Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0010999

Physical Location & Seq

Genomic Coordinates Reverse (-)

9500795 .. 9504098

Gene Structure 3304 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGCCCTCGTCGGCGTGCTTGCTCTTCAGGGGTCTTTCAACGAACACATAGCAGCTCTGAGAAGGCTTGGGGTGAAGGGCGTAGAGATAAGGAAGCCGGAGCAGCTTGAATCTGTGGCCTCCCTTATAATCCCTGGAGGCGAGAGCACCACTATGGCTAAGCTCGCTGAGTACCACAACCTGTTTCCTGCTTTGCGCGAGTTTGTTAAAATGGGGAAGCCTGTTTGGGGGACCTGTGCAGGTCTTATTTTCTTAGCAAACAAAGCTACAGGACAGAAAATAGGAGGACAGGAACTTGTTGGCGGCCTAGATTGCACTGTTCACAGAAACTTCTTTGGCAGTCAGATTCAGAGCTTTGAGGCTGAACTTGCAGTACCAGAGCTTGCTTCTACGGAAGGTGGTCCTGAAGTATTTCGTGGAGTTTTCATCCGTGCTCCTGCTATCCTTGATGTAGGACCAGAAGTTGAAGTGCTGGCTGATTATCCTGTCCCGTCCAATAAGGTGTTGGATTCAAATTCCACAGTTGAAGCTCAAGAGGAGAATCCTGTGTCTGAGAATAAAGTGATTGTAGCAGTTCGACAAAAGAATTTGTTGGCGACTGCCTTCCATCCTGAATTGACAGCAGACACTCGATGGCATAGTTACTTCTTGAAGATGTCAACTGAAACCGGAGAAGGAGCCTCAAGTAGCATCGTTGCTGTTGGAGCTGATCTAAGTTTAGACCAACAAACAAAGATTGACCTCCCTATATTTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004359 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008614 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0032991 GO:0034641 GO:0042364 GO:0042816 GO:0042819 GO:0042822 GO:0042823 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046184 GO:0046483 GO:0046982 GO:0046983 GO:0051186 GO:0051188 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1903600

KEGG Pathways

Metabolic & Signaling

ko00750 map00750

Pfam Domains

Protein Families

SNO

Protein Analysis

253

Amino Acids

27.09

Weight (kDa)

5.11

Isoelectric Point (pI)

49.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNO	PF01174	6 - 220	5.3e-51	SNO glutamine amidotransferase family
GATase_3	PF07685	16 - 107	1.4e-08	CobB/CobQ-like glutamine amidotransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60540
fragaria_vesca	FvH4_3g32570 FvH4_3g32570 FvH4_3g32570 FvH4_3g32570 FvH4_3g32570 FvH4_3g32570
malus_domestica	MD03G1113000.v1.1 MD11G1133800.v1.1
prunus_persica	Prupe.6G100100_v2.0.a1
pyrus_communis	pycom11g11030
rosa_chinensis	RchiOBHm_Chr5g0059641
rosa_laevigata	RLG00000035317
rosa_multiflora	Rmu_sc0001146.1_g000002
rosa_roxburghii	Rroxscaffold_1G00020970
rosa_rugosa	Rorug05G0323800
rosa_samantha	Rh5AG389100 Rh5BG400800 Rh5DG417200
rosa_wichuraiana	Rw5G036630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	128
Acc36I	ACCTGC	1 cut(s)	230
AccII	CGCG	1 cut(s)	198
AciI	CCGC	1 cut(s)	303
AcsI	RAATTY	2 cut(s)	514, 586
AcuI	CTGAAG	2 cut(s)	11, 426
AfaI	GTAC	2 cut(s)	173, 375
AfiI	CCNNNNNNNGG	1 cut(s)	227
AgsI	TTSAA	7 cut(s)	40, 110, 467, 513, 527, 652, 755
AjnI	CCWGG	1 cut(s)	133
AluBI	AGCT	8 cut(s)	56, 106, 163, 266, 354, 382, 530, 707
AluI	AGCT	8 cut(s)	56, 106, 163, 266, 354, 382, 530, 707
Alw21I	GWGCWC	2 cut(s)	149, 436
AoxI	GGCC	3 cut(s)	3, 117, 304
ApeKI	GCWGC	2 cut(s)	53, 103
ApoI	RAATTY	2 cut(s)	514, 586
Asp700I	GAANNNNTTC	1 cut(s)	411
AspLEI	GCGC	1 cut(s)	198
AspS9I	GGNCC	4 cut(s)	4, 231, 401, 455
AsuHPI	GGTGA	1 cut(s)	85
AvaII	GGWCC	3 cut(s)	231, 401, 455
Bbv12I	GWGCWC	2 cut(s)	149, 436
BbvI	GCAGC	2 cut(s)	65, 115
BccI	CCATC	2 cut(s)	615, 627
BciT130I	CCWGG	1 cut(s)	135
BfaI	CTAG	1 cut(s)	308
BfmI	CTRYAG	1 cut(s)	267
BfuAI	ACCTGC	1 cut(s)	230
BisI	GCNGC	3 cut(s)	54, 104, 304
BlpI	GCTNAGC	1 cut(s)	159
BlsI	GCNGC	3 cut(s)	55, 105, 305
Bme1390I	CCNGG	1 cut(s)	135
Bme18I	GGWCC	3 cut(s)	231, 401, 455
BmgT120I	GGNCC	4 cut(s)	4, 231, 401, 455
BmiI	GGNNCC	2 cut(s)	232, 679
BmrFI	CCNGG	1 cut(s)	135
BmsI	GCATC	1 cut(s)	699
BpmI	CTGGAG	1 cut(s)	156
Bpu1102I	GCTNAGC	1 cut(s)	159
BpuEI	CTTGAG	2 cut(s)	516, 667
BsaJI	CCNNGG	1 cut(s)	133
BsaWI	WCCGGW	1 cut(s)	668
Bsc4I	CCNNNNNNNGG	1 cut(s)	227
BseBI	CCWGG	1 cut(s)	135
BseDI	CCNNGG	1 cut(s)	133
BseGI	GGATG	2 cut(s)	426, 607
BseLI	CCNNNNNNNGG	1 cut(s)	227
BseMII	CTCAG	3 cut(s)	50, 159, 543
BseRI	GAGGAG	1 cut(s)	551
BseXI	GCAGC	2 cut(s)	65, 115
BsgI	GTGCAG	1 cut(s)	258
Bsh1236I	CGCG	1 cut(s)	198
BshFI	GGCC	3 cut(s)	5, 119, 306
BsiHKAI	GWGCWC	2 cut(s)	149, 436
BsiSI	CCGG	2 cut(s)	98, 669
BslFI	GGGAC	2 cut(s)	244, 473
BslI	CCNNNNNNNGG	1 cut(s)	227
BsmFI	GGGAC	2 cut(s)	244, 473
BsnI	GGCC	3 cut(s)	5, 119, 306
Bsp1286I	GDGCHC	2 cut(s)	149, 436
Bsp143I	GATC	1 cut(s)	709
Bsp1720I	GCTNAGC	1 cut(s)	159
BspACI	CCGC	1 cut(s)	303
BspANI	GGCC	3 cut(s)	5, 119, 306
BspCNI	CTCAG	3 cut(s)	51, 160, 544
BspFNI	CGCG	1 cut(s)	198
BspLI	GGNNCC	2 cut(s)	232, 679
BspMI	ACCTGC	1 cut(s)	230
BspQI	GCTCTTC	1 cut(s)	30
BssECI	CCNNGG	1 cut(s)	133
BssMI	GATC	1 cut(s)	709
Bst2UI	CCWGG	1 cut(s)	135
Bst4CI	ACNGT	2 cut(s)	319, 523
Bst6I	CTCTTC	1 cut(s)	30
BstC8I	GCNNGC	5 cut(s)	17, 21, 165, 384, 474
BstDEI	CTNAG	6 cut(s)	59, 159, 168, 253, 552, 713
BstF5I	GGATG	2 cut(s)	426, 607
BstFNI	CGCG	1 cut(s)	198
BstHHI	GCGC	1 cut(s)	198
BstKTI	GATC	1 cut(s)	712
BstMBI	GATC	1 cut(s)	709
BstMWI	GCNNNNNNNGC	6 cut(s)	103, 164, 263, 312, 368, 704
BstNI	CCWGG	1 cut(s)	135
BstSCI	CCNGG	1 cut(s)	133
BstSFI	CTRYAG	1 cut(s)	267
BstUI	CGCG	1 cut(s)	198
BstV1I	GCAGC	2 cut(s)	65, 115
BsuRI	GGCC	3 cut(s)	5, 119, 306
BtsCI	GGATG	2 cut(s)	426, 607
BtsIMutI	CAGTG	1 cut(s)	315
BveI	ACCTGC	1 cut(s)	230
Cac8I	GCNNGC	5 cut(s)	17, 21, 165, 384, 474
CfoI	GCGC	1 cut(s)	198
Cfr13I	GGNCC	4 cut(s)	4, 231, 401, 455
Csp6I	GTAC	2 cut(s)	172, 374
CviQI	GTAC	2 cut(s)	172, 374
DdeI	CTNAG	6 cut(s)	59, 159, 168, 253, 552, 713
DpnI	GATC	1 cut(s)	711
DpnII	GATC	1 cut(s)	709
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Eco47I	GGWCC	3 cut(s)	231, 401, 455
Eco57I	CTGAAG	2 cut(s)	11, 426
EcoO109I	RGGNCCY	1 cut(s)	231
EcoRII	CCWGG	1 cut(s)	133
FaiI	YATR	5 cut(s)	50, 128, 155, 639, 749
FaqI	GGGAC	2 cut(s)	244, 473
Fnu4HI	GCNGC	3 cut(s)	54, 104, 304
FokI	GGATG	2 cut(s)	413, 594
Fsp4HI	GCNGC	3 cut(s)	54, 104, 304
FspBI	CTAG	1 cut(s)	308
GlaI	GCGC	1 cut(s)	197
GluI	GCNGC	3 cut(s)	54, 104, 304
GsuI	CTGGAG	1 cut(s)	156
HaeIII	GGCC	3 cut(s)	5, 119, 306
HapII	CCGG	2 cut(s)	98, 669
HhaI	GCGC	1 cut(s)	198
Hin6I	GCGC	1 cut(s)	196
HinP1I	GCGC	1 cut(s)	196
HincII	GTYRAC	1 cut(s)	660
HindII	GTYRAC	1 cut(s)	660
HinfI	GANTC	4 cut(s)	110, 346, 509, 541
HpaII	CCGG	2 cut(s)	98, 669
HphI	GGTGA	1 cut(s)	85
Hpy166II	GTNNAC	2 cut(s)	322, 660
Hpy188I	TCNGA	4 cut(s)	60, 345, 351, 553
Hpy188III	TCNNGA	4 cut(s)	404, 533, 611, 649
Hpy8I	GTNNAC	2 cut(s)	322, 660
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	5 cut(s)	57, 70, 389, 613, 668
HpyCH4III	ACNGT	2 cut(s)	319, 523
HpyCH4V	TGCA	3 cut(s)	239, 315, 371
HpyF10VI	GCNNNNNNNGC	6 cut(s)	103, 164, 263, 312, 368, 704
HpyF3I	CTNAG	6 cut(s)	59, 159, 168, 253, 552, 713
HspAI	GCGC	1 cut(s)	196
Kzo9I	GATC	1 cut(s)	709
LguI	GCTCTTC	1 cut(s)	30
LmnI	GCTCC	4 cut(s)	100, 439, 677, 704
Lsp1109I	GCAGC	2 cut(s)	65, 115
LweI	GCATC	1 cut(s)	699
MaeI	CTAG	1 cut(s)	308
MaeIII	GTNAC	1 cut(s)	641
MalI	GATC	1 cut(s)	711
MboI	GATC	1 cut(s)	709
MboII	GAAGA	2 cut(s)	17, 664
MhlI	GDGCHC	2 cut(s)	149, 436
MluCI	AATT	3 cut(s)	514, 586, 614
MmeI	TCCRAC	2 cut(s)	486, 682
MnlI	CCTC	8 cut(s)	17, 130, 131, 278, 352, 529, 691, 752
MroXI	GAANNNNTTC	1 cut(s)	411
MseI	TTAA	1 cut(s)	207
MslI	CAYNNNNRTG	1 cut(s)	152
MspI	CCGG	2 cut(s)	98, 669
MspR9I	CCNGG	1 cut(s)	135
MvaI	CCWGG	1 cut(s)	135
MvnI	CGCG	1 cut(s)	198
MwoI	GCNNNNNNNGC	6 cut(s)	103, 164, 263, 312, 368, 704
NdeII	GATC	1 cut(s)	709
NlaIV	GGNNCC	2 cut(s)	232, 679
PciSI	GCTCTTC	1 cut(s)	30
PdmI	GAANNNNTTC	1 cut(s)	411
PfeI	GAWTC	4 cut(s)	110, 346, 509, 541
PkrI	GCNGC	3 cut(s)	55, 105, 305
PpuMI	RGGWCCY	1 cut(s)	231
PsiI	TTATAA	1 cut(s)	128
Psp5II	RGGWCCY	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	133
PspGI	CCWGG	1 cut(s)	133
PspN4I	GGNNCC	2 cut(s)	232, 679
PspPI	GGNCC	4 cut(s)	4, 231, 401, 455
PspPPI	RGGWCCY	1 cut(s)	231
PsrI	GAACNNNNNNTAC	2 cut(s)	357, 389
RsaI	GTAC	2 cut(s)	173, 375
RsaNI	GTAC	2 cut(s)	172, 374
RseI	CAYNNNNRTG	1 cut(s)	152
SapI	GCTCTTC	1 cut(s)	30
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	3 cut(s)	54, 104, 304
Sau3AI	GATC	1 cut(s)	709
Sau96I	GGNCC	4 cut(s)	4, 231, 401, 455
ScrFI	CCNGG	1 cut(s)	135
SduI	GDGCHC	2 cut(s)	149, 436
SfaNI	GCATC	1 cut(s)	699
SfcI	CTRYAG	1 cut(s)	267
SinI	GGWCC	3 cut(s)	231, 401, 455
SmiMI	CAYNNNNRTG	1 cut(s)	152
SmlI	CTYRAG	2 cut(s)	531, 682
SmoI	CTYRAG	2 cut(s)	531, 682
Sse9I	AATT	3 cut(s)	514, 586, 614
SsiI	CCGC	1 cut(s)	303
SspMI	CTAG	1 cut(s)	308
StyD4I	CCNGG	1 cut(s)	133
TaaI	ACNGT	2 cut(s)	319, 523
TaqI	TCGA	2 cut(s)	577, 631
TasI	AATT	3 cut(s)	514, 586, 614
TauI	GCSGC	1 cut(s)	306
TfiI	GAWTC	4 cut(s)	110, 346, 509, 541
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	1 cut(s)	322
TseI	GCWGC	2 cut(s)	53, 103
TspDTI	ATGAA	1 cut(s)	415
TspGWI	ACGGA	2 cut(s)	407, 419
TspRI	CASTG	1 cut(s)	322
VpaK11BI	GGWCC	3 cut(s)	231, 401, 455
XapI	RAATTY	2 cut(s)	514, 586
XcmI	CCANNNNNNNNNTGG	1 cut(s)	502
XmnI	GAANNNNTTC	1 cut(s)	411
XspI	CTAG	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.