Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0008067

Physical Location & Seq

Genomic Coordinates Reverse (-)

3944998 .. 3945691

Gene Structure 694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGTACTCACAATCGTCTCTTCCACTGGCCCATGGCGCCGTCGCATCGTCGTCCACCTTCTCGTTCTCGTCGGAGCCAGAGCCGGGAGGTGTAGAAGAAGCTCTGCTACAGCTCGTCCAGGATCACCACCACGCCTCCCTTAGACTTCGCGACGTCACCGAGAAGGCGAAGAAGGACGCTATCAAGAAGGCGGCGCGTGTGGCGGAGCTGATGGTGGATGCGGTGAACGGCGGCGTGCAAGAGGCGTTCGTGAACGAAAAGCGAATCGAGTATGAAATTAGAGCTTTGGCTGCCACCATTGCACGATTCAGCAAACAAACTGATCACTGGCTCTCTGTCACTCGTTCTATGAACACTGCCATCAAGGAAATTGGAGATTTTGAGAACTGGATGAAGACTATGGAATTTGATTGTAAGAGCATCACTGCAGCTATCCACAATATTCACCAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005829 GO:0006810 GO:0007034 GO:0007275 GO:0008150 GO:0012505 GO:0016192 GO:0016197 GO:0022622 GO:0031082 GO:0031083 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045324 GO:0046907 GO:0048364 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0097708 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCN5L1

Protein Analysis

152

Amino Acids

16.74

Weight (kDa)

6.15

Isoelectric Point (pI)

53.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCN5L1	PF06320	38 - 150	2.6e-41	GCN5-like protein 1 (GCN5L1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30330 AT2G30330
fragaria_vesca	FvH4_3g40170 FvH4_3g40170 FvH4_3g40170
malus_domestica	MD03G1059100.v1.1 MD11G1061300.v1.1
prunus_persica	Prupe.6G044100_v2.0.a1 Prupe.6G044100_v2.0.a1 Prupe.6G044100_v2.0.a1 Prupe.6G095400_v2.0.a1
pyrus_communis	pycom03g04750 pycom11g05090
rosa_chinensis	RchiOBHm_Chr5g0072361
rosa_laevigata	RLG00000036294
rosa_multiflora	Rmu_co8455359.1_g000001 Rmu_sc0000737.1_g000015
rosa_roxburghii	Rroxscaffold_1G00008860
rosa_rugosa	Rorug05G0417500
rosa_samantha	Rh5AG474100 Rh5BG494200 Rh5CG518200 Rh5DG506300
rosa_wichuraiana	Rw5G044020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	156
AccB1I	GGYRCC	1 cut(s)	35
AccII	CGCG	2 cut(s)	150, 196
AciI	CCGC	4 cut(s)	191, 203, 221, 231
AclWI	GGATC	1 cut(s)	129
AcsI	RAATTY	1 cut(s)	404
AcyI	GRCGYC	2 cut(s)	36, 153
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	83
AjnI	CCWGG	1 cut(s)	117
AluBI	AGCT	5 cut(s)	101, 112, 208, 284, 431
AluI	AGCT	5 cut(s)	101, 112, 208, 284, 431
Alw26I	GTCTC	1 cut(s)	21
AlwI	GGATC	1 cut(s)	129
AoxI	GGCC	1 cut(s)	27
ApeKI	GCWGC	2 cut(s)	290, 428
ApoI	RAATTY	1 cut(s)	404
AspLEI	GCGC	2 cut(s)	38, 196
AspS9I	GGNCC	1 cut(s)	28
AsuC2I	CCSGG	1 cut(s)	84
AsuHPI	GGTGA	4 cut(s)	116, 148, 235, 437
BanI	GGYRCC	1 cut(s)	35
BarI	GAAGNNNNNNTAC	2 cut(s)	90, 122
BbsI	GAAGAC	1 cut(s)	401
BbvI	GCAGC	2 cut(s)	277, 440
BccI	CCATC	2 cut(s)	205, 368
BceAI	ACGGC	2 cut(s)	23, 244
BciT130I	CCWGG	1 cut(s)	119
BclI	TGATCA	1 cut(s)	322
BcnI	CCSGG	1 cut(s)	84
BcoDI	GTCTC	1 cut(s)	21
BfmI	CTRYAG	2 cut(s)	107, 426
BfoI	RGCGCY	1 cut(s)	39
BisI	GCNGC	4 cut(s)	192, 232, 291, 429
BlsI	GCNGC	4 cut(s)	193, 233, 292, 430
Bme1390I	CCNGG	2 cut(s)	84, 119
BmgT120I	GGNCC	1 cut(s)	28
BmiI	GGNNCC	2 cut(s)	37, 75
BmrFI	CCNGG	2 cut(s)	84, 119
BmsI	GCATC	3 cut(s)	53, 208, 429
BpiI	GAAGAC	1 cut(s)	401
BpuMI	CCSGG	1 cut(s)	84
BsaHI	GRCGYC	2 cut(s)	36, 153
BsaJI	CCNNGG	1 cut(s)	31
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse1I	ACTGG	3 cut(s)	30, 332, 392
Bse3DI	GCAATG	1 cut(s)	297
BseBI	CCWGG	1 cut(s)	119
BseDI	CCNNGG	1 cut(s)	31
BseGI	GGATG	2 cut(s)	223, 396
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMI	GCAATG	1 cut(s)	297
BseNI	ACTGG	3 cut(s)	30, 332, 392
BseXI	GCAGC	2 cut(s)	277, 440
Bsh1236I	CGCG	2 cut(s)	150, 196
BshFI	GGCC	1 cut(s)	29
BshNI	GGYRCC	1 cut(s)	35
BsiSI	CCGG	1 cut(s)	83
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmAI	GTCTC	1 cut(s)	21
BsmBI	CGTCTC	1 cut(s)	21
BsnI	GGCC	1 cut(s)	29
Bsp143I	GATC	2 cut(s)	121, 322
Bsp19I	CCATGG	1 cut(s)	31
Bsp68I	TCGCGA	1 cut(s)	150
BspACI	CCGC	4 cut(s)	191, 203, 221, 231
BspANI	GGCC	1 cut(s)	29
BspFNI	CGCG	2 cut(s)	150, 196
BspLI	GGNNCC	2 cut(s)	37, 75
BspMAI	CTGCAG	1 cut(s)	430
BspPI	GGATC	1 cut(s)	129
BspT107I	GGYRCC	1 cut(s)	35
BsrDI	GCAATG	1 cut(s)	297
BsrI	ACTGG	3 cut(s)	30, 332, 392
BssECI	CCNNGG	1 cut(s)	31
BssMI	GATC	2 cut(s)	121, 322
BssNI	GRCGYC	2 cut(s)	36, 153
BssT1I	CCWWGG	1 cut(s)	31
Bst2UI	CCWGG	1 cut(s)	119
Bst6I	CTCTTC	1 cut(s)	24
BstACI	GRCGYC	2 cut(s)	36, 153
BstC8I	GCNNGC	1 cut(s)	236
BstDEI	CTNAG	1 cut(s)	140
BstDSI	CCRYGG	1 cut(s)	31
BstF5I	GGATG	2 cut(s)	223, 396
BstFNI	CGCG	2 cut(s)	150, 196
BstH2I	RGCGCY	1 cut(s)	39
BstHHI	GCGC	2 cut(s)	38, 196
BstKTI	GATC	2 cut(s)	124, 325
BstMAI	GTCTC	1 cut(s)	21
BstMBI	GATC	2 cut(s)	121, 322
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 200, 290, 299
BstNI	CCWGG	1 cut(s)	119
BstSCI	CCNGG	2 cut(s)	82, 117
BstSFI	CTRYAG	2 cut(s)	107, 426
BstUI	CGCG	2 cut(s)	150, 196
BstV1I	GCAGC	2 cut(s)	277, 440
BstV2I	GAAGAC	1 cut(s)	401
BsuRI	GGCC	1 cut(s)	29
BtgI	CCRYGG	1 cut(s)	31
BtsCI	GGATG	2 cut(s)	223, 396
BtsI	GCAGTG	2 cut(s)	354, 423
BtsIMutI	CAGTG	4 cut(s)	23, 325, 354, 423
BtuMI	TCGCGA	1 cut(s)	150
Cac8I	GCNNGC	1 cut(s)	236
CfoI	GCGC	2 cut(s)	38, 196
Cfr13I	GGNCC	1 cut(s)	28
CseI	GACGC	1 cut(s)	185
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	2 cut(s)	32, 453
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	140
DinI	GGCGCC	1 cut(s)	37
DpnI	GATC	2 cut(s)	123, 324
DpnII	GATC	2 cut(s)	121, 322
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
EciI	GGCGGA	1 cut(s)	218
Eco130I	CCWWGG	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	117
EcoT14I	CCWWGG	1 cut(s)	31
EgeI	GGCGCC	1 cut(s)	37
EheI	GGCGCC	1 cut(s)	37
ErhI	CCWWGG	1 cut(s)	31
Esp3I	CGTCTC	1 cut(s)	21
FaeI	CATG	2 cut(s)	35, 456
FaiI	YATR	5 cut(s)	33, 273, 350, 401, 454
FatI	CATG	2 cut(s)	31, 452
FbaI	TGATCA	1 cut(s)	322
Fnu4HI	GCNGC	4 cut(s)	192, 232, 291, 429
FokI	GGATG	2 cut(s)	230, 403
Fsp4HI	GCNGC	4 cut(s)	192, 232, 291, 429
GlaI	GCGC	2 cut(s)	37, 195
GluI	GCNGC	4 cut(s)	192, 232, 291, 429
HaeII	RGCGCY	1 cut(s)	39
HaeIII	GGCC	1 cut(s)	29
HapII	CCGG	1 cut(s)	83
HgaI	GACGC	1 cut(s)	185
HhaI	GCGC	2 cut(s)	38, 196
Hin1I	GRCGYC	2 cut(s)	36, 153
Hin1II	CATG	2 cut(s)	35, 456
Hin6I	GCGC	2 cut(s)	36, 194
HinP1I	GCGC	2 cut(s)	36, 194
HinfI	GANTC	2 cut(s)	264, 306
HpaII	CCGG	1 cut(s)	83
HphI	GGTGA	4 cut(s)	116, 148, 235, 437
Hpy166II	GTNNAC	3 cut(s)	54, 226, 253
Hpy188I	TCNGA	1 cut(s)	73
Hpy188III	TCNNGA	3 cut(s)	149, 184, 250
Hpy8I	GTNNAC	3 cut(s)	54, 226, 253
Hpy99I	CGWCG	4 cut(s)	44, 52, 73, 155
HpyAV	CCTTC	4 cut(s)	67, 157, 166, 181
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	3 cut(s)	238, 302, 428
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 200, 290, 299
HpyF3I	CTNAG	1 cut(s)	140
HpySE526I	ACGT	1 cut(s)	153
Hsp92I	GRCGYC	2 cut(s)	36, 153
Hsp92II	CATG	2 cut(s)	35, 456
HspAI	GCGC	2 cut(s)	36, 194
KasI	GGCGCC	1 cut(s)	35
Ksp22I	TGATCA	1 cut(s)	322
Kzo9I	GATC	2 cut(s)	121, 322
LmnI	GCTCC	2 cut(s)	73, 205
LpnPI	CCDG	7 cut(s)	11, 90, 96, 104, 131, 313, 373
Lsp1109I	GCAGC	2 cut(s)	277, 440
LweI	GCATC	3 cut(s)	53, 208, 429
MaeII	ACGT	1 cut(s)	153
MaeIII	GTNAC	2 cut(s)	154, 337
MalI	GATC	2 cut(s)	123, 324
MboI	GATC	2 cut(s)	121, 322
MboII	GAAGA	4 cut(s)	11, 107, 181, 406
MluCI	AATT	3 cut(s)	276, 369, 404
Mly113I	GGCGCC	1 cut(s)	36
MmeI	TCCRAC	1 cut(s)	51
MnlI	CCTC	3 cut(s)	80, 145, 235
MspI	CCGG	1 cut(s)	83
MspR9I	CCNGG	2 cut(s)	84, 119
MvaI	CCWGG	1 cut(s)	119
MvnI	CGCG	2 cut(s)	150, 196
MwoI	GCNNNNNNNGC	4 cut(s)	35, 200, 290, 299
NarI	GGCGCC	1 cut(s)	36
NciI	CCSGG	1 cut(s)	84
NcoI	CCATGG	1 cut(s)	31
NdeII	GATC	2 cut(s)	121, 322
NlaIII	CATG	2 cut(s)	35, 456
NlaIV	GGNNCC	2 cut(s)	37, 75
NmuCI	GTSAC	2 cut(s)	154, 337
NruI	TCGCGA	1 cut(s)	150
PfeI	GAWTC	2 cut(s)	264, 306
PfoI	TCCNGGA	1 cut(s)	117
PkrI	GCNGC	4 cut(s)	193, 233, 292, 430
PluTI	GGCGCC	1 cut(s)	39
Psp6I	CCWGG	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	117
PspN4I	GGNNCC	2 cut(s)	37, 75
PspPI	GGNCC	1 cut(s)	28
PstI	CTGCAG	1 cut(s)	430
RruI	TCGCGA	1 cut(s)	150
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SatI	GCNGC	4 cut(s)	192, 232, 291, 429
Sau3AI	GATC	2 cut(s)	121, 322
Sau96I	GGNCC	1 cut(s)	28
ScrFI	CCNGG	2 cut(s)	84, 119
SetI	ASST	8 cut(s)	59, 91, 103, 114, 156, 210, 286, 433
SfaNI	GCATC	3 cut(s)	53, 208, 429
SfcI	CTRYAG	2 cut(s)	107, 426
SfoI	GGCGCC	1 cut(s)	37
Sse9I	AATT	3 cut(s)	276, 369, 404
SsiI	CCGC	4 cut(s)	191, 203, 221, 231
SspDI	GGCGCC	1 cut(s)	35
SspI	AATATT	1 cut(s)	442
StyD4I	CCNGG	2 cut(s)	82, 117
StyI	CCWWGG	1 cut(s)	31
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	1 cut(s)	267
TasI	AATT	3 cut(s)	276, 369, 404
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	2 cut(s)	194, 234
TfiI	GAWTC	2 cut(s)	264, 306
TscAI	CASTG	4 cut(s)	30, 332, 361, 430
TseFI	GTSAC	2 cut(s)	154, 337
TseI	GCWGC	2 cut(s)	290, 428
Tsp45I	GTSAC	2 cut(s)	154, 337
TspDTI	ATGAA	3 cut(s)	288, 365, 407
TspRI	CASTG	4 cut(s)	30, 332, 361, 430
XapI	RAATTY	1 cut(s)	404
ZraI	GACGTC	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.