Rh2CG366000

Protein PHLOEM PROTEIN 2-LIKE A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0011580
Physical Location & Seq
Reverse (-)
49681055 .. 49696984
15930 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG366000.1

Sequence Viewer

Length: 576 bp
ATGTCCTTGTTTTGTCTACTAATATGTCATATTATTTTTCTTCAAACTTATCCTATGTTCGAAATTTTCAATCATCCTGCATGCCTGCAGAAAATATGGAAGGAGAAGAAAACTGGCTACAAATGCATGATGTTGTTCCCAACGAGTTTGAGTGTTGTTAATGGTGGTCCTCCATATTGGGTTTGGGATTGTTATGAGGAAACAAGTGATGAGAACACTGTGGTAGCCAAACTAAATGATGTATGTTGGCTGGAGGTAACAGGACACTTCAACATGTCAGAGCTCTCAGCAGGAATTGATTATGAGATTGCGTACAGAGTCAAATTAACGACTGCAGCAACTGGATGGGAATTCCCTGTTACTCTCAATGTCAGACTCCCGAATGATTCAAAAGTCCGAAAGCGCCAATACAGTCTATTCGAGAAGCCCAGAGAAGAGTGGATAGACCTGGTCGGTGGCCATTTTAAGGTCAAGAAAGGAGAAACTGGAGAAGCGCACTTTGATCTTGGTGGAAGTGGCGGACATTGGAAGAGTGGGCTTATCATCCAAGGTATCATTATCAAGCCGAAAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

191

Amino Acids

21.84

Weight (kDa)

6.99

Isoelectric Point (pI)

32.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 41 - 189 5e-29 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 16
AciI CCGC 1 cut(s) 519
AcoI YGGCCR 1 cut(s) 457
AcsI RAATTY 2 cut(s) 63, 350
AfaI GTAC 1 cut(s) 314
AfiI CCNNNNNNNGG 1 cut(s) 466
AflIII ACRYGT 1 cut(s) 273
AgsI TTSAA 4 cut(s) 44, 70, 271, 390
AjnI CCWGG 1 cut(s) 447
AluBI AGCT 1 cut(s) 283
AluI AGCT 1 cut(s) 283
Alw21I GWGCWC 1 cut(s) 285
AlwNI CAGNNNCTG 1 cut(s) 341
AoxI GGCC 1 cut(s) 457
ApeKI GCWGC 1 cut(s) 335
ApoI RAATTY 2 cut(s) 63, 350
AspLEI GCGC 2 cut(s) 405, 496
AspS9I GGNCC 1 cut(s) 167
AsuII TTCGAA 1 cut(s) 60
AvaII GGWCC 1 cut(s) 167
BalI TGGCCA 1 cut(s) 459
BanII GRGCYC 1 cut(s) 285
Bbv12I GWGCWC 1 cut(s) 285
BbvI GCAGC 1 cut(s) 347
BccI CCATC 1 cut(s) 339
BciT130I CCWGG 1 cut(s) 449
BfmI CTRYAG 2 cut(s) 86, 333
BfoI RGCGCY 1 cut(s) 406
BisI GCNGC 1 cut(s) 336
BlsI GCNGC 1 cut(s) 337
Bme1390I CCNGG 1 cut(s) 449
Bme18I GGWCC 1 cut(s) 167
BmgT120I GGNCC 1 cut(s) 167
BmrFI CCNGG 1 cut(s) 449
BpmI CTGGAG 2 cut(s) 272, 507
Bpu14I TTCGAA 1 cut(s) 60
BsaJI CCNNGG 1 cut(s) 547
Bsc4I CCNNNNNNNGG 1 cut(s) 466
Bse1I ACTGG 3 cut(s) 118, 346, 490
BseBI CCWGG 1 cut(s) 449
BseDI CCNNGG 1 cut(s) 547
BseGI GGATG 3 cut(s) 73, 350, 543
BseLI CCNNNNNNNGG 1 cut(s) 466
BseMII CTCAG 1 cut(s) 300
BseNI ACTGG 3 cut(s) 118, 346, 490
BseXI GCAGC 1 cut(s) 347
BshFI GGCC 1 cut(s) 459
BsiHKAI GWGCWC 1 cut(s) 285
BslI CCNNNNNNNGG 1 cut(s) 466
BsnI GGCC 1 cut(s) 459
Bsp119I TTCGAA 1 cut(s) 60
Bsp1286I GDGCHC 1 cut(s) 285
Bsp143I GATC 1 cut(s) 502
BspACI CCGC 1 cut(s) 519
BspANI GGCC 1 cut(s) 459
BspCNI CTCAG 1 cut(s) 299
BspMAI CTGCAG 2 cut(s) 90, 337
BspT104I TTCGAA 1 cut(s) 60
BsrI ACTGG 3 cut(s) 118, 346, 490
BssECI CCNNGG 1 cut(s) 547
BssMI GATC 1 cut(s) 502
BssT1I CCWWGG 1 cut(s) 547
Bst2UI CCWGG 1 cut(s) 449
Bst4CI ACNGT 2 cut(s) 220, 413
Bst6I CTCTTC 2 cut(s) 429, 524
BstBI TTCGAA 1 cut(s) 60
BstC8I GCNNGC 2 cut(s) 82, 86
BstDEI CTNAG 1 cut(s) 286
BstF5I GGATG 3 cut(s) 73, 350, 543
BstH2I RGCGCY 1 cut(s) 406
BstHHI GCGC 2 cut(s) 405, 496
BstKTI GATC 1 cut(s) 505
BstMBI GATC 1 cut(s) 502
BstMWI GCNNNNNNNGC 1 cut(s) 123
BstNI CCWGG 1 cut(s) 449
BstNSI RCATGY 2 cut(s) 84, 277
BstSCI CCNGG 1 cut(s) 447
BstSFI CTRYAG 2 cut(s) 86, 333
BstV1I GCAGC 1 cut(s) 347
BsuRI GGCC 1 cut(s) 459
BtsCI GGATG 3 cut(s) 73, 350, 543
BtsIMutI CAGTG 1 cut(s) 216
Cac8I GCNNGC 2 cut(s) 82, 86
CaiI CAGNNNCTG 1 cut(s) 341
CfoI GCGC 2 cut(s) 405, 496
Cfr13I GGNCC 1 cut(s) 167
CsiI ACCWGGT 1 cut(s) 447
Csp6I GTAC 1 cut(s) 313
CviAII CATG 3 cut(s) 81, 127, 274
CviJI RGCY 8 cut(s) 117, 227, 250, 283, 427, 459, 538, 565
CviKI_1 RGCY 8 cut(s) 117, 227, 250, 283, 427, 459, 538, 565
CviQI GTAC 1 cut(s) 313
DdeI CTNAG 1 cut(s) 286
DpnI GATC 1 cut(s) 504
DpnII GATC 1 cut(s) 502
EaeI YGGCCR 1 cut(s) 457
Eam1104I CTCTTC 2 cut(s) 429, 524
EarI CTCTTC 2 cut(s) 429, 524
EciI GGCGGA 1 cut(s) 534
Ecl136II GAGCTC 1 cut(s) 283
Eco130I CCWWGG 1 cut(s) 547
Eco24I GRGCYC 1 cut(s) 285
Eco47I GGWCC 1 cut(s) 167
Eco53kI GAGCTC 1 cut(s) 283
EcoICRI GAGCTC 1 cut(s) 283
EcoRI GAATTC 1 cut(s) 350
EcoRII CCWGG 1 cut(s) 447
EcoT14I CCWWGG 1 cut(s) 547
EcoT22I ATGCAT 1 cut(s) 128
EcoT38I GRGCYC 1 cut(s) 285
ErhI CCWWGG 1 cut(s) 547
FaeI CATG 3 cut(s) 84, 130, 277
FatI CATG 3 cut(s) 80, 126, 273
FblI GTMKAC 1 cut(s) 16
Fnu4HI GCNGC 1 cut(s) 336
FokI GGATG 3 cut(s) 60, 357, 530
FriOI GRGCYC 1 cut(s) 285
Fsp4HI GCNGC 1 cut(s) 336
GlaI GCGC 2 cut(s) 404, 495
GluI GCNGC 1 cut(s) 336
GsuI CTGGAG 2 cut(s) 272, 507
HaeII RGCGCY 1 cut(s) 406
HaeIII GGCC 1 cut(s) 459
HhaI GCGC 2 cut(s) 405, 496
Hin1II CATG 3 cut(s) 84, 130, 277
Hin6I GCGC 2 cut(s) 403, 494
HinP1I GCGC 2 cut(s) 403, 494
HinfI GANTC 3 cut(s) 318, 375, 386
Hpy166II GTNNAC 1 cut(s) 17
Hpy188I TCNGA 3 cut(s) 280, 374, 398
Hpy188III TCNNGA 3 cut(s) 379, 421, 472
Hpy8I GTNNAC 1 cut(s) 17
HpyAV CCTTC 1 cut(s) 94
HpyCH4III ACNGT 2 cut(s) 220, 413
HpyCH4V TGCA 4 cut(s) 80, 88, 126, 335
HpyF10VI GCNNNNNNNGC 1 cut(s) 123
HpyF3I CTNAG 1 cut(s) 286
Hsp92II CATG 3 cut(s) 84, 130, 277
HspAI GCGC 2 cut(s) 403, 494
Kzo9I GATC 1 cut(s) 502
Lsp1109I GCAGC 1 cut(s) 347
MabI ACCWGGT 1 cut(s) 447
MaeIII GTNAC 2 cut(s) 256, 358
MalI GATC 1 cut(s) 504
MboI GATC 1 cut(s) 502
MboII GAAGA 4 cut(s) 32, 118, 446, 541
MhlI GDGCHC 1 cut(s) 285
MlsI TGGCCA 1 cut(s) 459
MluCI AATT 4 cut(s) 63, 294, 323, 350
MluNI TGGCCA 1 cut(s) 459
MlyI GAGTC 2 cut(s) 327, 369
MnlI CCTC 3 cut(s) 180, 190, 247
Mox20I TGGCCA 1 cut(s) 459
Mph1103I ATGCAT 1 cut(s) 128
MscI TGGCCA 1 cut(s) 459
MseI TTAA 4 cut(s) 159, 326, 465, 574
Msp20I TGGCCA 1 cut(s) 459
MspR9I CCNGG 1 cut(s) 449
MvaI CCWGG 1 cut(s) 449
MwoI GCNNNNNNNGC 1 cut(s) 123
NdeII GATC 1 cut(s) 502
NlaIII CATG 3 cut(s) 84, 130, 277
NsiI ATGCAT 1 cut(s) 128
NspI RCATGY 2 cut(s) 84, 277
NspV TTCGAA 1 cut(s) 60
PaeI GCATGC 1 cut(s) 84
PciI ACATGT 1 cut(s) 273
PfeI GAWTC 1 cut(s) 386
PflFI GACNNNGTC 1 cut(s) 449
PkrI GCNGC 1 cut(s) 337
PleI GAGTC 2 cut(s) 326, 369
PpsI GAGTC 2 cut(s) 326, 369
PscI ACATGT 1 cut(s) 273
Psp124BI GAGCTC 1 cut(s) 285
Psp6I CCWGG 1 cut(s) 447
PspGI CCWGG 1 cut(s) 447
PspPI GGNCC 1 cut(s) 167
PstI CTGCAG 2 cut(s) 90, 337
PstNI CAGNNNCTG 1 cut(s) 341
PsyI GACNNNGTC 1 cut(s) 449
RsaI GTAC 1 cut(s) 314
RsaNI GTAC 1 cut(s) 313
SacI GAGCTC 1 cut(s) 285
SaqAI TTAA 4 cut(s) 159, 326, 465, 574
SatI GCNGC 1 cut(s) 336
Sau3AI GATC 1 cut(s) 502
Sau96I GGNCC 1 cut(s) 167
SchI GAGTC 2 cut(s) 327, 369
ScrFI CCNGG 1 cut(s) 449
SduI GDGCHC 1 cut(s) 285
SetI ASST 5 cut(s) 258, 285, 450, 471, 553
SexAI ACCWGGT 1 cut(s) 447
SfcI CTRYAG 2 cut(s) 86, 333
SfuI TTCGAA 1 cut(s) 60
SinI GGWCC 1 cut(s) 167
SphI GCATGC 1 cut(s) 84
Sse9I AATT 4 cut(s) 63, 294, 323, 350
SsiI CCGC 1 cut(s) 519
SstI GAGCTC 1 cut(s) 285
StyD4I CCNGG 1 cut(s) 447
StyI CCWWGG 1 cut(s) 547
TaaI ACNGT 2 cut(s) 220, 413
TaqI TCGA 2 cut(s) 60, 420
TasI AATT 4 cut(s) 63, 294, 323, 350
TfiI GAWTC 1 cut(s) 386
Tru1I TTAA 4 cut(s) 159, 326, 465, 574
Tru9I TTAA 4 cut(s) 159, 326, 465, 574
TscAI CASTG 1 cut(s) 223
TseI GCWGC 1 cut(s) 335
TspRI CASTG 1 cut(s) 223
Tth111I GACNNNGTC 1 cut(s) 449
VpaK11BI GGWCC 1 cut(s) 167
XapI RAATTY 2 cut(s) 63, 350
XceI RCATGY 2 cut(s) 84, 277
XcmI CCANNNNNNNNNTGG 1 cut(s) 180
XmiI GTMKAC 1 cut(s) 16
Zsp2I ATGCAT 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.