pycom11g10410

Converts the prephenate produced from the shikimate- chorismate pathway into phenylalanine

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Reverse (-)
8821311 .. 8825544
4234 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1215 bp
ATGGCGGCGTCTTCGGTGGAACGATCCGGGATCGCCACAACCCCTTTCCCACGACACGTCGTATCGAAGCGCTTCCCTTCCGATCACTTCCCCAAACCAACTTTGAACTTCGAAATCCGCTCCAGACGCTGTCGTATAGGCCTGACCCTGGCTTCTCTTCGCTCATCAGACGAAAGCACCAGTAACAGAAATTACGGCGGTGGTCACAGAAACCTGGTTGGAGGCGCTATGGAATTGGAGAGCGCCTTGGAGGACTTCCCTTACGACGTCGAATCAAAAGACATGCACACTCTCCCGAGACCTTTGTCTTCGACCCATCTCTCCAATTCGGTCTCTGATGGCTCCCGCCTTCGCGTTGCATATCAGGGGGTTCGTGGAGCATACAGTGAATTAGCTGCGGACAAAGCGTATCCAAATTGCGAAGCAGTGCCTTGTGAACAATTCGATACCGCTTTTGAGGCTGCTGAACGTTGGCTTGTGGACAGAGCAGTCTTACCAATTGAGAATTCATTAGGTGGAAGCATCCATAGAAACTACGACCTTTTACTCAGGCACAGGTTGCATATAGTAGGGGAAGTGAAACTTGCAGTTCGCCATTGCTTACTGGCTAACCATGGTGTTGAAATTGAAGACCTGGAAAGGGTTCTTAGCCATCCACAGGCTCTTGATCAGTGTGAGAACACGTTAATGAAGCTGGGATTGGTCAGAGAAGCAGTGGATGATACTGCTGGTGCAGCAAAGCATGTTGCTTTCCACAAACTGAAAGATACAGGAGCTGTTGCCAGCTCACCTGCTGCGGGCATATATGGTCTGCAAATACTTGCGCAGGATATTCAGGATGATTCTGACAATGTTACTCGGTTTCTCATGCTTGCTAGAGAACCAATTATTCCTGGCACAGATAGGCCATTCAAGACAAGTATAGTCTTCTCACTAGAGGAAGGCCCTGGGGTCCTTTTCAAAGCTCTGGCTGTTTTTGCTTTGCGTCAAATCAATCTTACAAAGATTGAAAGCCGTCCTTTGCGGATGCAGCCCCTGCGAGCGTCTGATGATAGTAACGGTGGATCTCCAAAATACTTTGACTATCTTTTTTATGTGGATTTTGAAGCATCAATGGATGATCAGAATGCACAAAATGCCCTTCGGCATCTCAAGGAGTTTGCAACATTCTTGCGGGTGCTAGGGAGTTACCCGATGGATACAAGCATGACATGA

Protein Analysis

405

Amino Acids

44.76

Weight (kDa)

6.07

Isoelectric Point (pI)

46.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDT PF00800 119 - 294 6e-58 Prephenate dehydratase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 799
AasI GACNNNNNNGTC 1 cut(s) 488
AatII GACGTC 1 cut(s) 270
Acc16I TGCGCA 1 cut(s) 825
Acc36I ACCTGC 1 cut(s) 799
AccBSI CCGCTC 1 cut(s) 120
AccII CGCG 1 cut(s) 354
AciI CCGC 9 cut(s) 5, 118, 198, 346, 398, 450, 797, 1024, 1174
AclI AACGTT 1 cut(s) 469
AclWI GGATC 3 cut(s) 18, 38, 1072
AcsI RAATTY 1 cut(s) 505
AcyI GRCGYC 2 cut(s) 8, 267
AfeI AGCGCT 1 cut(s) 71
AfiI CCNNNNNNNGG 4 cut(s) 148, 640, 658, 797
AflIII ACRYGT 2 cut(s) 55, 681
AgsI TTSAA 7 cut(s) 106, 623, 629, 913, 961, 1010, 1106
AjiI CACGTC 1 cut(s) 58
AjnI CCWGG 5 cut(s) 147, 213, 633, 892, 946
AjuI GAANNNNNNNTTGG 4 cut(s) 490, 522, 683, 715
AluBI AGCT 5 cut(s) 395, 694, 776, 786, 965
AluI AGCT 5 cut(s) 395, 694, 776, 786, 965
Alw26I GTCTC 2 cut(s) 292, 337
AlwI GGATC 3 cut(s) 18, 38, 1072
AlwNI CAGNNNCTG 3 cut(s) 129, 776, 1036
Ama87I CYCGRG 1 cut(s) 295
Aor51HI AGCGCT 1 cut(s) 71
AoxI GGCC 3 cut(s) 139, 905, 943
ApeKI GCWGC 5 cut(s) 395, 461, 734, 794, 1030
ApoI RAATTY 1 cut(s) 505
Asp700I GAANNNNTTC 2 cut(s) 71, 642
AspLEI GCGC 4 cut(s) 72, 227, 245, 826
AspS9I GGNCC 2 cut(s) 944, 952
AsuC2I CCSGG 1 cut(s) 28
AsuHPI GGTGA 1 cut(s) 780
AsuII TTCGAA 1 cut(s) 111
AvaI CYCGRG 1 cut(s) 295
AvaII GGWCC 1 cut(s) 952
BbsI GAAGAC 4 cut(s) 3, 300, 636, 919
BbvI GCAGC 5 cut(s) 382, 448, 746, 781, 1042
BccI CCATC 4 cut(s) 324, 332, 660, 1189
BceAI ACGGC 2 cut(s) 211, 999
BciT130I CCWGG 5 cut(s) 149, 215, 635, 894, 948
BciVI GTATCC 2 cut(s) 420, 1192
BclI TGATCA 2 cut(s) 667, 1120
BcnI CCSGG 1 cut(s) 28
BcoDI GTCTC 2 cut(s) 292, 337
BfaI CTAG 3 cut(s) 876, 935, 1181
BfoI RGCGCY 3 cut(s) 73, 228, 246
BfuAI ACCTGC 1 cut(s) 799
BfuI GTATCC 2 cut(s) 420, 1192
BisI GCNGC 6 cut(s) 6, 396, 462, 735, 795, 1031
BlsI GCNGC 6 cut(s) 7, 397, 463, 736, 796, 1032
Bme1390I CCNGG 6 cut(s) 28, 149, 215, 635, 894, 948
Bme18I GGWCC 1 cut(s) 952
BmeT110I CYCGRG 1 cut(s) 295
BmgBI CACGTC 1 cut(s) 58
BmgT120I GGNCC 2 cut(s) 944, 952
BmiI GGNNCC 2 cut(s) 343, 953
BmrFI CCNGG 6 cut(s) 28, 149, 215, 635, 894, 948
BmsI GCATC 4 cut(s) 531, 1017, 1118, 1156
BoxI GACNNNNGTC 1 cut(s) 304
BpiI GAAGAC 4 cut(s) 3, 300, 636, 919
BpmI CTGGAG 1 cut(s) 106
Bpu14I TTCGAA 1 cut(s) 111
BpuEI CTTGAG 1 cut(s) 1136
BpuMI CCSGG 1 cut(s) 28
BsaHI GRCGYC 2 cut(s) 8, 267
BsaI GGTCTC 2 cut(s) 292, 337
BsaJI CCNNGG 5 cut(s) 147, 246, 613, 946, 947
Bsc4I CCNNNNNNNGG 4 cut(s) 148, 640, 658, 797
Bse1I ACTGG 2 cut(s) 180, 609
Bse3DI GCAATG 1 cut(s) 595
BseBI CCWGG 5 cut(s) 149, 215, 635, 894, 948
BseDI CCNNGG 5 cut(s) 147, 246, 613, 946, 947
BseGI GGATG 6 cut(s) 522, 652, 724, 844, 1032, 1123
BseLI CCNNNNNNNGG 4 cut(s) 148, 640, 658, 797
BseMI GCAATG 1 cut(s) 595
BseMII CTCAG 1 cut(s) 562
BseNI ACTGG 2 cut(s) 180, 609
BseXI GCAGC 5 cut(s) 382, 448, 746, 781, 1042
BseYI CCCAGC 1 cut(s) 694
BsgI GTGCAG 1 cut(s) 753
Bsh1236I CGCG 1 cut(s) 354
BshFI GGCC 3 cut(s) 141, 907, 945
BsiHKCI CYCGRG 1 cut(s) 295
BsiSI CCGG 1 cut(s) 27
BslI CCNNNNNNNGG 4 cut(s) 148, 640, 658, 797
BsmAI GTCTC 2 cut(s) 292, 337
BsmI GAATGC 1 cut(s) 1132
BsnI GGCC 3 cut(s) 141, 907, 945
Bso31I GGTCTC 2 cut(s) 292, 337
BsoBI CYCGRG 1 cut(s) 295
Bsp119I TTCGAA 1 cut(s) 111
Bsp143I GATC 6 cut(s) 23, 30, 82, 667, 1064, 1120
Bsp19I CCATGG 1 cut(s) 613
BspACI CCGC 9 cut(s) 5, 118, 198, 346, 398, 450, 797, 1024, 1174
BspANI GGCC 3 cut(s) 141, 907, 945
BspCNI CTCAG 1 cut(s) 561
BspFNI CGCG 1 cut(s) 354
BspLI GGNNCC 2 cut(s) 343, 953
BspMI ACCTGC 1 cut(s) 799
BspPI GGATC 3 cut(s) 18, 38, 1072
BspT104I TTCGAA 1 cut(s) 111
BspTNI GGTCTC 2 cut(s) 292, 337
BsrBI CCGCTC 1 cut(s) 120
BsrDI GCAATG 1 cut(s) 595
BsrI ACTGG 2 cut(s) 180, 609
BssECI CCNNGG 5 cut(s) 147, 246, 613, 946, 947
BssMI GATC 6 cut(s) 23, 30, 82, 667, 1064, 1120
BssNI GRCGYC 2 cut(s) 8, 267
BssT1I CCWWGG 2 cut(s) 246, 613
Bst2UI CCWGG 5 cut(s) 149, 215, 635, 894, 948
Bst4CI ACNGT 2 cut(s) 386, 1061
Bst6I CTCTTC 1 cut(s) 162
BstACI GRCGYC 2 cut(s) 8, 267
BstAPI GCANNNNNTGC 3 cut(s) 559, 1036, 1136
BstBI TTCGAA 1 cut(s) 111
BstC8I GCNNGC 4 cut(s) 784, 799, 873, 1041
BstDEI CTNAG 2 cut(s) 548, 647
BstDSI CCRYGG 1 cut(s) 613
BstF5I GGATG 6 cut(s) 522, 652, 724, 844, 1032, 1123
BstFNI CGCG 1 cut(s) 354
BstH2I RGCGCY 3 cut(s) 73, 228, 246
BstHHI GCGC 4 cut(s) 72, 227, 245, 826
BstKTI GATC 6 cut(s) 26, 33, 85, 670, 1067, 1123
BstMAI GTCTC 2 cut(s) 292, 337
BstMBI GATC 6 cut(s) 23, 30, 82, 667, 1064, 1120
BstMWI GCNNNNNNNGC 9 cut(s) 126, 404, 458, 559, 734, 977, 1030, 1036, 1136
BstNI CCWGG 5 cut(s) 149, 215, 635, 894, 948
BstNSI RCATGY 2 cut(s) 286, 746
BstPAI GACNNNNGTC 1 cut(s) 304
BstSCI CCNGG 6 cut(s) 26, 147, 213, 633, 892, 946
BstUI CGCG 1 cut(s) 354
BstV1I GCAGC 5 cut(s) 382, 448, 746, 781, 1042
BstV2I GAAGAC 4 cut(s) 3, 300, 636, 919
BstX2I RGATCY 1 cut(s) 1064
BstYI RGATCY 1 cut(s) 1064
BsuI GTATCC 2 cut(s) 420, 1192
BsuRI GGCC 3 cut(s) 141, 907, 945
BtgI CCRYGG 1 cut(s) 613
BtrI CACGTC 1 cut(s) 58
BtsCI GGATG 6 cut(s) 522, 652, 724, 844, 1032, 1123
BtsI GCAGTG 2 cut(s) 432, 720
BtsIMutI CAGTG 4 cut(s) 391, 432, 677, 720
BveI ACCTGC 1 cut(s) 799
Cac8I GCNNGC 4 cut(s) 784, 799, 873, 1041
CaiI CAGNNNCTG 3 cut(s) 129, 776, 1036
CfoI GCGC 4 cut(s) 72, 227, 245, 826
Cfr13I GGNCC 2 cut(s) 944, 952
CseI GACGC 3 cut(s) 135, 974, 1032
CsiI ACCWGGT 1 cut(s) 213
CviAII CATG 6 cut(s) 283, 614, 743, 868, 1207, 1212
DdeI CTNAG 2 cut(s) 548, 647
DpnI GATC 6 cut(s) 25, 32, 84, 669, 1066, 1122
DpnII GATC 6 cut(s) 23, 30, 82, 667, 1064, 1120
DrdI GACNNNNNNGTC 1 cut(s) 488
DseDI GACNNNNNNGTC 1 cut(s) 488
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
Eco130I CCWWGG 2 cut(s) 246, 613
Eco147I AGGCCT 1 cut(s) 141
Eco31I GGTCTC 2 cut(s) 292, 337
Eco47I GGWCC 1 cut(s) 952
Eco47III AGCGCT 1 cut(s) 71
Eco88I CYCGRG 1 cut(s) 295
EcoO109I RGGNCCY 2 cut(s) 944, 952
EcoRI GAATTC 1 cut(s) 505
EcoRII CCWGG 5 cut(s) 147, 213, 633, 892, 946
EcoT14I CCWWGG 2 cut(s) 246, 613
ErhI CCWWGG 2 cut(s) 246, 613
FaeI CATG 6 cut(s) 286, 617, 746, 871, 1210, 1215
FalI AAGNNNNNCTT 4 cut(s) 567, 599, 1003, 1035
FatI CATG 6 cut(s) 282, 613, 742, 867, 1206, 1211
FauI CCCGC 3 cut(s) 353, 790, 1167
FbaI TGATCA 2 cut(s) 667, 1120
Fnu4HI GCNGC 6 cut(s) 6, 396, 462, 735, 795, 1031
FokI GGATG 6 cut(s) 509, 639, 731, 851, 1039, 1130
Fsp4HI GCNGC 6 cut(s) 6, 396, 462, 735, 795, 1031
FspBI CTAG 3 cut(s) 876, 935, 1181
FspI TGCGCA 1 cut(s) 825
GlaI GCGC 4 cut(s) 71, 226, 244, 825
GluI GCNGC 6 cut(s) 6, 396, 462, 735, 795, 1031
GsaI CCCAGC 1 cut(s) 698
GsuI CTGGAG 1 cut(s) 106
HaeII RGCGCY 3 cut(s) 73, 228, 246
HaeIII GGCC 3 cut(s) 141, 907, 945
HapII CCGG 1 cut(s) 27
HgaI GACGC 3 cut(s) 135, 974, 1032
HhaI GCGC 4 cut(s) 72, 227, 245, 826
Hin1I GRCGYC 2 cut(s) 8, 267
Hin1II CATG 6 cut(s) 286, 617, 746, 871, 1210, 1215
Hin6I GCGC 4 cut(s) 70, 225, 243, 824
HinP1I GCGC 4 cut(s) 70, 225, 243, 824
HinfI GANTC 2 cut(s) 272, 842
HpaII CCGG 1 cut(s) 27
HphI GGTGA 1 cut(s) 780
Hpy166II GTNNAC 2 cut(s) 437, 481
Hpy188I TCNGA 7 cut(s) 82, 169, 337, 707, 847, 1048, 1125
Hpy188III TCNNGA 5 cut(s) 123, 295, 665, 836, 913
Hpy8I GTNNAC 2 cut(s) 437, 481
Hpy99I CGWCG 3 cut(s) 62, 269, 272
HpyAV CCTTC 4 cut(s) 87, 359, 935, 1151
HpyCH4III ACNGT 2 cut(s) 386, 1061
HpyCH4IV ACGT 4 cut(s) 57, 267, 469, 683
HpyCH4V TGCA 9 cut(s) 286, 359, 562, 587, 734, 814, 1030, 1130, 1163
HpyF10VI GCNNNNNNNGC 9 cut(s) 126, 404, 458, 559, 734, 977, 1030, 1036, 1136
HpyF3I CTNAG 2 cut(s) 548, 647
HpySE526I ACGT 4 cut(s) 57, 267, 469, 683
Hsp92I GRCGYC 2 cut(s) 8, 267
Hsp92II CATG 6 cut(s) 286, 617, 746, 871, 1210, 1215
HspAI GCGC 4 cut(s) 70, 225, 243, 824
Ksp22I TGATCA 2 cut(s) 667, 1120
Kzo9I GATC 6 cut(s) 23, 30, 82, 667, 1064, 1120
LmnI GCTCC 4 cut(s) 125, 347, 377, 773
Lsp1109I GCAGC 5 cut(s) 382, 448, 746, 781, 1042
LweI GCATC 4 cut(s) 531, 1017, 1118, 1156
MabI ACCWGGT 1 cut(s) 213
MaeI CTAG 3 cut(s) 876, 935, 1181
MaeII ACGT 4 cut(s) 57, 267, 469, 683
MaeIII GTNAC 5 cut(s) 182, 203, 853, 1055, 1187
MalI GATC 6 cut(s) 25, 32, 84, 669, 1066, 1122
MbiI CCGCTC 1 cut(s) 120
MboI GATC 6 cut(s) 23, 30, 82, 667, 1064, 1120
MboII GAAGA 5 cut(s) 3, 149, 300, 641, 919
MfeI CAATTG 1 cut(s) 498
MflI RGATCY 1 cut(s) 1064
MmeI TCCRAC 1 cut(s) 199
MnlI CCTC 4 cut(s) 215, 244, 451, 931
MroXI GAANNNNTTC 2 cut(s) 71, 642
MseI TTAA 1 cut(s) 686
MslI CAYNNNNRTG 1 cut(s) 686
MspI CCGG 1 cut(s) 27
MspR9I CCNGG 6 cut(s) 28, 149, 215, 635, 894, 948
MunI CAATTG 1 cut(s) 498
Mva1269I GAATGC 1 cut(s) 1132
MvaI CCWGG 5 cut(s) 149, 215, 635, 894, 948
MvnI CGCG 1 cut(s) 354
MwoI GCNNNNNNNGC 9 cut(s) 126, 404, 458, 559, 734, 977, 1030, 1036, 1136
NciI CCSGG 1 cut(s) 28
NcoI CCATGG 1 cut(s) 613
NdeII GATC 6 cut(s) 23, 30, 82, 667, 1064, 1120
NlaIII CATG 6 cut(s) 286, 617, 746, 871, 1210, 1215
NlaIV GGNNCC 2 cut(s) 343, 953
NmuCI GTSAC 1 cut(s) 203
NsbI TGCGCA 1 cut(s) 825
NspI RCATGY 2 cut(s) 286, 746
NspV TTCGAA 1 cut(s) 111
PaqCI CACCTGC 1 cut(s) 799
PasI CCCWGGG 1 cut(s) 947
PceI AGGCCT 1 cut(s) 141
PctI GAATGC 1 cut(s) 1132
PdmI GAANNNNTTC 2 cut(s) 71, 642
PfeI GAWTC 2 cut(s) 272, 842
PflFI GACNNNGTC 1 cut(s) 129
PfoI TCCNGGA 1 cut(s) 26
PkrI GCNGC 6 cut(s) 7, 397, 463, 736, 796, 1032
PpuMI RGGWCCY 1 cut(s) 952
PshAI GACNNNNGTC 1 cut(s) 304
Psp1406I AACGTT 1 cut(s) 469
Psp5II RGGWCCY 1 cut(s) 952
Psp6I CCWGG 5 cut(s) 147, 213, 633, 892, 946
PspFI CCCAGC 1 cut(s) 694
PspGI CCWGG 5 cut(s) 147, 213, 633, 892, 946
PspN4I GGNNCC 2 cut(s) 343, 953
PspPI GGNCC 2 cut(s) 944, 952
PspPPI RGGWCCY 1 cut(s) 952
PstNI CAGNNNCTG 3 cut(s) 129, 776, 1036
PsuI RGATCY 1 cut(s) 1064
PsyI GACNNNGTC 1 cut(s) 129
RseI CAYNNNNRTG 1 cut(s) 686
SaqAI TTAA 1 cut(s) 686
SatI GCNGC 6 cut(s) 6, 396, 462, 735, 795, 1031
Sau3AI GATC 6 cut(s) 23, 30, 82, 667, 1064, 1120
Sau96I GGNCC 2 cut(s) 944, 952
ScrFI CCNGG 6 cut(s) 28, 149, 215, 635, 894, 948
SexAI ACCWGGT 1 cut(s) 213
SfaNI GCATC 4 cut(s) 531, 1017, 1118, 1156
SfuI TTCGAA 1 cut(s) 111
SinI GGWCC 1 cut(s) 952
SmiMI CAYNNNNRTG 1 cut(s) 686
SmlI CTYRAG 1 cut(s) 1151
SmoI CTYRAG 1 cut(s) 1151
SseBI AGGCCT 1 cut(s) 141
SsiI CCGC 9 cut(s) 5, 118, 198, 346, 398, 450, 797, 1024, 1174
SspMI CTAG 3 cut(s) 876, 935, 1181
StuI AGGCCT 1 cut(s) 141
StyD4I CCNGG 6 cut(s) 26, 147, 213, 633, 892, 946
StyI CCWWGG 2 cut(s) 246, 613
TaaI ACNGT 2 cut(s) 386, 1061
TaiI ACGT 4 cut(s) 60, 270, 472, 686
TaqI TCGA 5 cut(s) 65, 111, 270, 311, 444
TaqII GACCGA 1 cut(s) 319
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 2 cut(s) 272, 842
Tru1I TTAA 1 cut(s) 686
Tru9I TTAA 1 cut(s) 686
TscAI CASTG 4 cut(s) 391, 432, 677, 720
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 5 cut(s) 395, 461, 734, 794, 1030
Tsp45I GTSAC 1 cut(s) 203
TspDTI ATGAA 2 cut(s) 498, 704
TspRI CASTG 4 cut(s) 391, 432, 677, 720
Tth111I GACNNNGTC 1 cut(s) 129
VpaK11BI GGWCC 1 cut(s) 952
XapI RAATTY 1 cut(s) 505
XceI RCATGY 2 cut(s) 286, 746
XmnI GAANNNNTTC 2 cut(s) 71, 642
XspI CTAG 3 cut(s) 876, 935, 1181
ZraI GACGTC 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.