pycom11g07540

Copper transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0011018
Physical Location & Seq
Forward (+)
5806620 .. 5807060
441 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 441 bp
ATGGATGGCATGGATCACGGCCATGGCATGGGTACTGGCATGGCATCATCACCATCATCATCCATGATGGACGGCACGATGATGCACTTGACCTTCTTCTGGGGCACAACGGAGGAATTACTCTTCTCCAAATGGCCAGGCACAAACACGGGCATGTATTACGTATCCCTACTCTTTGTATTTGCCCTAGCTGTCCTCGTCGAGTGGCTCTCCTACTGCCGTCTGATCAGGGCCGGCGCAAGCGACGTCGTTTGTGGAGTGACTCAGACTCTTTTGCATGCAATTAGGGTTGGGTTAGCTTATTTGGTGATGTTGGCGGTCATGTCGTTTAATGCTGGGGTGTTTCTTGTGGCGGTGGCTGGGCATGCTGTTGGGTTCTTGCTTTTTGGGAGTAGGGTTTTTAAGAAGAAATCGGATGTTGATGATAAGAGACGGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01524 ko04978 map01524 map04978
Pfam Domains
Protein Families
Ctr

Protein Analysis

147

Amino Acids

15.96

Weight (kDa)

7.85

Isoelectric Point (pI)

27.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ctr PF04145 31 - 74 5.3e-09 Ctr copper transporter family
Ctr PF04145 87 - 129 2.2e-10 Ctr copper transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011018)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26975 AT3G46900 AT5G59030
fragaria_vesca FvH4_3g37240
malus_domestica MD03G1082600.v1.1 MD11G1090600.v1.1
prunus_persica Prupe.6G066900_v2.0.a1
pyrus_communis pycom11g07530 pycom11g07540
rosa_chinensis RchiOBHm_Chr5g0066991
rosa_laevigata RLG00000035901
rosa_multiflora Rmu_co8302749.1_g000001 Rmu_sc0000205.1_g000003 Rmu_sc0001698.1_g000004
rosa_roxburghii Rroxscaffold_1G00014120
rosa_rugosa Rorug05G0380600
rosa_samantha Rh5BG457100 Rh5CG479200 Rh5DG471800
rosa_wichuraiana Rw5G041170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 249
AccB7I CCANNNNNTGG 1 cut(s) 28
AciI CCGC 2 cut(s) 317, 353
AclWI GGATC 1 cut(s) 21
AcoI YGGCCR 2 cut(s) 19, 134
AcyI GRCGYC 1 cut(s) 246
AfaI GTAC 1 cut(s) 34
AfiI CCNNNNNNNGG 2 cut(s) 28, 99
AjnI CCWGG 1 cut(s) 136
AluBI AGCT 2 cut(s) 191, 299
AluI AGCT 2 cut(s) 191, 299
Alw26I GTCTC 1 cut(s) 424
AlwI GGATC 1 cut(s) 21
AoxI GGCC 3 cut(s) 19, 134, 231
AspLEI GCGC 1 cut(s) 239
AspS9I GGNCC 1 cut(s) 231
AsuHPI GGTGA 2 cut(s) 42, 319
BaeGI GKGCMC 1 cut(s) 107
BalI TGGCCA 1 cut(s) 136
BccI CCATC 2 cut(s) 61, 61
BceAI ACGGC 3 cut(s) 34, 88, 204
BciT130I CCWGG 1 cut(s) 138
BciVI GTATCC 1 cut(s) 175
BclI TGATCA 1 cut(s) 225
BcoDI GTCTC 1 cut(s) 424
BfaI CTAG 1 cut(s) 188
BfuI GTATCC 1 cut(s) 175
Bme1390I CCNGG 1 cut(s) 138
BmgT120I GGNCC 1 cut(s) 231
BmrFI CCNGG 1 cut(s) 138
BmsI GCATC 2 cut(s) 53, 72
BplI GAGNNNNNCTC 2 cut(s) 194, 226
BsaAI YACGTR 1 cut(s) 163
BsaHI GRCGYC 1 cut(s) 246
BsaJI CCNNGG 1 cut(s) 22
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 99
Bse118I RCCGGY 1 cut(s) 233
Bse1I ACTGG 1 cut(s) 40
BseBI CCWGG 1 cut(s) 138
BseDI CCNNGG 1 cut(s) 22
BseGI GGATG 3 cut(s) 10, 59, 421
BseLI CCNNNNNNNGG 2 cut(s) 28, 99
BseMII CTCAG 1 cut(s) 278
BseNI ACTGG 1 cut(s) 40
BseSI GKGCMC 1 cut(s) 107
BseYI CCCAGC 2 cut(s) 335, 359
BshFI GGCC 3 cut(s) 21, 136, 233
BsiSI CCGG 1 cut(s) 234
BslI CCNNNNNNNGG 2 cut(s) 28, 99
BsmAI GTCTC 1 cut(s) 424
BsmBI CGTCTC 1 cut(s) 424
BsnI GGCC 3 cut(s) 21, 136, 233
Bsp1286I GDGCHC 1 cut(s) 107
Bsp143I GATC 2 cut(s) 13, 225
Bsp19I CCATGG 1 cut(s) 22
BspACI CCGC 2 cut(s) 317, 353
BspANI GGCC 3 cut(s) 21, 136, 233
BspCNI CTCAG 1 cut(s) 277
BspPI GGATC 1 cut(s) 21
BsrFI RCCGGY 1 cut(s) 233
BsrI ACTGG 1 cut(s) 40
BssAI RCCGGY 1 cut(s) 233
BssECI CCNNGG 1 cut(s) 22
BssMI GATC 2 cut(s) 13, 225
BssNI GRCGYC 1 cut(s) 246
BssT1I CCWWGG 1 cut(s) 22
Bst2UI CCWGG 1 cut(s) 138
Bst4CI ACNGT 1 cut(s) 435
Bst6I CTCTTC 1 cut(s) 128
BstACI GRCGYC 1 cut(s) 246
BstBAI YACGTR 1 cut(s) 163
BstC8I GCNNGC 4 cut(s) 235, 241, 279, 366
BstDEI CTNAG 1 cut(s) 264
BstDSI CCRYGG 1 cut(s) 22
BstF5I GGATG 3 cut(s) 10, 59, 421
BstHHI GCGC 1 cut(s) 239
BstKTI GATC 2 cut(s) 16, 228
BstMAI GTCTC 1 cut(s) 424
BstMBI GATC 2 cut(s) 13, 225
BstMWI GCNNNNNNNGC 1 cut(s) 365
BstNI CCWGG 1 cut(s) 138
BstNSI RCATGY 3 cut(s) 157, 281, 368
BstSCI CCNGG 1 cut(s) 136
BstSLI GKGCMC 1 cut(s) 107
BstSNI TACGTA 1 cut(s) 163
BsuI GTATCC 1 cut(s) 175
BsuRI GGCC 3 cut(s) 21, 136, 233
BtgI CCRYGG 1 cut(s) 22
BtsCI GGATG 3 cut(s) 10, 59, 421
Cac8I GCNNGC 4 cut(s) 235, 241, 279, 366
CfoI GCGC 1 cut(s) 239
Cfr10I RCCGGY 1 cut(s) 233
Cfr13I GGNCC 1 cut(s) 231
Csp6I GTAC 1 cut(s) 33
CviAII CATG 9 cut(s) 10, 23, 28, 40, 64, 154, 278, 322, 365
CviJI RGCY 7 cut(s) 21, 136, 191, 208, 233, 299, 359
CviKI_1 RGCY 7 cut(s) 21, 136, 191, 208, 233, 299, 359
CviQI GTAC 1 cut(s) 33
DdeI CTNAG 1 cut(s) 264
DpnI GATC 2 cut(s) 15, 227
DpnII GATC 2 cut(s) 13, 225
EaeI YGGCCR 2 cut(s) 19, 134
Eam1104I CTCTTC 1 cut(s) 128
EarI CTCTTC 1 cut(s) 128
Eco105I TACGTA 1 cut(s) 163
Eco130I CCWWGG 1 cut(s) 22
EcoRII CCWGG 1 cut(s) 136
EcoT14I CCWWGG 1 cut(s) 22
ErhI CCWWGG 1 cut(s) 22
Esp3I CGTCTC 1 cut(s) 424
FaeI CATG 9 cut(s) 13, 26, 31, 43, 67, 157, 281, 325, 368
FaiI YATR 9 cut(s) 11, 24, 29, 41, 65, 155, 279, 323, 366
FatI CATG 9 cut(s) 9, 22, 27, 39, 63, 153, 277, 321, 364
FbaI TGATCA 1 cut(s) 225
FokI GGATG 3 cut(s) 17, 46, 428
FspBI CTAG 1 cut(s) 188
GlaI GCGC 1 cut(s) 238
GsaI CCCAGC 2 cut(s) 339, 363
HaeIII GGCC 3 cut(s) 21, 136, 233
HapII CCGG 1 cut(s) 234
HhaI GCGC 1 cut(s) 239
Hin1I GRCGYC 1 cut(s) 246
Hin1II CATG 9 cut(s) 13, 26, 31, 43, 67, 157, 281, 325, 368
Hin6I GCGC 1 cut(s) 237
HinP1I GCGC 1 cut(s) 237
HinfI GANTC 2 cut(s) 262, 268
HpaII CCGG 1 cut(s) 234
HphI GGTGA 2 cut(s) 42, 319
Hpy188I TCNGA 4 cut(s) 225, 267, 415, 440
Hpy99I CGWCG 3 cut(s) 203, 248, 251
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 1 cut(s) 435
HpyCH4IV ACGT 2 cut(s) 162, 246
HpyCH4V TGCA 3 cut(s) 85, 277, 281
HpyF10VI GCNNNNNNNGC 1 cut(s) 365
HpyF3I CTNAG 1 cut(s) 264
HpySE526I ACGT 2 cut(s) 162, 246
Hsp92I GRCGYC 1 cut(s) 246
Hsp92II CATG 9 cut(s) 13, 26, 31, 43, 67, 157, 281, 325, 368
HspAI GCGC 1 cut(s) 237
KroI GCCGGC 1 cut(s) 233
KroNI GCCGGC 1 cut(s) 235
Ksp22I TGATCA 1 cut(s) 225
Kzo9I GATC 2 cut(s) 13, 225
LpnPI CCDG 8 cut(s) 21, 85, 123, 150, 214, 247, 321, 345
LweI GCATC 2 cut(s) 53, 72
MaeI CTAG 1 cut(s) 188
MaeII ACGT 2 cut(s) 162, 246
MaeIII GTNAC 1 cut(s) 259
MalI GATC 2 cut(s) 15, 227
MboI GATC 2 cut(s) 13, 225
MboII GAAGA 3 cut(s) 88, 115, 418
MhlI GDGCHC 1 cut(s) 107
MlsI TGGCCA 1 cut(s) 136
MluCI AATT 2 cut(s) 116, 282
MluNI TGGCCA 1 cut(s) 136
MlyI GAGTC 2 cut(s) 256, 262
MnlI CCTC 2 cut(s) 106, 206
Mox20I TGGCCA 1 cut(s) 136
MroNI GCCGGC 1 cut(s) 233
MscI TGGCCA 1 cut(s) 136
MseI TTAA 2 cut(s) 330, 402
MslI CAYNNNNRTG 3 cut(s) 21, 80, 152
Msp20I TGGCCA 1 cut(s) 136
MspI CCGG 1 cut(s) 234
MspR9I CCNGG 1 cut(s) 138
MvaI CCWGG 1 cut(s) 138
MwoI GCNNNNNNNGC 1 cut(s) 365
NaeI GCCGGC 1 cut(s) 235
NcoI CCATGG 1 cut(s) 22
NdeII GATC 2 cut(s) 13, 225
NgoMIV GCCGGC 1 cut(s) 233
NlaIII CATG 9 cut(s) 13, 26, 31, 43, 67, 157, 281, 325, 368
NmuCI GTSAC 1 cut(s) 259
NspI RCATGY 3 cut(s) 157, 281, 368
PaeI GCATGC 2 cut(s) 281, 368
PdiI GCCGGC 1 cut(s) 235
PflMI CCANNNNNTGG 1 cut(s) 28
PleI GAGTC 2 cut(s) 256, 262
PpsI GAGTC 2 cut(s) 256, 262
Ppu21I YACGTR 1 cut(s) 163
Psp6I CCWGG 1 cut(s) 136
PspFI CCCAGC 2 cut(s) 335, 359
PspGI CCWGG 1 cut(s) 136
PspPI GGNCC 1 cut(s) 231
RsaI GTAC 1 cut(s) 34
RsaNI GTAC 1 cut(s) 33
RseI CAYNNNNRTG 3 cut(s) 21, 80, 152
SaqAI TTAA 2 cut(s) 330, 402
Sau3AI GATC 2 cut(s) 13, 225
Sau96I GGNCC 1 cut(s) 231
SchI GAGTC 2 cut(s) 256, 262
ScrFI CCNGG 1 cut(s) 138
SduI GDGCHC 1 cut(s) 107
SetI ASST 5 cut(s) 95, 165, 193, 249, 301
SfaNI GCATC 2 cut(s) 53, 72
SmiMI CAYNNNNRTG 3 cut(s) 21, 80, 152
SnaBI TACGTA 1 cut(s) 163
SphI GCATGC 2 cut(s) 281, 368
Sse9I AATT 2 cut(s) 116, 282
SsiI CCGC 2 cut(s) 317, 353
SspMI CTAG 1 cut(s) 188
StyD4I CCNGG 1 cut(s) 136
StyI CCWWGG 1 cut(s) 22
TaaI ACNGT 1 cut(s) 435
TaiI ACGT 2 cut(s) 165, 249
TaqI TCGA 1 cut(s) 201
TasI AATT 2 cut(s) 116, 282
Tru1I TTAA 2 cut(s) 330, 402
Tru9I TTAA 2 cut(s) 330, 402
TseFI GTSAC 1 cut(s) 259
Tsp45I GTSAC 1 cut(s) 259
TspGWI ACGGA 1 cut(s) 125
Van91I CCANNNNNTGG 1 cut(s) 28
XceI RCATGY 3 cut(s) 157, 281, 368
XspI CTAG 1 cut(s) 188
ZraI GACGTC 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.