pycom11g06690

Protein PHLOEM PROTEIN 2-LIKE A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0011580
Physical Location & Seq
Forward (+)
5154993 .. 5155310
318 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g06690.1

Sequence Viewer

Length: 318 bp
ATGTCGGAGCTCTCATCAGGAGTTGTTTATGAGATTGCCTACATTGTTAAATTAACAAATGGAGCATCCGGATGGGAACTCCCTGTTACACTCAAAATCAATCTCCCAGGGCAGGGCGGAACAGAAAAGAAGCGCCGATATAGTCTCCTCGAGAAGCCGAGAGGACTGTGTATGGAGCTTAATGGTGGCAGCTTTCAGTCCATGGCAGGAGAAACTGGAGAAGTGATCTTTGATCTTTATATTCATGACAAGCCCTCCAAAAGTGGGCTTATCATTAAAGGTATCATTATCAGGCCGAAAGAATTGAACAGATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

106

Amino Acids

11.53

Weight (kDa)

9.1

Isoelectric Point (pI)

36.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 2 - 99 5.3e-11 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 68
AciI CCGC 1 cut(s) 117
AfiI CCNNNNNNNGG 3 cut(s) 112, 113, 264
AgsI TTSAA 1 cut(s) 307
AjnI CCWGG 1 cut(s) 106
AluBI AGCT 3 cut(s) 10, 178, 192
AluI AGCT 3 cut(s) 10, 178, 192
Alw21I GWGCWC 1 cut(s) 12
Alw26I GTCTC 1 cut(s) 149
Ama87I CYCGRG 1 cut(s) 149
Aor13HI TCCGGA 1 cut(s) 68
AoxI GGCC 1 cut(s) 293
ApeKI GCWGC 1 cut(s) 189
AspLEI GCGC 1 cut(s) 135
AvaI CYCGRG 1 cut(s) 149
BanII GRGCYC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 12
BbvI GCAGC 1 cut(s) 201
BccI CCATC 1 cut(s) 66
BciT130I CCWGG 1 cut(s) 108
BcoDI GTCTC 1 cut(s) 149
BfoI RGCGCY 1 cut(s) 136
BglII AGATCT 1 cut(s) 311
BisI GCNGC 1 cut(s) 190
BlsI GCNGC 1 cut(s) 191
Bme1390I CCNGG 1 cut(s) 108
BmeT110I CYCGRG 1 cut(s) 149
BmrFI CCNGG 1 cut(s) 108
BmsI GCATC 1 cut(s) 74
BpmI CTGGAG 1 cut(s) 237
BsaJI CCNNGG 3 cut(s) 106, 107, 201
BsaWI WCCGGW 1 cut(s) 68
BsaXI ACNNNNNCTCC 2 cut(s) 239, 269
Bsc4I CCNNNNNNNGG 3 cut(s) 112, 113, 264
Bse1I ACTGG 1 cut(s) 220
BseAI TCCGGA 1 cut(s) 68
BseBI CCWGG 1 cut(s) 108
BseDI CCNNGG 3 cut(s) 106, 107, 201
BseGI GGATG 2 cut(s) 65, 77
BseLI CCNNNNNNNGG 3 cut(s) 112, 113, 264
BseNI ACTGG 1 cut(s) 220
BseRI GAGGAG 1 cut(s) 137
BseXI GCAGC 1 cut(s) 201
BshFI GGCC 1 cut(s) 295
BsiHKAI GWGCWC 1 cut(s) 12
BsiHKCI CYCGRG 1 cut(s) 149
BsiSI CCGG 1 cut(s) 69
BslI CCNNNNNNNGG 3 cut(s) 112, 113, 264
BsmAI GTCTC 1 cut(s) 149
BsnI GGCC 1 cut(s) 295
BsoBI CYCGRG 1 cut(s) 149
Bsp1286I GDGCHC 1 cut(s) 12
Bsp13I TCCGGA 1 cut(s) 68
Bsp143I GATC 3 cut(s) 225, 232, 311
Bsp19I CCATGG 1 cut(s) 201
BspACI CCGC 1 cut(s) 117
BspANI GGCC 1 cut(s) 295
BspEI TCCGGA 1 cut(s) 68
BspHI TCATGA 1 cut(s) 244
BsrI ACTGG 1 cut(s) 220
BssECI CCNNGG 3 cut(s) 106, 107, 201
BssMI GATC 3 cut(s) 225, 232, 311
BssT1I CCWWGG 1 cut(s) 201
Bst2UI CCWGG 1 cut(s) 108
Bst4CI ACNGT 1 cut(s) 168
BstDSI CCRYGG 1 cut(s) 201
BstF5I GGATG 2 cut(s) 65, 77
BstH2I RGCGCY 1 cut(s) 136
BstHHI GCGC 1 cut(s) 135
BstKTI GATC 3 cut(s) 228, 235, 314
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 3 cut(s) 225, 232, 311
BstNI CCWGG 1 cut(s) 108
BstSCI CCNGG 1 cut(s) 106
BstV1I GCAGC 1 cut(s) 201
BstX2I RGATCY 1 cut(s) 311
BstYI RGATCY 1 cut(s) 311
BsuRI GGCC 1 cut(s) 295
BtgI CCRYGG 1 cut(s) 201
BtsCI GGATG 2 cut(s) 65, 77
CciI TCATGA 1 cut(s) 244
CfoI GCGC 1 cut(s) 135
CviAII CATG 2 cut(s) 202, 245
CviJI RGCY 7 cut(s) 10, 157, 178, 192, 253, 268, 295
CviKI_1 RGCY 7 cut(s) 10, 157, 178, 192, 253, 268, 295
DpnI GATC 3 cut(s) 227, 234, 313
DpnII GATC 3 cut(s) 225, 232, 311
EciI GGCGGA 1 cut(s) 132
Ecl136II GAGCTC 1 cut(s) 10
Eco130I CCWWGG 1 cut(s) 201
Eco24I GRGCYC 1 cut(s) 12
Eco53kI GAGCTC 1 cut(s) 10
Eco88I CYCGRG 1 cut(s) 149
EcoICRI GAGCTC 1 cut(s) 10
EcoRII CCWGG 1 cut(s) 106
EcoT14I CCWWGG 1 cut(s) 201
EcoT38I GRGCYC 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 201
FaeI CATG 2 cut(s) 205, 248
FaiI YATR 6 cut(s) 30, 141, 173, 203, 240, 246
FatI CATG 2 cut(s) 201, 244
Fnu4HI GCNGC 1 cut(s) 190
FokI GGATG 2 cut(s) 52, 84
FriOI GRGCYC 1 cut(s) 12
Fsp4HI GCNGC 1 cut(s) 190
GlaI GCGC 1 cut(s) 134
GluI GCNGC 1 cut(s) 190
GsuI CTGGAG 1 cut(s) 237
HaeII RGCGCY 1 cut(s) 136
HaeIII GGCC 1 cut(s) 295
HapII CCGG 1 cut(s) 69
HhaI GCGC 1 cut(s) 135
Hin1II CATG 2 cut(s) 205, 248
Hin6I GCGC 1 cut(s) 133
HinP1I GCGC 1 cut(s) 133
HpaII CCGG 1 cut(s) 69
Hpy188I TCNGA 1 cut(s) 7
Hpy188III TCNNGA 4 cut(s) 18, 69, 151, 245
HpyCH4III ACNGT 1 cut(s) 168
Hsp92II CATG 2 cut(s) 205, 248
HspAI GCGC 1 cut(s) 133
Kpn2I TCCGGA 1 cut(s) 68
Kzo9I GATC 3 cut(s) 225, 232, 311
LmnI GCTCC 3 cut(s) 7, 62, 175
LpnPI CCDG 9 cut(s) 3, 82, 93, 96, 98, 120, 192, 201, 277
Lsp1109I GCAGC 1 cut(s) 201
LweI GCATC 1 cut(s) 74
MaeIII GTNAC 1 cut(s) 85
MalI GATC 3 cut(s) 227, 234, 313
MboI GATC 3 cut(s) 225, 232, 311
MflI RGATCY 1 cut(s) 311
MhlI GDGCHC 1 cut(s) 12
MluCI AATT 2 cut(s) 50, 302
MnlI CCTC 3 cut(s) 155, 158, 265
MroI TCCGGA 1 cut(s) 68
MseI TTAA 5 cut(s) 48, 53, 180, 276, 316
MslI CAYNNNNRTG 1 cut(s) 70
MspI CCGG 1 cut(s) 69
MspR9I CCNGG 1 cut(s) 108
MvaI CCWGG 1 cut(s) 108
NcoI CCATGG 1 cut(s) 201
NdeII GATC 3 cut(s) 225, 232, 311
NlaIII CATG 2 cut(s) 205, 248
NmeAIII GCCGAG 1 cut(s) 183
PaeR7I CTCGAG 1 cut(s) 149
PagI TCATGA 1 cut(s) 244
PasI CCCWGGG 1 cut(s) 107
PkrI GCNGC 1 cut(s) 191
Psp124BI GAGCTC 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 106
PspGI CCWGG 1 cut(s) 106
PsuI RGATCY 1 cut(s) 311
RseI CAYNNNNRTG 1 cut(s) 70
SacI GAGCTC 1 cut(s) 12
SaqAI TTAA 5 cut(s) 48, 53, 180, 276, 316
SatI GCNGC 1 cut(s) 190
Sau3AI GATC 3 cut(s) 225, 232, 311
ScrFI CCNGG 1 cut(s) 108
SduI GDGCHC 1 cut(s) 12
SetI ASST 4 cut(s) 12, 180, 194, 283
SfaNI GCATC 1 cut(s) 74
Sfr274I CTCGAG 1 cut(s) 149
SlaI CTCGAG 1 cut(s) 149
SmiMI CAYNNNNRTG 1 cut(s) 70
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
Sse9I AATT 2 cut(s) 50, 302
SsiI CCGC 1 cut(s) 117
SstI GAGCTC 1 cut(s) 12
StyD4I CCNGG 1 cut(s) 106
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 1 cut(s) 168
TaqI TCGA 1 cut(s) 150
TasI AATT 2 cut(s) 50, 302
Tru1I TTAA 5 cut(s) 48, 53, 180, 276, 316
Tru9I TTAA 5 cut(s) 48, 53, 180, 276, 316
TseI GCWGC 1 cut(s) 189
TspDTI ATGAA 1 cut(s) 233
XhoI CTCGAG 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.