Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0001856

Physical Location & Seq

Genomic Coordinates Forward (+)

7491031 .. 7494353

Gene Structure 3323 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGCAAACAATTCTACCAATGGGGAGCACCAGACCACAACAAAGCCTCCTCCTTTGCCGTCCCCTTTGCGGTTTTCCAAGTTTTTTCAGTCCAATATGAGAATTTTGGTTACCGGAGGAGCTGGATTCATAGGTTCTCACCTGGTTGACAGGTTAATGGAAAATGAAAAGAACGAGGTTATTGTCGTCGATAACTACTTCACTGGCTCCAAGGACAATCTGAAAAAGTGGATTGGTCATCCCAGATTTGAGCTTATTCGTCATGATGTCACAGAGACATTGTTGGTCGAGGTTGATCGGATTTACCATCTTGCGTGCCCAGCTTCTCCAATTTTTTACAAATACAATCCTGTAAAGACGATAAAAACAAACGTGATTGGCACACTGAACATGCTCGGACTTGCAAAGCGAGTTGGAGCAAGGATTCTGCAGACATCCACTTCAGAGGTATATGGAGATCCTCTTGTGCATCCACAACCTGAAAGCTACTGGGGTAATGTTAACCCAATTGGAGTAAGGAGCTGCTATGATGAGGGCAAGCGTGTTGCTGAGACCTTGATGTTCGACTATCATAGGCAGCATGGCATAGAAATACGTATTGCCAGAATATTCAATACATACGGCCCTCGCATGAATATTGATGATGGGCGTGTCGTCAGCAATTTTATAGCTCAAGCACTTCGTGATGAACCTTTGACAGTGCAAAATCCTGGGACTCAAACTCGCAGTTTCTGTTATGTCTCTGACCTGGTTGATGGCCTCATTCGTCTGATGGAAGGAGAGCACACTGGACCCATAAACCTCGGAAACCCTGGTGAATTTACAATGCTTGAACTTGCAGAGACAGTGAAGGAGCTCATCAACCCTGAGGTGGAGATCAAGAGGGTGGAGAACACTCCGGACGATCCTAGACAGAGAAAACCCGACATCACAAAGGCAAAAGAATTGCTGGGATGGGAATTCCATGAACGATCAAGTTGCGCGAAGGCCTACCTCTCATGGAGGAAGATTTCCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005975 GO:0005996 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016043 GO:0016829 GO:0016830 GO:0016831 GO:0019321 GO:0022607 GO:0036094 GO:0042732 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043933 GO:0044085 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046983 GO:0048037 GO:0048040 GO:0050662 GO:0051259 GO:0051262 GO:0051287 GO:0065003 GO:0070403 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

340

Amino Acids

38.48

Weight (kDa)

6.81

Isoelectric Point (pI)

30.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RmlD_sub_bind	PF04321	33 - 291	1.6e-09	RmlD substrate binding domain
Epimerase	PF01370	35 - 269	8.9e-48	NAD dependent epimerase/dehydratase family
Polysacc_synt_2	PF02719	35 - 140	3.5e-08	Polysaccharide biosynthesis protein
GDP_Man_Dehyd	PF16363	36 - 320	4.1e-48	GDP-mannose 4,6 dehydratase
3Beta_HSD	PF01073	36 - 187	1e-11	3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_4	PF07993	89 - 205	1e-06	Male sterility protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001856)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550 FvH4_3g35550
malus_domestica	MD03G1096800.v1.1 MD11G1143300.v1.1
prunus_persica	Prupe.6G081100_v2.0.a1 Prupe.6G081100_v2.0.a1 Prupe.6G081100_v2.0.a1 Prupe.6G081100_v2.0.a1 Prupe.6G081100_v2.0.a1 Prupe.6G081100_v2.0.a1
pyrus_communis	pycom03g08000 pycom11g09310
rosa_chinensis	RchiOBHm_Chr5g0063761
rosa_laevigata	RLG00000035666
rosa_multiflora	Rmu_sc0002724.1_g000023
rosa_roxburghii	Rroxscaffold_1G00017090 Rroxscaffold_1G00037850 Rroxscaffold_3G00246740
rosa_rugosa	Rorug03G0248000 Rorug05G0359100 Rorug05G0359200 Rorug05G0359200 Rorug05G0359200 Rorug05G0359200 Rorug05G0359300 Rorug05G0359400
rosa_samantha	Rh2BG210700 Rh5AG128600 Rh5AG389400 Rh5BG433300 Rh5CG456500 Rh5DG446900 Rh5DG449700 Rh6AG145900
rosa_wichuraiana	Rw4G004490 Rw5G039270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	983
AccIII	TCCGGA	1 cut(s)	898
AciI	CCGC	1 cut(s)	70
AclWI	GGATC	2 cut(s)	452, 899
AcsI	RAATTY	3 cut(s)	102, 818, 959
AcuI	CTGAAG	1 cut(s)	426
AdeI	CACNNNGTG	1 cut(s)	683
AfiI	CCNNNNNNNGG	2 cut(s)	69, 871
AgsI	TTSAA	2 cut(s)	613, 833
AjnI	CCWGG	4 cut(s)	141, 709, 747, 811
AluBI	AGCT	7 cut(s)	122, 253, 323, 486, 522, 671, 856
AluI	AGCT	7 cut(s)	122, 253, 323, 486, 522, 671, 856
Alw21I	GWGCWC	3 cut(s)	30, 786, 858
Alw26I	GTCTC	4 cut(s)	269, 545, 745, 836
AlwI	GGATC	2 cut(s)	452, 899
AlwNI	CAGNNNCTG	1 cut(s)	732
Aor13HI	TCCGGA	1 cut(s)	898
AoxI	GGCC	3 cut(s)	622, 757, 987
ApeKI	GCWGC	2 cut(s)	522, 577
ApoI	RAATTY	3 cut(s)	102, 818, 959
AspLEI	GCGC	1 cut(s)	983
AspS9I	GGNCC	2 cut(s)	623, 791
AsuHPI	GGTGA	2 cut(s)	131, 827
AvaII	GGWCC	1 cut(s)	791
AxyI	CCTNAGG	1 cut(s)	867
BaeGI	GKGCMC	1 cut(s)	320
BanII	GRGCYC	1 cut(s)	858
Bbv12I	GWGCWC	3 cut(s)	30, 786, 858
BbvI	GCAGC	2 cut(s)	509, 589
BccI	CCATC	5 cut(s)	315, 638, 749, 766, 948
BceAI	ACGGC	2 cut(s)	43, 637
BcgI	CGANNNNNNTGC	2 cut(s)	960, 994
BciT130I	CCWGG	4 cut(s)	143, 711, 749, 813
BcoDI	GTCTC	4 cut(s)	269, 545, 745, 836
BfaI	CTAG	1 cut(s)	909
BfmI	CTRYAG	1 cut(s)	428
BisI	GCNGC	2 cut(s)	523, 578
BlsI	GCNGC	2 cut(s)	524, 579
Bme1390I	CCNGG	4 cut(s)	143, 711, 749, 813
Bme18I	GGWCC	1 cut(s)	791
BmgT120I	GGNCC	2 cut(s)	623, 791
BmiI	GGNNCC	2 cut(s)	208, 793
BmrFI	CCNGG	4 cut(s)	143, 711, 749, 813
BmrI	ACTGGG	1 cut(s)	499
BmsI	GCATC	1 cut(s)	478
BmuI	ACTGGG	1 cut(s)	499
BpuEI	CTTGAG	1 cut(s)	657
BsaAI	YACGTR	1 cut(s)	596
BsaI	GGTCTC	1 cut(s)	545
BsaJI	CCNNGG	4 cut(s)	210, 710, 802, 811
BsaWI	WCCGGW	2 cut(s)	113, 898
BsaXI	ACNNNNNCTCC	2 cut(s)	31, 61
Bsc4I	CCNNNNNNNGG	2 cut(s)	69, 871
Bse1I	ACTGG	3 cut(s)	208, 494, 793
Bse21I	CCTNAGG	1 cut(s)	867
BseAI	TCCGGA	1 cut(s)	898
BseBI	CCWGG	4 cut(s)	143, 711, 749, 813
BseDI	CCNNGG	4 cut(s)	210, 710, 802, 811
BseGI	GGATG	4 cut(s)	238, 434, 469, 959
BseLI	CCNNNNNNNGG	2 cut(s)	69, 871
BseMII	CTCAG	2 cut(s)	540, 858
BseNI	ACTGG	3 cut(s)	208, 494, 793
BseRI	GAGGAG	2 cut(s)	39, 132
BseSI	GKGCMC	1 cut(s)	320
BseXI	GCAGC	2 cut(s)	509, 589
BseYI	CCCAGC	2 cut(s)	319, 949
Bsh1236I	CGCG	1 cut(s)	983
BshFI	GGCC	3 cut(s)	624, 759, 989
BsiHKAI	GWGCWC	3 cut(s)	30, 786, 858
BsiSI	CCGG	2 cut(s)	114, 899
BslFI	GGGAC	2 cut(s)	46, 727
BslI	CCNNNNNNNGG	2 cut(s)	69, 871
BsmAI	GTCTC	4 cut(s)	269, 545, 745, 836
BsmFI	GGGAC	2 cut(s)	46, 727
BsnI	GGCC	3 cut(s)	624, 759, 989
Bso31I	GGTCTC	1 cut(s)	545
Bsp1286I	GDGCHC	4 cut(s)	30, 320, 786, 858
Bsp13I	TCCGGA	1 cut(s)	898
Bsp143I	GATC	5 cut(s)	295, 457, 876, 904, 971
BspACI	CCGC	1 cut(s)	70
BspANI	GGCC	3 cut(s)	624, 759, 989
BspCNI	CTCAG	2 cut(s)	541, 859
BspEI	TCCGGA	1 cut(s)	898
BspFNI	CGCG	1 cut(s)	983
BspHI	TCATGA	1 cut(s)	262
BspLI	GGNNCC	2 cut(s)	208, 793
BspMAI	CTGCAG	1 cut(s)	432
BspPI	GGATC	2 cut(s)	452, 899
BspTNI	GGTCTC	1 cut(s)	545
BsrI	ACTGG	3 cut(s)	208, 494, 793
BssECI	CCNNGG	4 cut(s)	210, 710, 802, 811
BssMI	GATC	5 cut(s)	295, 457, 876, 904, 971
BssT1I	CCWWGG	1 cut(s)	210
Bst2UI	CCWGG	4 cut(s)	143, 711, 749, 813
Bst4CI	ACNGT	2 cut(s)	700, 847
BstBAI	YACGTR	1 cut(s)	596
BstC8I	GCNNGC	2 cut(s)	316, 539
BstDEI	CTNAG	2 cut(s)	549, 867
BstEII	GGTNACC	1 cut(s)	109
BstF5I	GGATG	4 cut(s)	238, 434, 469, 959
BstFNI	CGCG	1 cut(s)	983
BstHHI	GCGC	1 cut(s)	983
BstKTI	GATC	5 cut(s)	298, 460, 879, 907, 974
BstMAI	GTCTC	4 cut(s)	269, 545, 745, 836
BstMBI	GATC	5 cut(s)	295, 457, 876, 904, 971
BstMWI	GCNNNNNNNGC	1 cut(s)	320
BstNI	CCWGG	4 cut(s)	143, 711, 749, 813
BstNSI	RCATGY	1 cut(s)	394
BstPI	GGTNACC	1 cut(s)	109
BstSCI	CCNGG	4 cut(s)	141, 709, 747, 811
BstSFI	CTRYAG	1 cut(s)	428
BstSLI	GKGCMC	1 cut(s)	320
BstSNI	TACGTA	1 cut(s)	596
BstUI	CGCG	1 cut(s)	983
BstV1I	GCAGC	2 cut(s)	509, 589
BstX2I	RGATCY	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	457
Bsu36I	CCTNAGG	1 cut(s)	867
BsuRI	GGCC	3 cut(s)	624, 759, 989
BtsCI	GGATG	4 cut(s)	238, 434, 469, 959
BtsIMutI	CAGTG	5 cut(s)	201, 383, 705, 786, 852
Cac8I	GCNNGC	2 cut(s)	316, 539
CaiI	CAGNNNCTG	1 cut(s)	732
CciI	TCATGA	1 cut(s)	262
CfoI	GCGC	1 cut(s)	983
Cfr13I	GGNCC	2 cut(s)	623, 791
CsiI	ACCWGGT	2 cut(s)	141, 747
CviAII	CATG	6 cut(s)	263, 391, 581, 631, 965, 999
DdeI	CTNAG	2 cut(s)	549, 867
DpnI	GATC	5 cut(s)	297, 459, 878, 906, 973
DpnII	GATC	5 cut(s)	295, 457, 876, 904, 971
DraIII	CACNNNGTG	1 cut(s)	683
Ecl136II	GAGCTC	1 cut(s)	856
Eco105I	TACGTA	1 cut(s)	596
Eco130I	CCWWGG	1 cut(s)	210
Eco147I	AGGCCT	1 cut(s)	989
Eco24I	GRGCYC	1 cut(s)	858
Eco31I	GGTCTC	1 cut(s)	545
Eco47I	GGWCC	1 cut(s)	791
Eco53kI	GAGCTC	1 cut(s)	856
Eco57I	CTGAAG	1 cut(s)	426
Eco81I	CCTNAGG	1 cut(s)	867
Eco91I	GGTNACC	1 cut(s)	109
EcoICRI	GAGCTC	1 cut(s)	856
EcoO65I	GGTNACC	1 cut(s)	109
EcoRI	GAATTC	1 cut(s)	959
EcoRII	CCWGG	4 cut(s)	141, 709, 747, 811
EcoT14I	CCWWGG	1 cut(s)	210
EcoT38I	GRGCYC	1 cut(s)	858
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	6 cut(s)	266, 394, 584, 634, 968, 1002
FaqI	GGGAC	2 cut(s)	46, 727
FatI	CATG	6 cut(s)	262, 390, 580, 630, 964, 998
Fnu4HI	GCNGC	2 cut(s)	523, 578
FokI	GGATG	4 cut(s)	225, 421, 456, 966
FriOI	GRGCYC	1 cut(s)	858
Fsp4HI	GCNGC	2 cut(s)	523, 578
FspBI	CTAG	1 cut(s)	909
GlaI	GCGC	1 cut(s)	982
GluI	GCNGC	2 cut(s)	523, 578
GsaI	CCCAGC	2 cut(s)	323, 953
HaeIII	GGCC	3 cut(s)	624, 759, 989
HapII	CCGG	2 cut(s)	114, 899
HhaI	GCGC	1 cut(s)	983
Hin1II	CATG	6 cut(s)	266, 394, 584, 634, 968, 1002
Hin6I	GCGC	1 cut(s)	981
HinP1I	GCGC	1 cut(s)	981
HincII	GTYRAC	2 cut(s)	148, 502
HindII	GTYRAC	2 cut(s)	148, 502
HinfI	GANTC	3 cut(s)	126, 424, 715
HpaI	GTTAAC	1 cut(s)	502
HpaII	CCGG	2 cut(s)	114, 899
HphI	GGTGA	2 cut(s)	131, 827
Hpy166II	GTNNAC	2 cut(s)	148, 502
Hpy188I	TCNGA	8 cut(s)	222, 300, 398, 445, 745, 771, 806, 1015
Hpy188III	TCNNGA	4 cut(s)	263, 683, 880, 899
Hpy8I	GTNNAC	2 cut(s)	148, 502
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	3 cut(s)	770, 844, 979
HpyCH4III	ACNGT	2 cut(s)	700, 847
HpyCH4IV	ACGT	2 cut(s)	372, 595
HpyCH4V	TGCA	5 cut(s)	404, 430, 469, 703, 839
HpyF10VI	GCNNNNNNNGC	1 cut(s)	320
HpyF3I	CTNAG	2 cut(s)	549, 867
HpySE526I	ACGT	2 cut(s)	372, 595
Hsp92II	CATG	6 cut(s)	266, 394, 584, 634, 968, 1002
HspAI	GCGC	1 cut(s)	981
Kpn2I	TCCGGA	1 cut(s)	898
KspAI	GTTAAC	1 cut(s)	502
Kzo9I	GATC	5 cut(s)	295, 457, 876, 904, 971
LmnI	GCTCC	6 cut(s)	25, 119, 212, 416, 519, 853
Lsp1109I	GCAGC	2 cut(s)	509, 589
LweI	GCATC	1 cut(s)	478
MabI	ACCWGGT	2 cut(s)	141, 747
MaeI	CTAG	1 cut(s)	909
MaeII	ACGT	2 cut(s)	372, 595
MaeIII	GTNAC	2 cut(s)	109, 268
MalI	GATC	5 cut(s)	297, 459, 878, 906, 973
MboI	GATC	5 cut(s)	295, 457, 876, 904, 971
MboII	GAAGA	1 cut(s)	1018
MfeI	CAATTG	1 cut(s)	507
MflI	RGATCY	1 cut(s)	457
MhlI	GDGCHC	4 cut(s)	30, 320, 786, 858
MluCI	AATT	8 cut(s)	10, 102, 330, 507, 661, 818, 944, 959
MlyI	GAGTC	1 cut(s)	709
MmeI	TCCRAC	1 cut(s)	394
MroI	TCCGGA	1 cut(s)	898
MseI	TTAA	2 cut(s)	155, 501
MspI	CCGG	2 cut(s)	114, 899
MspR9I	CCNGG	4 cut(s)	143, 711, 749, 813
MunI	CAATTG	1 cut(s)	507
MvaI	CCWGG	4 cut(s)	143, 711, 749, 813
MvnI	CGCG	1 cut(s)	983
MwoI	GCNNNNNNNGC	1 cut(s)	320
NdeII	GATC	5 cut(s)	295, 457, 876, 904, 971
NlaIII	CATG	6 cut(s)	266, 394, 584, 634, 968, 1002
NlaIV	GGNNCC	2 cut(s)	208, 793
NmuCI	GTSAC	1 cut(s)	268
NspI	RCATGY	1 cut(s)	394
PagI	TCATGA	1 cut(s)	262
PceI	AGGCCT	1 cut(s)	989
PfeI	GAWTC	2 cut(s)	126, 424
PkrI	GCNGC	2 cut(s)	524, 579
PleI	GAGTC	1 cut(s)	709
PpsI	GAGTC	1 cut(s)	709
Ppu21I	YACGTR	1 cut(s)	596
Psp124BI	GAGCTC	1 cut(s)	858
Psp6I	CCWGG	4 cut(s)	141, 709, 747, 811
PspEI	GGTNACC	1 cut(s)	109
PspFI	CCCAGC	2 cut(s)	319, 949
PspGI	CCWGG	4 cut(s)	141, 709, 747, 811
PspN4I	GGNNCC	2 cut(s)	208, 793
PspPI	GGNCC	2 cut(s)	623, 791
PstI	CTGCAG	1 cut(s)	432
PstNI	CAGNNNCTG	1 cut(s)	732
PsuI	RGATCY	1 cut(s)	457
SacI	GAGCTC	1 cut(s)	858
SaqAI	TTAA	2 cut(s)	155, 501
SatI	GCNGC	2 cut(s)	523, 578
Sau3AI	GATC	5 cut(s)	295, 457, 876, 904, 971
Sau96I	GGNCC	2 cut(s)	623, 791
SchI	GAGTC	1 cut(s)	709
ScrFI	CCNGG	4 cut(s)	143, 711, 749, 813
SduI	GDGCHC	4 cut(s)	30, 320, 786, 858
SexAI	ACCWGGT	2 cut(s)	141, 747
SfaNI	GCATC	1 cut(s)	478
SfcI	CTRYAG	1 cut(s)	428
SinI	GGWCC	1 cut(s)	791
SmlI	CTYRAG	1 cut(s)	672
SmoI	CTYRAG	1 cut(s)	672
SnaBI	TACGTA	1 cut(s)	596
Sse9I	AATT	8 cut(s)	10, 102, 330, 507, 661, 818, 944, 959
SseBI	AGGCCT	1 cut(s)	989
SsiI	CCGC	1 cut(s)	70
SspI	AATATT	2 cut(s)	609, 637
SspMI	CTAG	1 cut(s)	909
SstI	GAGCTC	1 cut(s)	858
StuI	AGGCCT	1 cut(s)	989
StyD4I	CCNGG	4 cut(s)	141, 709, 747, 811
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	2 cut(s)	700, 847
TaiI	ACGT	2 cut(s)	375, 598
TaqI	TCGA	3 cut(s)	189, 288, 564
TasI	AATT	8 cut(s)	10, 102, 330, 507, 661, 818, 944, 959
TfiI	GAWTC	2 cut(s)	126, 424
Tru1I	TTAA	2 cut(s)	155, 501
Tru9I	TTAA	2 cut(s)	155, 501
TscAI	CASTG	5 cut(s)	208, 390, 705, 793, 852
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	2 cut(s)	522, 577
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	5 cut(s)	118, 180, 647, 702, 981
TspRI	CASTG	5 cut(s)	208, 390, 705, 793, 852
VpaK11BI	GGWCC	1 cut(s)	791
XapI	RAATTY	3 cut(s)	102, 818, 959
XceI	RCATGY	1 cut(s)	394
XspI	CTAG	1 cut(s)	909

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.