Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002986.1

Orthogroup ID

OG0011580

Physical Location & Seq

Genomic Coordinates Reverse (-)

177874 .. 180666

Gene Structure 2793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002986.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

atgttcgaaattttcaatcatccggcatgcctgcagaaaatatggaaggagaagaaaactggctacaaatgcatgatgttgttcccaacgagtctcagtgttgttaatggtggtcctccatattgggtttgggattgttatgaggaaacaagtgatgagaacactgtggtagccaaactaaatgatgtatgttggctggaggtaacaggacacttcaacatgtcagagctctcagcaggaattgattatgagattgcgtacagagtcaaattaacgactgcagcaactggatgggaattccctgttactctcaatgtcagactcccgaatgattcaaaagtccgaaagcgccaatacagtctattcgagaagcccagagaagagtggatagacctggtcggtggccattttaaggtcaagaaaggagaaactggagaagcgcactttgatcttgctggaagtggcggacattggaagagtgggcttatcatccaaggtatcattatcaagccgaaaacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2

Protein Analysis

173

Amino Acids

19.72

Weight (kDa)

6.96

Isoelectric Point (pI)

23.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011580)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30090
malus_domestica	MD17G1184600.v1.1
prunus_persica	Prupe.3G082500_v2.0.a1
pyrus_communis	pycom11g06690
rosa_chinensis	RchiOBHm_Chr2g0136161 RchiOBHm_Chr2g0136311
rosa_laevigata	RLG00000019515
rosa_multiflora	Rmu_sc0002070.1_g000021 Rmu_sc0002070.1_g000060 Rmu_sc0002986.1_g000039
rosa_roxburghii	Rroxscaffold_2G00108400 Rroxscaffold_2G00108430
rosa_rugosa	Rorug02G0328400 Rorug02G0328500 Rorug02G0329000
rosa_samantha	Rh2AG380500 Rh2BG386900 Rh2CG366000 Rh2DG403500
rosa_wichuraiana	Rw2G030990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	465
AcoI	YGGCCR	1 cut(s)	403
AcsI	RAATTY	2 cut(s)	9, 296
AfaI	GTAC	1 cut(s)	260
AfiI	CCNNNNNNNGG	1 cut(s)	412
AflIII	ACRYGT	1 cut(s)	219
AgsI	TTSAA	3 cut(s)	16, 217, 336
AjnI	CCWGG	1 cut(s)	393
AluBI	AGCT	1 cut(s)	229
AluI	AGCT	1 cut(s)	229
Alw21I	GWGCWC	1 cut(s)	231
Alw26I	GTCTC	1 cut(s)	98
AlwNI	CAGNNNCTG	1 cut(s)	287
AoxI	GGCC	1 cut(s)	403
ApeKI	GCWGC	1 cut(s)	281
ApoI	RAATTY	2 cut(s)	9, 296
AspLEI	GCGC	2 cut(s)	351, 442
AspS9I	GGNCC	1 cut(s)	113
AsuII	TTCGAA	1 cut(s)	6
AvaII	GGWCC	1 cut(s)	113
BalI	TGGCCA	1 cut(s)	405
BanII	GRGCYC	1 cut(s)	231
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	293
BccI	CCATC	1 cut(s)	285
BciT130I	CCWGG	1 cut(s)	395
BcoDI	GTCTC	1 cut(s)	98
BfmI	CTRYAG	2 cut(s)	32, 279
BfoI	RGCGCY	1 cut(s)	352
BisI	GCNGC	1 cut(s)	282
BlsI	GCNGC	1 cut(s)	283
Bme1390I	CCNGG	1 cut(s)	395
Bme18I	GGWCC	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	113
BmrFI	CCNGG	1 cut(s)	395
BpmI	CTGGAG	2 cut(s)	218, 453
Bpu14I	TTCGAA	1 cut(s)	6
BsaJI	CCNNGG	1 cut(s)	493
Bsc4I	CCNNNNNNNGG	1 cut(s)	412
Bse1I	ACTGG	3 cut(s)	64, 292, 436
BseBI	CCWGG	1 cut(s)	395
BseDI	CCNNGG	1 cut(s)	493
BseGI	GGATG	3 cut(s)	19, 296, 489
BseLI	CCNNNNNNNGG	1 cut(s)	412
BseMII	CTCAG	2 cut(s)	109, 246
BseNI	ACTGG	3 cut(s)	64, 292, 436
BseXI	GCAGC	1 cut(s)	293
BshFI	GGCC	1 cut(s)	405
BsiHKAI	GWGCWC	1 cut(s)	231
BsiSI	CCGG	1 cut(s)	23
BslI	CCNNNNNNNGG	1 cut(s)	412
BsmAI	GTCTC	1 cut(s)	98
BsnI	GGCC	1 cut(s)	405
Bsp119I	TTCGAA	1 cut(s)	6
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	1 cut(s)	448
BspACI	CCGC	1 cut(s)	465
BspANI	GGCC	1 cut(s)	405
BspCNI	CTCAG	2 cut(s)	108, 245
BspMAI	CTGCAG	2 cut(s)	36, 283
BspT104I	TTCGAA	1 cut(s)	6
BsrI	ACTGG	3 cut(s)	64, 292, 436
BssECI	CCNNGG	1 cut(s)	493
BssMI	GATC	1 cut(s)	448
BssT1I	CCWWGG	1 cut(s)	493
Bst2UI	CCWGG	1 cut(s)	395
Bst4CI	ACNGT	2 cut(s)	166, 359
Bst6I	CTCTTC	2 cut(s)	375, 470
BstBI	TTCGAA	1 cut(s)	6
BstC8I	GCNNGC	2 cut(s)	28, 32
BstDEI	CTNAG	2 cut(s)	95, 232
BstF5I	GGATG	3 cut(s)	19, 296, 489
BstH2I	RGCGCY	1 cut(s)	352
BstHHI	GCGC	2 cut(s)	351, 442
BstKTI	GATC	1 cut(s)	451
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	1 cut(s)	448
BstMWI	GCNNNNNNNGC	1 cut(s)	69
BstNI	CCWGG	1 cut(s)	395
BstNSI	RCATGY	2 cut(s)	30, 223
BstSCI	CCNGG	1 cut(s)	393
BstSFI	CTRYAG	2 cut(s)	32, 279
BstV1I	GCAGC	1 cut(s)	293
BsuRI	GGCC	1 cut(s)	405
BtsCI	GGATG	3 cut(s)	19, 296, 489
BtsIMutI	CAGTG	2 cut(s)	103, 162
Cac8I	GCNNGC	2 cut(s)	28, 32
CaiI	CAGNNNCTG	1 cut(s)	287
CfoI	GCGC	2 cut(s)	351, 442
Cfr13I	GGNCC	1 cut(s)	113
CsiI	ACCWGGT	1 cut(s)	393
Csp6I	GTAC	1 cut(s)	259
CviAII	CATG	3 cut(s)	27, 73, 220
CviJI	RGCY	8 cut(s)	63, 173, 196, 229, 373, 405, 484, 511
CviKI_1	RGCY	8 cut(s)	63, 173, 196, 229, 373, 405, 484, 511
CviQI	GTAC	1 cut(s)	259
DdeI	CTNAG	2 cut(s)	95, 232
DpnI	GATC	1 cut(s)	450
DpnII	GATC	1 cut(s)	448
EaeI	YGGCCR	1 cut(s)	403
Eam1104I	CTCTTC	2 cut(s)	375, 470
EarI	CTCTTC	2 cut(s)	375, 470
EciI	GGCGGA	1 cut(s)	480
Ecl136II	GAGCTC	1 cut(s)	229
Eco130I	CCWWGG	1 cut(s)	493
Eco24I	GRGCYC	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	113
Eco53kI	GAGCTC	1 cut(s)	229
EcoICRI	GAGCTC	1 cut(s)	229
EcoRI	GAATTC	1 cut(s)	296
EcoRII	CCWGG	1 cut(s)	393
EcoT14I	CCWWGG	1 cut(s)	493
EcoT22I	ATGCAT	1 cut(s)	74
EcoT38I	GRGCYC	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	493
FaeI	CATG	3 cut(s)	30, 76, 223
FaiI	YATR	8 cut(s)	28, 43, 74, 121, 141, 190, 221, 249
FatI	CATG	3 cut(s)	26, 72, 219
Fnu4HI	GCNGC	1 cut(s)	282
FokI	GGATG	3 cut(s)	6, 303, 476
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	1 cut(s)	282
GlaI	GCGC	2 cut(s)	350, 441
GluI	GCNGC	1 cut(s)	282
GsuI	CTGGAG	2 cut(s)	218, 453
HaeII	RGCGCY	1 cut(s)	352
HaeIII	GGCC	1 cut(s)	405
HapII	CCGG	1 cut(s)	23
HhaI	GCGC	2 cut(s)	351, 442
Hin1II	CATG	3 cut(s)	30, 76, 223
Hin6I	GCGC	2 cut(s)	349, 440
HinP1I	GCGC	2 cut(s)	349, 440
HinfI	GANTC	4 cut(s)	91, 264, 321, 332
HpaII	CCGG	1 cut(s)	23
Hpy188I	TCNGA	3 cut(s)	226, 320, 344
Hpy188III	TCNNGA	3 cut(s)	325, 367, 418
HpyAV	CCTTC	1 cut(s)	40
HpyCH4III	ACNGT	2 cut(s)	166, 359
HpyCH4V	TGCA	3 cut(s)	34, 72, 281
HpyF10VI	GCNNNNNNNGC	1 cut(s)	69
HpyF3I	CTNAG	2 cut(s)	95, 232
Hsp92II	CATG	3 cut(s)	30, 76, 223
HspAI	GCGC	2 cut(s)	349, 440
Kzo9I	GATC	1 cut(s)	448
Lsp1109I	GCAGC	1 cut(s)	293
MabI	ACCWGGT	1 cut(s)	393
MaeIII	GTNAC	2 cut(s)	202, 304
MalI	GATC	1 cut(s)	450
MboI	GATC	1 cut(s)	448
MboII	GAAGA	3 cut(s)	64, 392, 487
MhlI	GDGCHC	1 cut(s)	231
MlsI	TGGCCA	1 cut(s)	405
MluCI	AATT	4 cut(s)	9, 240, 269, 296
MluNI	TGGCCA	1 cut(s)	405
MlyI	GAGTC	3 cut(s)	100, 273, 315
MnlI	CCTC	3 cut(s)	126, 136, 193
Mox20I	TGGCCA	1 cut(s)	405
Mph1103I	ATGCAT	1 cut(s)	74
MscI	TGGCCA	1 cut(s)	405
MseI	TTAA	4 cut(s)	105, 272, 411, 520
Msp20I	TGGCCA	1 cut(s)	405
MspI	CCGG	1 cut(s)	23
MspR9I	CCNGG	1 cut(s)	395
MvaI	CCWGG	1 cut(s)	395
MwoI	GCNNNNNNNGC	1 cut(s)	69
NdeII	GATC	1 cut(s)	448
NlaIII	CATG	3 cut(s)	30, 76, 223
NsiI	ATGCAT	1 cut(s)	74
NspI	RCATGY	2 cut(s)	30, 223
NspV	TTCGAA	1 cut(s)	6
PaeI	GCATGC	1 cut(s)	30
PciI	ACATGT	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	332
PflFI	GACNNNGTC	1 cut(s)	395
PkrI	GCNGC	1 cut(s)	283
PleI	GAGTC	3 cut(s)	99, 272, 315
PpsI	GAGTC	3 cut(s)	99, 272, 315
PscI	ACATGT	1 cut(s)	219
Psp124BI	GAGCTC	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	393
PspGI	CCWGG	1 cut(s)	393
PspPI	GGNCC	1 cut(s)	113
PstI	CTGCAG	2 cut(s)	36, 283
PstNI	CAGNNNCTG	1 cut(s)	287
PsyI	GACNNNGTC	1 cut(s)	395
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
SacI	GAGCTC	1 cut(s)	231
SaqAI	TTAA	4 cut(s)	105, 272, 411, 520
SatI	GCNGC	1 cut(s)	282
Sau3AI	GATC	1 cut(s)	448
Sau96I	GGNCC	1 cut(s)	113
SchI	GAGTC	3 cut(s)	100, 273, 315
ScrFI	CCNGG	1 cut(s)	395
SduI	GDGCHC	1 cut(s)	231
SetI	ASST	5 cut(s)	204, 231, 396, 417, 499
SexAI	ACCWGGT	1 cut(s)	393
SfcI	CTRYAG	2 cut(s)	32, 279
SfuI	TTCGAA	1 cut(s)	6
SinI	GGWCC	1 cut(s)	113
SphI	GCATGC	1 cut(s)	30
Sse9I	AATT	4 cut(s)	9, 240, 269, 296
SsiI	CCGC	1 cut(s)	465
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	393
StyI	CCWWGG	1 cut(s)	493
TaaI	ACNGT	2 cut(s)	166, 359
TaqI	TCGA	2 cut(s)	6, 366
TasI	AATT	4 cut(s)	9, 240, 269, 296
TfiI	GAWTC	1 cut(s)	332
Tru1I	TTAA	4 cut(s)	105, 272, 411, 520
Tru9I	TTAA	4 cut(s)	105, 272, 411, 520
TscAI	CASTG	2 cut(s)	103, 169
TseI	GCWGC	1 cut(s)	281
TspRI	CASTG	2 cut(s)	103, 169
Tth111I	GACNNNGTC	1 cut(s)	395
VpaK11BI	GGWCC	1 cut(s)	113
XapI	RAATTY	2 cut(s)	9, 296
XceI	RCATGY	2 cut(s)	30, 223
XcmI	CCANNNNNNNNNTGG	1 cut(s)	126
Zsp2I	ATGCAT	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.