Rmu_sc0002070.1_g000060

Protein PHLOEM PROTEIN 2-LIKE A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002070.1
OG0011580
Physical Location & Seq
Reverse (-)
261066 .. 261365
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002070.1_g000060.1.cds

Sequence Viewer

Length: 300 bp
atgtctgagctctcatccggcgtagagtatgagattgcatacatagtcaaactaacaaatggagcatctggatgggaactccctatcacactcaaactaaggcacccagatggcagagaacaaacgcgccgacaaagtatactcgagaagccgagaggagagtggatggagctcagtggtggtacctttcggaccaaccaagaagaaactggagaactctggtttgatctttgtgaacatggtggacactggaaaactgggctcatcgtcaagggtattattgccaagccgaaacattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

99

Amino Acids

11.26

Weight (kDa)

6.42

Isoelectric Point (pI)

32.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 182
AccB1I GGYRCC 2 cut(s) 102, 182
AccI GTMKAC 1 cut(s) 139
AccII CGCG 1 cut(s) 127
AfaI GTAC 1 cut(s) 184
AluBI AGCT 2 cut(s) 10, 172
AluI AGCT 2 cut(s) 10, 172
Alw21I GWGCWC 2 cut(s) 12, 174
Ama87I CYCGRG 1 cut(s) 143
Asp718I GGTACC 1 cut(s) 182
AspLEI GCGC 1 cut(s) 129
AspS9I GGNCC 1 cut(s) 192
AvaI CYCGRG 1 cut(s) 143
AvaII GGWCC 1 cut(s) 192
BanI GGYRCC 2 cut(s) 102, 182
BanII GRGCYC 3 cut(s) 12, 174, 264
Bbv12I GWGCWC 2 cut(s) 12, 174
BccI CCATC 3 cut(s) 66, 104, 160
Bme18I GGWCC 1 cut(s) 192
BmeT110I CYCGRG 1 cut(s) 143
BmgT120I GGNCC 1 cut(s) 192
BmiI GGNNCC 2 cut(s) 104, 184
BmrI ACTGGG 1 cut(s) 267
BmsI GCATC 1 cut(s) 74
BmuI ACTGGG 1 cut(s) 267
BpmI CTGGAG 1 cut(s) 231
Bse1I ACTGG 3 cut(s) 214, 254, 262
BseGI GGATG 3 cut(s) 14, 77, 171
BseMII CTCAG 1 cut(s) 187
BseNI ACTGG 3 cut(s) 214, 254, 262
BseRI GAGGAG 1 cut(s) 171
Bsh1236I CGCG 1 cut(s) 127
BshNI GGYRCC 2 cut(s) 102, 182
BsiHKAI GWGCWC 2 cut(s) 12, 174
BsiHKCI CYCGRG 1 cut(s) 143
BsiSI CCGG 1 cut(s) 18
BsoBI CYCGRG 1 cut(s) 143
Bsp1286I GDGCHC 3 cut(s) 12, 174, 264
Bsp143I GATC 1 cut(s) 226
BspCNI CTCAG 1 cut(s) 186
BspFNI CGCG 1 cut(s) 127
BspLI GGNNCC 2 cut(s) 104, 184
BspT107I GGYRCC 2 cut(s) 102, 182
BsrI ACTGG 3 cut(s) 214, 254, 262
BssMI GATC 1 cut(s) 226
BssNAI GTATAC 1 cut(s) 140
Bst1107I GTATAC 1 cut(s) 140
BstDEI CTNAG 3 cut(s) 6, 98, 173
BstF5I GGATG 3 cut(s) 14, 77, 171
BstFNI CGCG 1 cut(s) 127
BstHHI GCGC 1 cut(s) 129
BstKTI GATC 1 cut(s) 229
BstMBI GATC 1 cut(s) 226
BstUI CGCG 1 cut(s) 127
BstZ17I GTATAC 1 cut(s) 140
BtsCI GGATG 3 cut(s) 14, 77, 171
BtsIMutI CAGTG 2 cut(s) 181, 247
CfoI GCGC 1 cut(s) 129
Cfr13I GGNCC 1 cut(s) 192
Csp6I GTAC 1 cut(s) 183
CviAII CATG 1 cut(s) 239
CviJI RGCY 5 cut(s) 10, 151, 172, 262, 289
CviKI_1 RGCY 5 cut(s) 10, 151, 172, 262, 289
CviQI GTAC 1 cut(s) 183
DdeI CTNAG 3 cut(s) 6, 98, 173
DpnI GATC 1 cut(s) 228
DpnII GATC 1 cut(s) 226
Ecl136II GAGCTC 2 cut(s) 10, 172
Eco24I GRGCYC 3 cut(s) 12, 174, 264
Eco47I GGWCC 1 cut(s) 192
Eco53kI GAGCTC 2 cut(s) 10, 172
Eco88I CYCGRG 1 cut(s) 143
EcoICRI GAGCTC 2 cut(s) 10, 172
EcoT38I GRGCYC 3 cut(s) 12, 174, 264
FaeI CATG 1 cut(s) 242
FaiI YATR 5 cut(s) 30, 40, 44, 140, 240
FatI CATG 1 cut(s) 238
FblI GTMKAC 1 cut(s) 139
FokI GGATG 2 cut(s) 84, 178
FriOI GRGCYC 3 cut(s) 12, 174, 264
GlaI GCGC 1 cut(s) 128
GsuI CTGGAG 1 cut(s) 231
HapII CCGG 1 cut(s) 18
HhaI GCGC 1 cut(s) 129
Hin1II CATG 1 cut(s) 242
Hin6I GCGC 1 cut(s) 127
HinP1I GCGC 1 cut(s) 127
HpaII CCGG 1 cut(s) 18
Hpy166II GTNNAC 3 cut(s) 140, 236, 245
Hpy188I TCNGA 2 cut(s) 7, 192
Hpy188III TCNNGA 2 cut(s) 69, 145
Hpy8I GTNNAC 3 cut(s) 140, 236, 245
HpyCH4V TGCA 1 cut(s) 38
HpyF3I CTNAG 3 cut(s) 6, 98, 173
Hsp92II CATG 1 cut(s) 242
HspAI GCGC 1 cut(s) 127
KpnI GGTACC 1 cut(s) 186
Kzo9I GATC 1 cut(s) 226
LmnI GCTCC 2 cut(s) 62, 169
LpnPI CCDG 7 cut(s) 31, 54, 120, 195, 205, 235, 243
LweI GCATC 1 cut(s) 74
MalI GATC 1 cut(s) 228
MboI GATC 1 cut(s) 226
MboII GAAGA 1 cut(s) 215
MhlI GDGCHC 3 cut(s) 12, 174, 264
MnlI CCTC 1 cut(s) 149
MslI CAYNNNNRTG 2 cut(s) 70, 108
MspI CCGG 1 cut(s) 18
MvnI CGCG 1 cut(s) 127
NdeII GATC 1 cut(s) 226
NlaIII CATG 1 cut(s) 242
NlaIV GGNNCC 2 cut(s) 104, 184
NmeAIII GCCGAG 1 cut(s) 177
PaeR7I CTCGAG 1 cut(s) 143
Psp124BI GAGCTC 2 cut(s) 12, 174
PspN4I GGNNCC 2 cut(s) 104, 184
PspPI GGNCC 1 cut(s) 192
RsaI GTAC 1 cut(s) 184
RsaNI GTAC 1 cut(s) 183
RseI CAYNNNNRTG 2 cut(s) 70, 108
SacI GAGCTC 2 cut(s) 12, 174
Sau3AI GATC 1 cut(s) 226
Sau96I GGNCC 1 cut(s) 192
SduI GDGCHC 3 cut(s) 12, 174, 264
SetI ASST 3 cut(s) 12, 174, 188
SfaNI GCATC 1 cut(s) 74
Sfr274I CTCGAG 1 cut(s) 143
SinI GGWCC 1 cut(s) 192
SlaI CTCGAG 1 cut(s) 143
SmiMI CAYNNNNRTG 2 cut(s) 70, 108
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
SstI GAGCTC 2 cut(s) 12, 174
TaqI TCGA 1 cut(s) 144
TscAI CASTG 2 cut(s) 181, 254
TspRI CASTG 2 cut(s) 181, 254
VpaK11BI GGWCC 1 cut(s) 192
XcmI CCANNNNNNNNNTGG 1 cut(s) 206
XhoI CTCGAG 1 cut(s) 143
XmiI GTMKAC 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.