pycom11g16450

THUMP domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0012337
Physical Location & Seq
Reverse (-)
18020939 .. 18024611
3673 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1158 bp
ATGGCGACGGACAACAAACCCACCAAGTCCAAGAAGGGGAAGCAGCGCTATCTCCCTCACAACAAAGCGGTGAAGAAGAAAGGCGCGTACCCATTACACCCAGGAGTGGAAGGATTCTTCATCACTTGCGATGGCGGAAGGGAACGCCAAGCCTCTCAGGAAGCCATTAACGTTATTGACTCTTTTTATGAAGAGCTAGTCAGTGGAAAGGGTTTGGGATTGAAGCTTTCTGAGGCACCCTGTAAACCTTCAAATAAGAAAATAGTGTTCTCATATTCTGATTCTTCCAGTGGTGAGGGTGATGACGATGATGACGATGAAAGGAAACAAGGAGAGGACAAGGAAGCAGAAGAAGAGGGCGAAGTGGGTGAAGAGAGTAAAGGTGATTCTCGTAGTGATGATGCCAGTCATGATAATGCAACAAGTGAGAAATCAGAACACCAGAAGAAGGATGATGCGTGTGGCGAAAATAAAACTGAGGAAAACACTGAAGACGAGAAAGAGGATATTATAAGTAGGGAAACTTGTGCAAATGAAGCTGAGGAGCCACCAGCAAAGAAACAATGTCTAGGAACAGATTCATCAAAATTTGCAATCCCATACAAAGTGGAAGAGAAGTCCATCGATAAGCTAATTGAAGCTGAGCTTCAAGAACTGGGAGATAAGAACAAGAGACGCTTTTTCACCCTTGAATCGGGTTGCAACGGTGTCGTCTTTGTTCAAATGCGGAAAAGAGAGGGAGATCCTAGCCCCAGCGCAATTGTGCAGCATATGATGACATCTGCAGCTGCAACAAAGAAACACATGTCAAGGTTTATCTTAAGAGTATTACCCATTGAAGTAGCATGCTATTCTTCAGAAGAGGAAATTTCAAGAGCAATCAAACCACTTCTTGAACAGCACTTTCCAGTGGAAACTCCGAATCCTCAGAAGTTTGCAGTCCTGTATGAAGCCCGTGCAAATACCGGTATAGACAGGATGAAAATCATAAATGCAGTGGCAAAATCTGTGCCTGCACCTCACAAAGTTGACCTCAACAATCCCGATAAGACCATTGTTGTTGAAATTTGCAGGACTATTTGCATGATCGGTGTTGTTGACAAGTACAAGCAGTTAGCAAAGTACAATTTGAGGCAGCTCACATCATCGAAGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
THUMP

Protein Analysis

386

Amino Acids

42.84

Weight (kDa)

5.53

Isoelectric Point (pI)

53.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
THUMP PF02926 284 - 366 4.8e-16 THUMP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G12410
fragaria_vesca FvH4_3g28330 FvH4_3g28330
malus_domestica MD03G1170300.v1.1 MD11G1187800.v1.1
prunus_persica Prupe.4G256800_v2.0.a1
pyrus_communis pycom03g12680 pycom11g16450
rosa_chinensis RchiOBHm_Chr5g0051211
rosa_laevigata RLG00000034763
rosa_multiflora Rmu_sc0002385.1_g000021 Rmu_sc0042180.1_g000001
rosa_roxburghii Rroxscaffold_1G00029150
rosa_rugosa Rorug05G0266700
rosa_samantha Rh5AG339000 Rh5BG348900 Rh5CG375900 Rh5DG361800
rosa_wichuraiana Rw5G032030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 512
AccB1I GGYRCC 1 cut(s) 235
AccII CGCG 1 cut(s) 86
AciI CCGC 3 cut(s) 68, 135, 727
AclI AACGTT 1 cut(s) 171
AclWI GGATC 1 cut(s) 737
AcsI RAATTY 3 cut(s) 587, 867, 1065
AcuI CTGAAG 2 cut(s) 510, 840
AfaI GTAC 3 cut(s) 89, 1106, 1124
AfeI AGCGCT 1 cut(s) 47
AfiI CCNNNNNNNGG 4 cut(s) 36, 106, 448, 694
AflII CTTAAG 1 cut(s) 820
AflIII ACRYGT 1 cut(s) 804
AgeI ACCGGT 1 cut(s) 965
AjnI CCWGG 1 cut(s) 100
AluBI AGCT 8 cut(s) 196, 226, 539, 631, 641, 646, 788, 1138
AluI AGCT 8 cut(s) 196, 226, 539, 631, 641, 646, 788, 1138
Alw26I GTCTC 1 cut(s) 667
AlwI GGATC 1 cut(s) 737
Aor51HI AGCGCT 1 cut(s) 47
ApeKI GCWGC 5 cut(s) 43, 766, 785, 788, 1135
ApoI RAATTY 3 cut(s) 587, 867, 1065
AsiGI ACCGGT 1 cut(s) 965
Asp700I GAANNNNTTC 1 cut(s) 577
AspLEI GCGC 3 cut(s) 48, 86, 758
AsuHPI GGTGA 6 cut(s) 82, 305, 311, 380, 395, 676
BanI GGYRCC 1 cut(s) 235
BbsI GAAGAC 1 cut(s) 498
BbvCI CCTCAGC 1 cut(s) 540
BbvI GCAGC 5 cut(s) 55, 775, 778, 797, 1147
BccI CCATC 2 cut(s) 125, 629
BcgI CGANNNNNNTGC 2 cut(s) 691, 725
BciT130I CCWGG 1 cut(s) 102
BcoDI GTCTC 1 cut(s) 667
BfaI CTAG 3 cut(s) 197, 569, 747
BfmI CTRYAG 1 cut(s) 783
BfoI RGCGCY 1 cut(s) 49
BfrI CTTAAG 1 cut(s) 820
BisI GCNGC 5 cut(s) 44, 767, 786, 789, 1136
BlpI GCTNAGC 1 cut(s) 642
BlsI GCNGC 5 cut(s) 45, 768, 787, 790, 1137
Bme1390I CCNGG 1 cut(s) 102
BmiI GGNNCC 2 cut(s) 237, 546
BmrFI CCNGG 1 cut(s) 102
BmrI ACTGGG 1 cut(s) 665
BmsI GCATC 2 cut(s) 391, 445
BmuI ACTGGG 1 cut(s) 665
BpiI GAAGAC 1 cut(s) 498
Bpu10I CCTNAGC 1 cut(s) 540
Bpu1102I GCTNAGC 1 cut(s) 642
Bsa29I ATCGAT 1 cut(s) 624
BsaBI GATNNNNATC 1 cut(s) 983
BsaJI CCNNGG 1 cut(s) 100
BsaWI WCCGGW 1 cut(s) 965
Bsc4I CCNNNNNNNGG 4 cut(s) 36, 106, 448, 694
Bse118I RCCGGY 1 cut(s) 965
Bse1I ACTGG 4 cut(s) 288, 405, 660, 908
Bse8I GATNNNNATC 1 cut(s) 983
BseBI CCWGG 1 cut(s) 102
BseCI ATCGAT 1 cut(s) 624
BseDI CCNNGG 1 cut(s) 100
BseGI GGATG 2 cut(s) 457, 984
BseJI GATNNNNATC 1 cut(s) 983
BseLI CCNNNNNNNGG 4 cut(s) 36, 106, 448, 694
BseMII CTCAG 6 cut(s) 170, 222, 468, 531, 633, 941
BseNI ACTGG 4 cut(s) 288, 405, 660, 908
BseRI GAGGAG 1 cut(s) 557
BseXI GCAGC 5 cut(s) 55, 775, 778, 797, 1147
BseYI CCCAGC 1 cut(s) 752
BsgI GTGCAG 2 cut(s) 785, 999
Bsh1236I CGCG 1 cut(s) 86
BshNI GGYRCC 1 cut(s) 235
BshTI ACCGGT 1 cut(s) 965
BshVI ATCGAT 1 cut(s) 624
BsiSI CCGG 1 cut(s) 966
BslI CCNNNNNNNGG 4 cut(s) 36, 106, 448, 694
BsmAI GTCTC 1 cut(s) 667
BsmBI CGTCTC 1 cut(s) 667
Bsp143I GATC 2 cut(s) 742, 1086
Bsp1720I GCTNAGC 1 cut(s) 642
BspACI CCGC 3 cut(s) 68, 135, 727
BspCNI CTCAG 6 cut(s) 169, 223, 469, 532, 634, 940
BspDI ATCGAT 1 cut(s) 624
BspFNI CGCG 1 cut(s) 86
BspHI TCATGA 1 cut(s) 409
BspLI GGNNCC 2 cut(s) 237, 546
BspMAI CTGCAG 1 cut(s) 787
BspPI GGATC 1 cut(s) 737
BspQI GCTCTTC 1 cut(s) 186
BspT107I GGYRCC 1 cut(s) 235
BspTI CTTAAG 1 cut(s) 820
BsrFI RCCGGY 1 cut(s) 965
BsrI ACTGG 4 cut(s) 288, 405, 660, 908
BssAI RCCGGY 1 cut(s) 965
BssECI CCNNGG 1 cut(s) 100
BssMI GATC 2 cut(s) 742, 1086
Bst2UI CCWGG 1 cut(s) 102
Bst4CI ACNGT 1 cut(s) 707
Bst6I CTCTTC 5 cut(s) 186, 348, 366, 606, 855
BstAFI CTTAAG 1 cut(s) 820
BstC8I GCNNGC 2 cut(s) 847, 1014
BstDEI CTNAG 6 cut(s) 156, 231, 477, 540, 642, 927
BstF5I GGATG 2 cut(s) 457, 984
BstFNI CGCG 1 cut(s) 86
BstH2I RGCGCY 1 cut(s) 49
BstHHI GCGC 3 cut(s) 48, 86, 758
BstKTI GATC 2 cut(s) 745, 1089
BstMAI GTCTC 1 cut(s) 667
BstMBI GATC 2 cut(s) 742, 1086
BstMWI GCNNNNNNNGC 1 cut(s) 536
BstNI CCWGG 1 cut(s) 102
BstNSI RCATGY 2 cut(s) 808, 849
BstSCI CCNGG 1 cut(s) 100
BstSFI CTRYAG 1 cut(s) 783
BstUI CGCG 1 cut(s) 86
BstV1I GCAGC 5 cut(s) 55, 775, 778, 797, 1147
BstV2I GAAGAC 1 cut(s) 498
BstX2I RGATCY 1 cut(s) 742
BstYI RGATCY 1 cut(s) 742
Bsu15I ATCGAT 1 cut(s) 624
BsuTUI ATCGAT 1 cut(s) 624
BtgZI GCGATG 1 cut(s) 144
BtsCI GGATG 2 cut(s) 457, 984
BtsI GCAGTG 1 cut(s) 1002
BtsIMutI CAGTG 5 cut(s) 208, 295, 486, 915, 1002
Cac8I GCNNGC 2 cut(s) 847, 1014
CciI TCATGA 1 cut(s) 409
CfoI GCGC 3 cut(s) 48, 86, 758
Cfr10I RCCGGY 1 cut(s) 965
ClaI ATCGAT 1 cut(s) 624
CseI GACGC 1 cut(s) 684
Csp6I GTAC 3 cut(s) 88, 1105, 1123
CspAI ACCGGT 1 cut(s) 965
CviAII CATG 4 cut(s) 410, 805, 846, 1084
CviQI GTAC 3 cut(s) 88, 1105, 1123
DdeI CTNAG 6 cut(s) 156, 231, 477, 540, 642, 927
DpnI GATC 2 cut(s) 744, 1088
DpnII GATC 2 cut(s) 742, 1086
Eam1104I CTCTTC 5 cut(s) 186, 348, 366, 606, 855
EarI CTCTTC 5 cut(s) 186, 348, 366, 606, 855
EciI GGCGGA 1 cut(s) 150
Eco47III AGCGCT 1 cut(s) 47
Eco57I CTGAAG 2 cut(s) 510, 840
EcoRII CCWGG 1 cut(s) 100
Esp3I CGTCTC 1 cut(s) 667
FaeI CATG 4 cut(s) 413, 808, 849, 1087
FalI AAGNNNNNCTT 4 cut(s) 630, 662, 662, 694
FatI CATG 4 cut(s) 409, 804, 845, 1083
FauNDI CATATG 1 cut(s) 771
Fnu4HI GCNGC 5 cut(s) 44, 767, 786, 789, 1136
FokI GGATG 2 cut(s) 464, 991
Fsp4HI GCNGC 5 cut(s) 44, 767, 786, 789, 1136
FspBI CTAG 3 cut(s) 197, 569, 747
GlaI GCGC 3 cut(s) 47, 85, 757
GluI GCNGC 5 cut(s) 44, 767, 786, 789, 1136
GsaI CCCAGC 1 cut(s) 756
HaeII RGCGCY 1 cut(s) 49
HapII CCGG 1 cut(s) 966
HgaI GACGC 1 cut(s) 684
HhaI GCGC 3 cut(s) 48, 86, 758
Hin1II CATG 4 cut(s) 413, 808, 849, 1087
Hin6I GCGC 3 cut(s) 46, 84, 756
HinP1I GCGC 3 cut(s) 46, 84, 756
HincII GTYRAC 2 cut(s) 1030, 1099
HindII GTYRAC 2 cut(s) 1030, 1099
HindIII AAGCTT 1 cut(s) 224
HinfI GANTC 7 cut(s) 114, 179, 281, 386, 578, 692, 922
HpaII CCGG 1 cut(s) 966
HphI GGTGA 6 cut(s) 82, 305, 311, 380, 395, 676
Hpy166II GTNNAC 3 cut(s) 245, 1030, 1099
Hpy188I TCNGA 6 cut(s) 232, 280, 436, 859, 921, 930
Hpy188III TCNNGA 6 cut(s) 158, 410, 650, 873, 893, 1043
Hpy8I GTNNAC 3 cut(s) 245, 1030, 1099
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 5 cut(s) 28, 104, 132, 258, 442
HpyCH4III ACNGT 1 cut(s) 707
HpyCH4IV ACGT 1 cut(s) 171
HpyF10VI GCNNNNNNNGC 1 cut(s) 536
HpyF3I CTNAG 6 cut(s) 156, 231, 477, 540, 642, 927
HpySE526I ACGT 1 cut(s) 171
Hsp92II CATG 4 cut(s) 413, 808, 849, 1087
HspAI GCGC 3 cut(s) 46, 84, 756
Kzo9I GATC 2 cut(s) 742, 1086
LguI GCTCTTC 1 cut(s) 186
LmnI GCTCC 1 cut(s) 544
Lsp1109I GCAGC 5 cut(s) 55, 775, 778, 797, 1147
LweI GCATC 2 cut(s) 391, 445
MaeI CTAG 3 cut(s) 197, 569, 747
MaeII ACGT 1 cut(s) 171
MalI GATC 2 cut(s) 744, 1088
MboI GATC 2 cut(s) 742, 1086
MfeI CAATTG 1 cut(s) 759
MflI RGATCY 1 cut(s) 742
MluCI AATT 6 cut(s) 587, 633, 759, 867, 1065, 1126
MlyI GAGTC 1 cut(s) 173
MroXI GAANNNNTTC 1 cut(s) 577
MseI TTAA 2 cut(s) 168, 821
MslI CAYNNNNRTG 1 cut(s) 414
MspA1I CMGCKG 1 cut(s) 788
MspCI CTTAAG 1 cut(s) 820
MspI CCGG 1 cut(s) 966
MspR9I CCNGG 1 cut(s) 102
MunI CAATTG 1 cut(s) 759
MvaI CCWGG 1 cut(s) 102
MvnI CGCG 1 cut(s) 86
MwoI GCNNNNNNNGC 1 cut(s) 536
NdeI CATATG 1 cut(s) 771
NdeII GATC 2 cut(s) 742, 1086
NlaIII CATG 4 cut(s) 413, 808, 849, 1087
NlaIV GGNNCC 2 cut(s) 237, 546
NspI RCATGY 2 cut(s) 808, 849
PaeI GCATGC 1 cut(s) 849
PagI TCATGA 1 cut(s) 409
PciI ACATGT 1 cut(s) 804
PciSI GCTCTTC 1 cut(s) 186
PcsI WCGNNNNNNNCGW 1 cut(s) 312
PdmI GAANNNNTTC 1 cut(s) 577
PfeI GAWTC 6 cut(s) 114, 281, 386, 578, 692, 922
PinAI ACCGGT 1 cut(s) 965
PkrI GCNGC 5 cut(s) 45, 768, 787, 790, 1137
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
PscI ACATGT 1 cut(s) 804
PsiI TTATAA 1 cut(s) 512
Psp1406I AACGTT 1 cut(s) 171
Psp6I CCWGG 1 cut(s) 100
PspFI CCCAGC 1 cut(s) 752
PspGI CCWGG 1 cut(s) 100
PspN4I GGNNCC 2 cut(s) 237, 546
PstI CTGCAG 1 cut(s) 787
PsuI RGATCY 1 cut(s) 742
PvuII CAGCTG 1 cut(s) 788
RsaI GTAC 3 cut(s) 89, 1106, 1124
RsaNI GTAC 3 cut(s) 88, 1105, 1123
RseI CAYNNNNRTG 1 cut(s) 414
SapI GCTCTTC 1 cut(s) 186
SaqAI TTAA 2 cut(s) 168, 821
SatI GCNGC 5 cut(s) 44, 767, 786, 789, 1136
Sau3AI GATC 2 cut(s) 742, 1086
SchI GAGTC 1 cut(s) 173
ScrFI CCNGG 1 cut(s) 102
SfaNI GCATC 2 cut(s) 391, 445
SfcI CTRYAG 1 cut(s) 783
SmiMI CAYNNNNRTG 1 cut(s) 414
SmlI CTYRAG 1 cut(s) 820
SmoI CTYRAG 1 cut(s) 820
SphI GCATGC 1 cut(s) 849
Sse9I AATT 6 cut(s) 587, 633, 759, 867, 1065, 1126
SsiI CCGC 3 cut(s) 68, 135, 727
SspMI CTAG 3 cut(s) 197, 569, 747
StyD4I CCNGG 1 cut(s) 100
TaaI ACNGT 1 cut(s) 707
TaiI ACGT 1 cut(s) 174
TaqI TCGA 2 cut(s) 624, 1148
TasI AATT 6 cut(s) 587, 633, 759, 867, 1065, 1126
TatI WGTACW 2 cut(s) 1104, 1122
TfiI GAWTC 6 cut(s) 114, 281, 386, 578, 692, 922
Tru1I TTAA 2 cut(s) 168, 821
Tru9I TTAA 2 cut(s) 168, 821
TscAI CASTG 5 cut(s) 208, 295, 493, 915, 1002
TseI GCWGC 5 cut(s) 43, 766, 785, 788, 1135
TspDTI ATGAA 7 cut(s) 109, 204, 333, 549, 570, 963, 995
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 5 cut(s) 208, 295, 493, 915, 1002
Vha464I CTTAAG 1 cut(s) 820
XapI RAATTY 3 cut(s) 587, 867, 1065
XceI RCATGY 2 cut(s) 808, 849
XmnI GAANNNNTTC 1 cut(s) 577
XspI CTAG 3 cut(s) 197, 569, 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.