pycom11g12450

ATP10 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0010232
Physical Location & Seq
Forward (+)
11365361 .. 11368362
3002 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 804 bp
ATGAGCCGATTCAGCCGAGCTTCCATATTTGCTTCCCAAATCTTGAGGCCCATTGAGAGCAAGAAGCAGCATCTTCTTCCAGCTTCCCAGCATTTCTTAGTTCAAAGAAGCTCCAATCGTTTCTTCGACATTTACAAGCTTGGAAACAAAGCAGCTATAGAGAAAGAGCGTGCCCGGCTTGCAGATGAGTTGAATAGGGGATATTTTGCTGATATGTCAGAGCTTGAAAAACATGGTGGGAAGATTTCTGTGGCAAATAAAACCATAGTTCCTGCAACTGCAGCGGTAAAGTTTCCTGACTTAGAAGTTAACTACTCTGATGGAAAAATATTAAAGCTTCCCGTTAGCTCCAATGGGAATGGAAATGTCACTGAAGTCAACAAATTGGAAACCCCCAAGGCTTCTTTAGTTTGCCTTTCATTTCGAGCAAGCTCCCAGGGAATGATTAATTCTTGGAGCGCCCCTTTTTGTGATGCTTTTAGTGGTTCCAAGGATGTTCAACTATACGAGGTATCATTAATAGACTCATGGTTCTTATGTCGGAGTCCAATTAAGAAGCTTTTGCTCCGGATTATGAGGAAACCAAAGCATGATGAAAGCACTGAACCTAAAAGGCAGATTGTATATTCATTTGGTGACCATTATTACTTCAGAAAAGAACTTAAAGTACTGAACCTTCTGACCGGGTATATATTCCTGCTCGATAAATTTGGTAGAATAAGATGGCAAGGCACTGGATTGGCTACGGAAGAGGAGTCGTCATCCCTTCTTTCGTGCACGAAACTGCTCTTGGAAGAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ATP-synt_10

Protein Analysis

268

Amino Acids

30.27

Weight (kDa)

9.45

Isoelectric Point (pI)

51.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_10 PF05176 12 - 263 4.8e-36 ATP10 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010232)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08220 AT1G08220
fragaria_vesca FvH4_3g30230 FvH4_3g30230 FvH4_3g30230
malus_domestica MD03G1130500.v1.1 MD11G1152100.v1.1
prunus_persica Prupe.6G115300_v2.0.a1 Prupe.6G115300_v2.0.a1
pyrus_communis pycom11g12450
rosa_chinensis RchiOBHm_Chr5g0056101
rosa_laevigata RLG00000035048
rosa_multiflora Rmu_sc0004174.1_g000010
rosa_roxburghii Rroxscaffold_1G00024200
rosa_rugosa Rorug05G0297500
rosa_samantha Rh5AG368400 Rh5BG379100 Rh5CG402300 Rh5DG391800
rosa_wichuraiana Rw0G004490 Rw5G034590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 567
AciI CCGC 1 cut(s) 284
AcsI RAATTY 1 cut(s) 707
AcuI CTGAAG 2 cut(s) 393, 634
AfaI GTAC 1 cut(s) 669
AgsI TTSAA 4 cut(s) 104, 193, 227, 500
AjnI CCWGG 1 cut(s) 435
AjuI GAANNNNNNNTTGG 3 cut(s) 107, 139, 773
Alw21I GWGCWC 1 cut(s) 779
Alw44I GTGCAC 1 cut(s) 775
Aor13HI TCCGGA 1 cut(s) 567
AoxI GGCC 1 cut(s) 47
ApaLI GTGCAC 1 cut(s) 775
ApeKI GCWGC 3 cut(s) 67, 152, 281
ApoI RAATTY 1 cut(s) 707
AseI ATTAAT 2 cut(s) 447, 518
AspLEI GCGC 1 cut(s) 461
AspS9I GGNCC 1 cut(s) 48
AsuC2I CCSGG 2 cut(s) 175, 685
AsuHPI GGTGA 1 cut(s) 647
BaeGI GKGCMC 2 cut(s) 175, 779
BarI GAAGNNNNNNTAC 2 cut(s) 660, 692
Bbv12I GWGCWC 1 cut(s) 779
BbvI GCAGC 3 cut(s) 79, 164, 293
BccI CCATC 2 cut(s) 314, 717
BciT130I CCWGG 1 cut(s) 437
BcnI CCSGG 2 cut(s) 175, 685
BfmI CTRYAG 2 cut(s) 156, 279
BfoI RGCGCY 1 cut(s) 462
BisI GCNGC 3 cut(s) 68, 153, 282
BlsI GCNGC 3 cut(s) 69, 154, 283
BmcAI AGTACT 1 cut(s) 669
Bme1390I CCNGG 3 cut(s) 175, 437, 685
BmgT120I GGNCC 1 cut(s) 48
BmiI GGNNCC 1 cut(s) 487
BmrFI CCNGG 3 cut(s) 175, 437, 685
BmsI GCATC 2 cut(s) 79, 463
BpuEI CTTGAG 1 cut(s) 64
BpuMI CCSGG 2 cut(s) 175, 685
BsaJI CCNNGG 4 cut(s) 396, 435, 436, 489
BsaWI WCCGGW 1 cut(s) 567
Bse1I ACTGG 1 cut(s) 739
BseAI TCCGGA 1 cut(s) 567
BseBI CCWGG 1 cut(s) 437
BseDI CCNNGG 4 cut(s) 396, 435, 436, 489
BseGI GGATG 2 cut(s) 499, 761
BseNI ACTGG 1 cut(s) 739
BseRI GAGGAG 1 cut(s) 767
BseSI GKGCMC 2 cut(s) 175, 779
BseXI GCAGC 3 cut(s) 79, 164, 293
BseYI CCCAGC 1 cut(s) 87
BshFI GGCC 1 cut(s) 49
BsiHKAI GWGCWC 1 cut(s) 779
BsiSI CCGG 3 cut(s) 175, 568, 684
BsnI GGCC 1 cut(s) 49
Bsp1286I GDGCHC 2 cut(s) 175, 779
Bsp13I TCCGGA 1 cut(s) 567
BspACI CCGC 1 cut(s) 284
BspANI GGCC 1 cut(s) 49
BspEI TCCGGA 1 cut(s) 567
BspLI GGNNCC 1 cut(s) 487
BspMAI CTGCAG 1 cut(s) 283
BsrI ACTGG 1 cut(s) 739
BssECI CCNNGG 4 cut(s) 396, 435, 436, 489
BssT1I CCWWGG 2 cut(s) 396, 489
Bst2UI CCWGG 1 cut(s) 437
Bst6I CTCTTC 2 cut(s) 744, 789
BstC8I GCNNGC 3 cut(s) 171, 180, 430
BstDEI CTNAG 2 cut(s) 97, 301
BstEII GGTNACC 1 cut(s) 635
BstF5I GGATG 2 cut(s) 499, 761
BstH2I RGCGCY 1 cut(s) 462
BstHHI GCGC 1 cut(s) 461
BstMWI GCNNNNNNNGC 4 cut(s) 12, 175, 179, 281
BstNI CCWGG 1 cut(s) 437
BstPI GGTNACC 1 cut(s) 635
BstSCI CCNGG 3 cut(s) 173, 435, 683
BstSFI CTRYAG 2 cut(s) 156, 279
BstSLI GKGCMC 2 cut(s) 175, 779
BstV1I GCAGC 3 cut(s) 79, 164, 293
BsuRI GGCC 1 cut(s) 49
BtsCI GGATG 2 cut(s) 499, 761
BtsIMutI CAGTG 3 cut(s) 369, 600, 732
Cac8I GCNNGC 3 cut(s) 171, 180, 430
CfoI GCGC 1 cut(s) 461
Cfr13I GGNCC 1 cut(s) 48
Csp6I GTAC 1 cut(s) 668
CviAII CATG 3 cut(s) 233, 528, 590
CviQI GTAC 1 cut(s) 668
DdeI CTNAG 2 cut(s) 97, 301
Eam1104I CTCTTC 2 cut(s) 744, 789
EarI CTCTTC 2 cut(s) 744, 789
Eco130I CCWWGG 2 cut(s) 396, 489
Eco57I CTGAAG 2 cut(s) 393, 634
Eco91I GGTNACC 1 cut(s) 635
EcoO65I GGTNACC 1 cut(s) 635
EcoRII CCWGG 1 cut(s) 435
EcoT14I CCWWGG 2 cut(s) 396, 489
ErhI CCWWGG 2 cut(s) 396, 489
FaeI CATG 3 cut(s) 236, 531, 593
FatI CATG 3 cut(s) 232, 527, 589
Fnu4HI GCNGC 3 cut(s) 68, 153, 282
FokI GGATG 2 cut(s) 506, 748
Fsp4HI GCNGC 3 cut(s) 68, 153, 282
GlaI GCGC 1 cut(s) 460
GluI GCNGC 3 cut(s) 68, 153, 282
GsaI CCCAGC 1 cut(s) 91
HaeII RGCGCY 1 cut(s) 462
HaeIII GGCC 1 cut(s) 49
HapII CCGG 3 cut(s) 175, 568, 684
HhaI GCGC 1 cut(s) 461
Hin1II CATG 3 cut(s) 236, 531, 593
Hin6I GCGC 1 cut(s) 459
HinP1I GCGC 1 cut(s) 459
HincII GTYRAC 2 cut(s) 310, 379
HindII GTYRAC 2 cut(s) 310, 379
HindIII AAGCTT 3 cut(s) 137, 335, 557
HinfI GANTC 4 cut(s) 9, 524, 544, 755
HpaI GTTAAC 1 cut(s) 310
HpaII CCGG 3 cut(s) 175, 568, 684
HphI GGTGA 1 cut(s) 647
Hpy166II GTNNAC 3 cut(s) 310, 379, 777
Hpy188I TCNGA 5 cut(s) 220, 319, 543, 653, 681
Hpy188III TCNNGA 3 cut(s) 43, 296, 568
Hpy8I GTNNAC 3 cut(s) 310, 379, 777
HpyAV CCTTC 2 cut(s) 686, 776
HpyCH4V TGCA 4 cut(s) 182, 275, 281, 777
HpyF10VI GCNNNNNNNGC 4 cut(s) 12, 175, 179, 281
HpyF3I CTNAG 2 cut(s) 97, 301
Hsp92II CATG 3 cut(s) 236, 531, 593
HspAI GCGC 1 cut(s) 459
Kpn2I TCCGGA 1 cut(s) 567
KspAI GTTAAC 1 cut(s) 310
LmnI GCTCC 5 cut(s) 116, 353, 437, 456, 570
Lsp1109I GCAGC 3 cut(s) 79, 164, 293
LweI GCATC 2 cut(s) 79, 463
MaeIII GTNAC 2 cut(s) 367, 635
MboII GAAGA 5 cut(s) 65, 68, 115, 253, 761
MhlI GDGCHC 2 cut(s) 175, 779
MluCI AATT 4 cut(s) 383, 448, 549, 707
MlyI GAGTC 3 cut(s) 518, 553, 764
MmeI TCCRAC 1 cut(s) 521
MnlI CCTC 4 cut(s) 39, 502, 570, 745
MroI TCCGGA 1 cut(s) 567
MseI TTAA 6 cut(s) 309, 332, 447, 518, 552, 663
MspA1I CMGCKG 1 cut(s) 284
MspI CCGG 3 cut(s) 175, 568, 684
MspR9I CCNGG 3 cut(s) 175, 437, 685
MvaI CCWGG 1 cut(s) 437
MwoI GCNNNNNNNGC 4 cut(s) 12, 175, 179, 281
NciI CCSGG 2 cut(s) 175, 685
NlaIII CATG 3 cut(s) 236, 531, 593
NlaIV GGNNCC 1 cut(s) 487
NmeAIII GCCGAG 1 cut(s) 41
NmuCI GTSAC 2 cut(s) 367, 635
PasI CCCWGGG 1 cut(s) 436
PfeI GAWTC 1 cut(s) 9
PkrI GCNGC 3 cut(s) 69, 154, 283
PleI GAGTC 3 cut(s) 518, 552, 763
PpsI GAGTC 3 cut(s) 518, 552, 763
PshBI ATTAAT 2 cut(s) 447, 518
Psp6I CCWGG 1 cut(s) 435
PspEI GGTNACC 1 cut(s) 635
PspFI CCCAGC 1 cut(s) 87
PspGI CCWGG 1 cut(s) 435
PspN4I GGNNCC 1 cut(s) 487
PspPI GGNCC 1 cut(s) 48
PsrI GAACNNNNNNTAC 2 cut(s) 651, 683
PstI CTGCAG 1 cut(s) 283
RsaI GTAC 1 cut(s) 669
RsaNI GTAC 1 cut(s) 668
SaqAI TTAA 6 cut(s) 309, 332, 447, 518, 552, 663
SatI GCNGC 3 cut(s) 68, 153, 282
Sau96I GGNCC 1 cut(s) 48
ScaI AGTACT 1 cut(s) 669
SchI GAGTC 3 cut(s) 518, 553, 764
ScrFI CCNGG 3 cut(s) 175, 437, 685
SduI GDGCHC 2 cut(s) 175, 779
SfaNI GCATC 2 cut(s) 79, 463
SfcI CTRYAG 2 cut(s) 156, 279
SmlI CTYRAG 1 cut(s) 43
SmoI CTYRAG 1 cut(s) 43
Sse9I AATT 4 cut(s) 383, 448, 549, 707
SsiI CCGC 1 cut(s) 284
SspI AATATT 1 cut(s) 330
StyD4I CCNGG 3 cut(s) 173, 435, 683
StyI CCWWGG 2 cut(s) 396, 489
TaqI TCGA 3 cut(s) 126, 424, 702
TasI AATT 4 cut(s) 383, 448, 549, 707
TatI WGTACW 1 cut(s) 667
TfiI GAWTC 1 cut(s) 9
Tru1I TTAA 6 cut(s) 309, 332, 447, 518, 552, 663
Tru9I TTAA 6 cut(s) 309, 332, 447, 518, 552, 663
TscAI CASTG 3 cut(s) 376, 607, 739
TseFI GTSAC 2 cut(s) 367, 635
TseI GCWGC 3 cut(s) 67, 152, 281
Tsp45I GTSAC 2 cut(s) 367, 635
TspDTI ATGAA 3 cut(s) 408, 609, 618
TspGWI ACGGA 1 cut(s) 761
TspRI CASTG 3 cut(s) 376, 607, 739
VneI GTGCAC 1 cut(s) 775
VspI ATTAAT 2 cut(s) 447, 518
XapI RAATTY 1 cut(s) 707
ZrmI AGTACT 1 cut(s) 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.