RLG00000019515

Protein PHLOEM PROTEIN 2-LIKE A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0011580
Physical Location & Seq
Reverse (-)
53024961 .. 53025705
745 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019515

Sequence Viewer

Length: 534 bp
ATGAAGGAGGCAAATTCAGCAAAAGTCGAATTCGTAGACTACAAAACAAAGAAACTATGGATTGAAAAGAAGTCCAGCTACAAATGCGTAATGTTATGTCCAAGGCGGTTACATATCGCTCATGGTCCTCCATACTGGACCTGGAATTGTTATAAAGAGACGTGTAAAATTGACAATGTGGAGGTGGCGAAACTATCGCGTGTATGCTGGCTAAATCTGAGAGGACACATAAAGACGTGTGAGCTCTCATCCGGCGTAAGGTATGAGATTGCATACATAGTCAAACTAACAAATGGAGCATCTGGATGGGAACTCCCTATCACACTCAAACTAAGGCACCCGGATGGCAGAGAACAAACTCGCCGACAAAGTATACTCGAGAAGCCGAGAGGAGAGTGGATGGAGCTCAGTGGTGGTACCTTTTGGACCAACCAAGAAGAAACTGGAGAATTCTGGTTTGATCTTTATGAACATGGTGGACACTGGAAAACTGGGCTCATCGTTAAGGGTATTATTGCCAAGCCGAAACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

178

Amino Acids

20.7

Weight (kDa)

9.27

Isoelectric Point (pI)

28.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 28 - 175 5.1e-30 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 153
Acc65I GGTACC 1 cut(s) 416
AccB1I GGYRCC 2 cut(s) 336, 416
AccI GTMKAC 2 cut(s) 36, 373
AccII CGCG 1 cut(s) 199
AciI CCGC 1 cut(s) 106
AcsI RAATTY 3 cut(s) 13, 29, 449
AfaI GTAC 1 cut(s) 418
AfiI CCNNNNNNNGG 1 cut(s) 258
AflIII ACRYGT 2 cut(s) 161, 236
AgsI TTSAA 1 cut(s) 65
AjiI CACGTC 2 cut(s) 162, 237
AjnI CCWGG 1 cut(s) 140
AluBI AGCT 3 cut(s) 78, 244, 406
AluI AGCT 3 cut(s) 78, 244, 406
Alw21I GWGCWC 2 cut(s) 246, 408
Alw26I GTCTC 1 cut(s) 152
Ama87I CYCGRG 1 cut(s) 377
ApoI RAATTY 3 cut(s) 13, 29, 449
Asp718I GGTACC 1 cut(s) 416
AspS9I GGNCC 3 cut(s) 125, 138, 426
AsuC2I CCSGG 1 cut(s) 341
AvaI CYCGRG 1 cut(s) 377
AvaII GGWCC 3 cut(s) 125, 138, 426
BanI GGYRCC 2 cut(s) 336, 416
BanII GRGCYC 3 cut(s) 246, 408, 498
BarI GAAGNNNNNNTAC 2 cut(s) 62, 94
Bbv12I GWGCWC 2 cut(s) 246, 408
BccI CCATC 3 cut(s) 300, 338, 394
BciT130I CCWGG 1 cut(s) 142
BcnI CCSGG 1 cut(s) 341
BcoDI GTCTC 1 cut(s) 152
Bme1390I CCNGG 2 cut(s) 142, 341
Bme18I GGWCC 3 cut(s) 125, 138, 426
BmeT110I CYCGRG 1 cut(s) 377
BmgBI CACGTC 2 cut(s) 162, 237
BmgT120I GGNCC 3 cut(s) 125, 138, 426
BmiI GGNNCC 2 cut(s) 338, 418
BmrFI CCNGG 2 cut(s) 142, 341
BmrI ACTGGG 1 cut(s) 501
BmsI GCATC 1 cut(s) 308
BmuI ACTGGG 1 cut(s) 501
BpmI CTGGAG 1 cut(s) 465
BpuMI CCSGG 1 cut(s) 341
BsaJI CCNNGG 1 cut(s) 101
Bsc4I CCNNNNNNNGG 1 cut(s) 258
Bse1I ACTGG 4 cut(s) 140, 448, 488, 496
BseBI CCWGG 1 cut(s) 142
BseDI CCNNGG 1 cut(s) 101
BseGI GGATG 4 cut(s) 248, 311, 349, 405
BseLI CCNNNNNNNGG 1 cut(s) 258
BseMII CTCAG 2 cut(s) 209, 421
BseNI ACTGG 4 cut(s) 140, 448, 488, 496
BseRI GAGGAG 1 cut(s) 405
Bsh1236I CGCG 1 cut(s) 199
BshNI GGYRCC 2 cut(s) 336, 416
BsiHKAI GWGCWC 2 cut(s) 246, 408
BsiHKCI CYCGRG 1 cut(s) 377
BsiSI CCGG 2 cut(s) 252, 341
BslI CCNNNNNNNGG 1 cut(s) 258
BsmAI GTCTC 1 cut(s) 152
BsmBI CGTCTC 1 cut(s) 152
BsoBI CYCGRG 1 cut(s) 377
Bsp1286I GDGCHC 3 cut(s) 246, 408, 498
Bsp143I GATC 1 cut(s) 460
BspACI CCGC 1 cut(s) 106
BspCNI CTCAG 2 cut(s) 210, 420
BspFNI CGCG 1 cut(s) 199
BspLI GGNNCC 2 cut(s) 338, 418
BspT107I GGYRCC 2 cut(s) 336, 416
BsrI ACTGG 4 cut(s) 140, 448, 488, 496
BssECI CCNNGG 1 cut(s) 101
BssMI GATC 1 cut(s) 460
BssNAI GTATAC 1 cut(s) 374
BssT1I CCWWGG 1 cut(s) 101
Bst1107I GTATAC 1 cut(s) 374
Bst2UI CCWGG 1 cut(s) 142
BstC8I GCNNGC 1 cut(s) 209
BstDEI CTNAG 3 cut(s) 218, 332, 407
BstF5I GGATG 4 cut(s) 248, 311, 349, 405
BstFNI CGCG 1 cut(s) 199
BstKTI GATC 1 cut(s) 463
BstMAI GTCTC 1 cut(s) 152
BstMBI GATC 1 cut(s) 460
BstMWI GCNNNNNNNGC 2 cut(s) 17, 84
BstNI CCWGG 1 cut(s) 142
BstSCI CCNGG 2 cut(s) 140, 339
BstUI CGCG 1 cut(s) 199
BstZ17I GTATAC 1 cut(s) 374
BtrI CACGTC 2 cut(s) 162, 237
BtsCI GGATG 4 cut(s) 248, 311, 349, 405
BtsIMutI CAGTG 2 cut(s) 415, 481
Cac8I GCNNGC 1 cut(s) 209
Cfr13I GGNCC 3 cut(s) 125, 138, 426
Csp6I GTAC 1 cut(s) 417
CviAII CATG 2 cut(s) 122, 473
CviJI RGCY 7 cut(s) 78, 211, 244, 385, 406, 496, 523
CviKI_1 RGCY 7 cut(s) 78, 211, 244, 385, 406, 496, 523
CviQI GTAC 1 cut(s) 417
DdeI CTNAG 3 cut(s) 218, 332, 407
DpnI GATC 1 cut(s) 462
DpnII GATC 1 cut(s) 460
Ecl136II GAGCTC 2 cut(s) 244, 406
Eco130I CCWWGG 1 cut(s) 101
Eco24I GRGCYC 3 cut(s) 246, 408, 498
Eco47I GGWCC 3 cut(s) 125, 138, 426
Eco53kI GAGCTC 2 cut(s) 244, 406
Eco88I CYCGRG 1 cut(s) 377
EcoICRI GAGCTC 2 cut(s) 244, 406
EcoRI GAATTC 2 cut(s) 29, 449
EcoRII CCWGG 1 cut(s) 140
EcoT14I CCWWGG 1 cut(s) 101
EcoT38I GRGCYC 3 cut(s) 246, 408, 498
ErhI CCWWGG 1 cut(s) 101
Esp3I CGTCTC 1 cut(s) 152
FaeI CATG 2 cut(s) 125, 476
FatI CATG 2 cut(s) 121, 472
FblI GTMKAC 2 cut(s) 36, 373
FokI GGATG 4 cut(s) 235, 318, 356, 412
FriOI GRGCYC 3 cut(s) 246, 408, 498
GsuI CTGGAG 1 cut(s) 465
HapII CCGG 2 cut(s) 252, 341
Hin1II CATG 2 cut(s) 125, 476
HpaII CCGG 2 cut(s) 252, 341
Hpy166II GTNNAC 3 cut(s) 37, 374, 479
Hpy188I TCNGA 1 cut(s) 219
Hpy188III TCNNGA 2 cut(s) 303, 379
Hpy8I GTNNAC 3 cut(s) 37, 374, 479
HpyCH4IV ACGT 2 cut(s) 161, 236
HpyCH4V TGCA 1 cut(s) 272
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 84
HpyF3I CTNAG 3 cut(s) 218, 332, 407
HpySE526I ACGT 2 cut(s) 161, 236
Hsp92II CATG 2 cut(s) 125, 476
KpnI GGTACC 1 cut(s) 420
Kzo9I GATC 1 cut(s) 460
LmnI GCTCC 2 cut(s) 296, 403
LweI GCATC 1 cut(s) 308
MaeII ACGT 2 cut(s) 161, 236
MaeIII GTNAC 1 cut(s) 108
MalI GATC 1 cut(s) 462
MboI GATC 1 cut(s) 460
MboII GAAGA 1 cut(s) 449
MhlI GDGCHC 3 cut(s) 246, 408, 498
MluCI AATT 5 cut(s) 13, 29, 145, 168, 449
MnlI CCTC 4 cut(s) 138, 175, 215, 383
MseI TTAA 1 cut(s) 504
MslI CAYNNNNRTG 2 cut(s) 304, 342
MspI CCGG 2 cut(s) 252, 341
MspR9I CCNGG 2 cut(s) 142, 341
MvaI CCWGG 1 cut(s) 142
MvnI CGCG 1 cut(s) 199
MwoI GCNNNNNNNGC 2 cut(s) 17, 84
NciI CCSGG 1 cut(s) 341
NdeII GATC 1 cut(s) 460
NlaIII CATG 2 cut(s) 125, 476
NlaIV GGNNCC 2 cut(s) 338, 418
NmeAIII GCCGAG 1 cut(s) 411
PaeR7I CTCGAG 1 cut(s) 377
PsiI TTATAA 1 cut(s) 153
Psp124BI GAGCTC 2 cut(s) 246, 408
Psp6I CCWGG 1 cut(s) 140
PspGI CCWGG 1 cut(s) 140
PspN4I GGNNCC 2 cut(s) 338, 418
PspPI GGNCC 3 cut(s) 125, 138, 426
RsaI GTAC 1 cut(s) 418
RsaNI GTAC 1 cut(s) 417
RseI CAYNNNNRTG 2 cut(s) 304, 342
SacI GAGCTC 2 cut(s) 246, 408
SaqAI TTAA 1 cut(s) 504
Sau3AI GATC 1 cut(s) 460
Sau96I GGNCC 3 cut(s) 125, 138, 426
ScrFI CCNGG 2 cut(s) 142, 341
SduI GDGCHC 3 cut(s) 246, 408, 498
SetI ASST 9 cut(s) 80, 143, 164, 186, 239, 246, 263, 408, 422
SfaNI GCATC 1 cut(s) 308
Sfr274I CTCGAG 1 cut(s) 377
SinI GGWCC 3 cut(s) 125, 138, 426
SlaI CTCGAG 1 cut(s) 377
SmiMI CAYNNNNRTG 2 cut(s) 304, 342
SmlI CTYRAG 1 cut(s) 377
SmoI CTYRAG 1 cut(s) 377
Sse9I AATT 5 cut(s) 13, 29, 145, 168, 449
SsiI CCGC 1 cut(s) 106
SstI GAGCTC 2 cut(s) 246, 408
StyD4I CCNGG 2 cut(s) 140, 339
StyI CCWWGG 1 cut(s) 101
TaiI ACGT 2 cut(s) 164, 239
TaqI TCGA 2 cut(s) 27, 378
TasI AATT 5 cut(s) 13, 29, 145, 168, 449
Tru1I TTAA 1 cut(s) 504
Tru9I TTAA 1 cut(s) 504
TscAI CASTG 2 cut(s) 415, 488
TspDTI ATGAA 2 cut(s) 17, 483
TspRI CASTG 2 cut(s) 415, 488
VpaK11BI GGWCC 3 cut(s) 125, 138, 426
XapI RAATTY 3 cut(s) 13, 29, 449
XcmI CCANNNNNNNNNTGG 2 cut(s) 138, 440
XhoI CTCGAG 1 cut(s) 377
XmiI GTMKAC 2 cut(s) 36, 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.