433, 505, 944
NlaIII	CATG	6 cut(s)	26, 37, 536, 580, 824, 937
NruI	TCGCGA	1 cut(s)	608
NspI	RCATGY	2 cut(s)	37, 536
PaqCI	CACCTGC	1 cut(s)	91
PciI	ACATGT	1 cut(s)	33
PfeI	GAWTC	5 cut(s)	514, 595, 908, 920, 979
PkrI	GCNGC	3 cut(s)	256, 371, 868
PscI	ACATGT	1 cut(s)	33
Psp124BI	GAGCTC	1 cut(s)	81
Psp6I	CCWGG	1 cut(s)	95
PspGI	CCWGG	1 cut(s)	95
PspPI	GGNCC	1 cut(s)	153
PsuI	RGATCY	1 cut(s)	433
RruI	TCGCGA	1 cut(s)	608
RseI	CAYNNNNRTG	2 cut(s)	21, 782
SacI	GAGCTC	1 cut(s)	81
SaqAI	TTAA	2 cut(s)	62, 629
SatI	GCNGC	3 cut(s)	255, 370, 867
Sau3AI	GATC	3 cut(s)	433, 505, 944
Sau96I	GGNCC	1 cut(s)	153
ScrFI	CCNGG	2 cut(s)	97, 152
SduI	GDGCHC	2 cut(s)	81, 791
SfaNI	GCATC	3 cut(s)	3, 343, 727
SmiMI	CAYNNNNRTG	2 cut(s)	21, 782
Sse9I	AATT	6 cut(s)	51, 159, 455, 475, 656, 825
SsiI	CCGC	2 cut(s)	126, 624
SspMI	CTAG	1 cut(s)	942
SstI	GAGCTC	1 cut(s)	81
StyD4I	CCNGG	2 cut(s)	95, 150
StyI	CCWWGG	1 cut(s)	933
TaaI	ACNGT	3 cut(s)	565, 838, 1024
TaiI	ACGT	1 cut(s)	858
TaqI	TCGA	5 cut(s)	548, 687, 816, 918, 957
TasI	AATT	6 cut(s)	51, 159, 455, 475, 656, 825
TfiI	GAWTC	5 cut(s)	514, 595, 908, 920, 979
Tru1I	TTAA	2 cut(s)	62, 629
Tru9I	TTAA	2 cut(s)	62, 629
TscAI	CASTG	3 cut(s)	217, 843, 1027
TseI	GCWGC	3 cut(s)	254, 369, 866
TspDTI	ATGAA	5 cut(s)	231, 249, 429, 837, 1004
TspGWI	ACGGA	2 cut(s)	42, 810
TspRI	CASTG	3 cut(s)	217, 843, 1027
XapI	RAATTY	3 cut(s)	51, 475, 656
XceI	RCATGY	2 cut(s)	37, 536
XspI	CTAG	1 cut(s)	942

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.