Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0011885

Physical Location & Seq

Genomic Coordinates Forward (+)

18633288 .. 18639687

Gene Structure 6400 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGATGCTAAAGATAAGGATGGACACACCACGTTGCACTGTGCAGCGGAGTCAAGACATGCTGATGTGATTGAGACATTGGTAAATAAAGGAGCTGATGTTGAAGCTCAAAATAACAAAGGTATTGGAGAAATGAAGAAAGCAGGAGGGGCAGAGAAGAAAAGGGTGCGAAGGTCATCGGGCGCTATTCAAAACGGCGGCAGAGATTCCAGCTCCGATACCCCTCCTAGGAAACAAGCTACCCAGAAAGATGTGTTCCAGTTGTTTGCTGAGAAGGTGAGAGACAATAAGGATTTGGTGTCTAGGTGGGCTGTTCTACAGGAGACACGCGTGGAATATTTCAGGGGAAAGGATTTTGTAAGCTTTTTGAGAAATCATCCTGAGGTCAAAGATATTCTAGAATCAGATAGAAATCTAGAAGCTGAAGATATTGCCGATGCTTTACTGAGAAAGAATCTTCTAGTACGCTGTGATCGTGTGGTGAAAACTCTTCGTCCTGGGAAGAGAAAGTTGTCTACATGGCCTGCACATTGGGAGATCTTTCCAGACCAAGTATTTTCTGAGAACGACGCCTTCTTTGCATGGACTTTTGTTAAACGGAGGCCTCTCTGGCAGACACTGCTCTCATTTTTCTGGCCAGTGGTTACATTGGCAATTTGCTTGTTTCCTGTATATCCCCATCGGTGCAAGCTACTAATACTCTACTCATGTCTCGGTGTCCTCCTACTTTTTCTTTCTCTACTAGTTTTGAGAGGTACAATATTTGGAGTGCTATATATTGTTCTGGGAAAGCGAGTTTGGTTTTTCCCGAACATTCTCGCCGAGGAAGCTACTTTGAGAGAACTATTCCGTTTCTGGCCCAAGAAGGATGAAGAGGAGCGACCAAAGTGGACAACAAGGGTTTTCTATGCAGCAGTTGCAGTTCTGGTCATATTGCTGCTGAGGCACCATGCTCCTGATGAAGCTGCTAGAGCCAGGTACCAGAAACGTGTATCTAACATTATCGACGATGTTCTGGAGTGGTCTCCAAGATTGGCGCTTTCTGGGATGATGGAGAATATGCAAACTGTGGTTAACTCGACGGAGCCAAGTAATGCAACTGAGGAAGAGGTGACGCCGCCCGACACCATGGATGCAGAAACTTTCACGGTGCAGTACGATGCAGAAGTTAGTGAAAATCTAGAGAACAGCGACGAAAACCTAGACAGTAGAGAAGAAAACCTAGACAAGAGTGATGAACAGAAACATGATGACATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005791 GO:0006605 GO:0006612 GO:0006620 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0030867 GO:0031090 GO:0031205 GO:0031207 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0098588 GO:0098796 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 map03060 map04141

Pfam Domains

Protein Families

Sec62

Protein Analysis

420

Amino Acids

48.21

Weight (kDa)

5.84

Isoelectric Point (pI)

47.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank	PF00023	7 - 39	1.6e-06	Ankyrin repeat
Sec62	PF03839	143 - 274	2e-13	Translocation protein Sec62

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0011885)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20920 AT3G20920
fragaria_vesca	FvH4_3g28770
malus_domestica	MD03G1174500.v1.1 MD11G1192300.v1.1
prunus_persica	Prupe.4G250000_v2.0.a1
pyrus_communis	pycom03g13190 pycom11g16810
rosa_chinensis	RchiOBHm_Chr5g0052271
rosa_laevigata	RLG00000034829
rosa_multiflora	Rmu_sc0009513.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028110
rosa_rugosa	Rorug05G0273200
rosa_samantha	Rh5AG346100 Rh5BG356800 Rh5CG382100 Rh5DG372100
rosa_wichuraiana	Rw5G032640 Rw5G032680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	978
AccB1I	GGYRCC	2 cut(s)	945, 978
AccI	GTMKAC	1 cut(s)	515
AccII	CGCG	1 cut(s)	330
AciI	CCGC	3 cut(s)	47, 198, 1118
AcoI	YGGCCR	1 cut(s)	635
AcuI	CTGAAG	1 cut(s)	444
AcyI	GRCGYC	2 cut(s)	570, 1115
AfaI	GTAC	4 cut(s)	465, 757, 980, 1157
AfiI	CCNNNNNNNGG	1 cut(s)	228
AflIII	ACRYGT	2 cut(s)	328, 988
AgsI	TTSAA	2 cut(s)	104, 191
AhlI	ACTAGT	1 cut(s)	742
AjnI	CCWGG	2 cut(s)	496, 974
AjuI	GAANNNNNNNTTGG	2 cut(s)	781, 813
AluBI	AGCT	9 cut(s)	95, 107, 213, 239, 363, 422, 691, 830, 965
AluI	AGCT	9 cut(s)	95, 107, 213, 239, 363, 422, 691, 830, 965
Alw26I	GTCTC	5 cut(s)	68, 276, 317, 716, 1029
AlwNI	CAGNNNCTG	1 cut(s)	619
AoxI	GGCC	4 cut(s)	521, 602, 635, 857
ApeKI	GCWGC	4 cut(s)	44, 911, 937, 965
ArsI	GACNNNNNNTTYG	2 cut(s)	560, 592
Asp718I	GGTACC	1 cut(s)	978
AspA2I	CCTAGG	1 cut(s)	227
AspLEI	GCGC	2 cut(s)	185, 1039
AspS9I	GGNCC	1 cut(s)	858
AsuHPI	GGTGA	3 cut(s)	289, 493, 1123
AvrII	CCTAGG	1 cut(s)	227
AxyI	CCTNAGG	1 cut(s)	381
BalI	TGGCCA	1 cut(s)	637
BanI	GGYRCC	2 cut(s)	945, 978
BbvCI	CCTCAGC	1 cut(s)	941
BbvI	GCAGC	4 cut(s)	56, 923, 924, 952
BccI	CCATC	3 cut(s)	14, 687, 1045
BceAI	ACGGC	1 cut(s)	211
BciT130I	CCWGG	2 cut(s)	498, 976
BcoDI	GTCTC	5 cut(s)	68, 276, 317, 716, 1029
BcuI	ACTAGT	1 cut(s)	742
BfmI	CTRYAG	1 cut(s)	317
BfoI	RGCGCY	2 cut(s)	186, 1040
BglI	GCCNNNNNGGC	1 cut(s)	610
BglII	AGATCT	1 cut(s)	537
BisI	GCNGC	6 cut(s)	45, 199, 912, 938, 966, 1118
BlnI	CCTAGG	1 cut(s)	227
BlsI	GCNGC	6 cut(s)	46, 200, 913, 939, 967, 1119
Bme1390I	CCNGG	2 cut(s)	498, 976
BmgT120I	GGNCC	1 cut(s)	858
BmiI	GGNNCC	3 cut(s)	947, 980, 1086
BmrFI	CCNGG	2 cut(s)	498, 976
BmsI	GCATC	3 cut(s)	427, 1123, 1150
BpmI	CTGGAG	1 cut(s)	1037
Bpu10I	CCTNAGC	1 cut(s)	941
BsaBI	GATNNNNATC	1 cut(s)	411
BsaHI	GRCGYC	2 cut(s)	570, 1115
BsaI	GGTCTC	1 cut(s)	1029
BsaJI	CCNNGG	4 cut(s)	227, 497, 822, 1128
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bsc4I	CCNNNNNNNGG	1 cut(s)	228
Bse1I	ACTGG	2 cut(s)	259, 638
Bse21I	CCTNAGG	1 cut(s)	381
Bse8I	GATNNNNATC	1 cut(s)	411
BseBI	CCWGG	2 cut(s)	498, 976
BseDI	CCNNGG	4 cut(s)	227, 497, 822, 1128
BseGI	GGATG	6 cut(s)	10, 25, 376, 874, 1053, 1138
BseJI	GATNNNNATC	1 cut(s)	411
BseLI	CCNNNNNNNGG	1 cut(s)	228
BseMII	CTCAG	6 cut(s)	261, 372, 437, 552, 932, 1092
BseNI	ACTGG	2 cut(s)	259, 638
BseRI	GAGGAG	1 cut(s)	890
BseXI	GCAGC	4 cut(s)	56, 923, 924, 952
BsgI	GTGCAG	3 cut(s)	63, 510, 1172
Bsh1236I	CGCG	1 cut(s)	330
BshFI	GGCC	4 cut(s)	523, 604, 637, 859
BshNI	GGYRCC	2 cut(s)	945, 978
BslI	CCNNNNNNNGG	1 cut(s)	228
BsmAI	GTCTC	5 cut(s)	68, 276, 317, 716, 1029
BsnI	GGCC	4 cut(s)	523, 604, 637, 859
Bso31I	GGTCTC	1 cut(s)	1029
Bsp143I	GATC	2 cut(s)	472, 537
Bsp19I	CCATGG	1 cut(s)	1128
BspACI	CCGC	3 cut(s)	47, 198, 1118
BspANI	GGCC	4 cut(s)	523, 604, 637, 859
BspCNI	CTCAG	6 cut(s)	262, 373, 438, 553, 933, 1093
BspFNI	CGCG	1 cut(s)	330
BspLI	GGNNCC	3 cut(s)	947, 980, 1086
BspT107I	GGYRCC	2 cut(s)	945, 978
BspTNI	GGTCTC	1 cut(s)	1029
BsrI	ACTGG	2 cut(s)	259, 638
BssECI	CCNNGG	4 cut(s)	227, 497, 822, 1128
BssMI	GATC	2 cut(s)	472, 537
BssNI	GRCGYC	2 cut(s)	570, 1115
BssT1I	CCWWGG	2 cut(s)	227, 1128
Bst2UI	CCWGG	2 cut(s)	498, 976
Bst4CI	ACNGT	4 cut(s)	41, 1069, 1150, 1208
Bst6I	CTCTTC	4 cut(s)	495, 497, 867, 1101
BstACI	GRCGYC	2 cut(s)	570, 1115
BstAPI	GCANNNNNTGC	2 cut(s)	619, 917
BstC8I	GCNNGC	2 cut(s)	525, 689
BstDEI	CTNAG	6 cut(s)	270, 381, 446, 561, 941, 1101
BstDSI	CCRYGG	1 cut(s)	1128
BstF5I	GGATG	6 cut(s)	10, 25, 376, 874, 1053, 1138
BstFNI	CGCG	1 cut(s)	330
BstH2I	RGCGCY	2 cut(s)	186, 1040
BstHHI	GCGC	2 cut(s)	185, 1039
BstKTI	GATC	2 cut(s)	475, 540
BstMAI	GTCTC	5 cut(s)	68, 276, 317, 716, 1029
BstMBI	GATC	2 cut(s)	472, 537
BstMWI	GCNNNNNNNGC	8 cut(s)	149, 578, 610, 619, 827, 917, 943, 971
BstNI	CCWGG	2 cut(s)	498, 976
BstNSI	RCATGY	1 cut(s)	62
BstSCI	CCNGG	2 cut(s)	496, 974
BstSFI	CTRYAG	1 cut(s)	317
BstUI	CGCG	1 cut(s)	330
BstV1I	GCAGC	4 cut(s)	56, 923, 924, 952
BstX2I	RGATCY	1 cut(s)	537
BstYI	RGATCY	1 cut(s)	537
Bsu36I	CCTNAGG	1 cut(s)	381
BsuRI	GGCC	4 cut(s)	523, 604, 637, 859
BtgI	CCRYGG	1 cut(s)	1128
BtsCI	GGATG	6 cut(s)	10, 25, 376, 874, 1053, 1138
BtsI	GCAGTG	1 cut(s)	617
BtsIMutI	CAGTG	3 cut(s)	37, 617, 645
Cac8I	GCNNGC	2 cut(s)	525, 689
CaiI	CAGNNNCTG	1 cut(s)	619
CfoI	GCGC	2 cut(s)	185, 1039
Cfr13I	GGNCC	1 cut(s)	858
CseI	GACGC	2 cut(s)	578, 1123
Csp6I	GTAC	4 cut(s)	464, 756, 979, 1156
CviAII	CATG	7 cut(s)	59, 519, 582, 708, 950, 1129, 1247
CviQI	GTAC	4 cut(s)	464, 756, 979, 1156
DdeI	CTNAG	6 cut(s)	270, 381, 446, 561, 941, 1101
DpnI	GATC	2 cut(s)	474, 539
DpnII	GATC	2 cut(s)	472, 537
EaeI	YGGCCR	1 cut(s)	635
Eam1104I	CTCTTC	4 cut(s)	495, 497, 867, 1101
EarI	CTCTTC	4 cut(s)	495, 497, 867, 1101
Eco130I	CCWWGG	2 cut(s)	227, 1128
Eco147I	AGGCCT	1 cut(s)	604
Eco31I	GGTCTC	1 cut(s)	1029
Eco57I	CTGAAG	1 cut(s)	444
Eco81I	CCTNAGG	1 cut(s)	381
EcoRII	CCWGG	2 cut(s)	496, 974
EcoT14I	CCWWGG	2 cut(s)	227, 1128
ErhI	CCWWGG	2 cut(s)	227, 1128
FaeI	CATG	7 cut(s)	62, 522, 585, 711, 953, 1132, 1250
FatI	CATG	7 cut(s)	58, 518, 581, 707, 949, 1128, 1246
FblI	GTMKAC	1 cut(s)	515
Fnu4HI	GCNGC	6 cut(s)	45, 199, 912, 938, 966, 1118
FokI	GGATG	6 cut(s)	17, 32, 363, 881, 1060, 1145
Fsp4HI	GCNGC	6 cut(s)	45, 199, 912, 938, 966, 1118
GlaI	GCGC	2 cut(s)	184, 1038
GluI	GCNGC	6 cut(s)	45, 199, 912, 938, 966, 1118
GsuI	CTGGAG	1 cut(s)	1037
HaeII	RGCGCY	2 cut(s)	186, 1040
HaeIII	GGCC	4 cut(s)	523, 604, 637, 859
HgaI	GACGC	2 cut(s)	578, 1123
HhaI	GCGC	2 cut(s)	185, 1039
Hin1I	GRCGYC	2 cut(s)	570, 1115
Hin1II	CATG	7 cut(s)	62, 522, 585, 711, 953, 1132, 1250
Hin6I	GCGC	2 cut(s)	183, 1037
HinP1I	GCGC	2 cut(s)	183, 1037
HincII	GTYRAC	1 cut(s)	1075
HindII	GTYRAC	1 cut(s)	1075
HindIII	AAGCTT	1 cut(s)	361
HinfI	GANTC	4 cut(s)	50, 206, 401, 454
HpaI	GTTAAC	1 cut(s)	1075
HphI	GGTGA	3 cut(s)	289, 493, 1123
Hpy166II	GTNNAC	3 cut(s)	516, 891, 1075
Hpy188I	TCNGA	3 cut(s)	217, 406, 562
Hpy188III	TCNNGA	9 cut(s)	54, 380, 398, 416, 545, 808, 956, 1016, 1181
Hpy8I	GTNNAC	3 cut(s)	516, 891, 1075
Hpy99I	CGWCG	4 cut(s)	572, 1010, 1084, 1196
HpyAV	CCTTC	4 cut(s)	165, 268, 583, 859
HpyCH4III	ACNGT	4 cut(s)	41, 1069, 1150, 1208
HpyCH4IV	ACGT	2 cut(s)	32, 988
HpyF10VI	GCNNNNNNNGC	8 cut(s)	149, 578, 610, 619, 827, 917, 943, 971
HpyF3I	CTNAG	6 cut(s)	270, 381, 446, 561, 941, 1101
HpySE526I	ACGT	2 cut(s)	32, 988
Hsp92I	GRCGYC	2 cut(s)	570, 1115
Hsp92II	CATG	7 cut(s)	62, 522, 585, 711, 953, 1132, 1250
HspAI	GCGC	2 cut(s)	183, 1037
KpnI	GGTACC	1 cut(s)	982
KspAI	GTTAAC	1 cut(s)	1075
Kzo9I	GATC	2 cut(s)	472, 537
LmnI	GCTCC	5 cut(s)	92, 218, 877, 958, 1084
Lsp1109I	GCAGC	4 cut(s)	56, 923, 924, 952
LweI	GCATC	3 cut(s)	427, 1123, 1150
MaeII	ACGT	2 cut(s)	32, 988
MaeIII	GTNAC	2 cut(s)	643, 1111
MalI	GATC	2 cut(s)	474, 539
MboI	GATC	2 cut(s)	472, 537
MboII	GAAGA	9 cut(s)	148, 169, 437, 449, 482, 514, 884, 1118, 1226
MflI	RGATCY	1 cut(s)	537
MlsI	TGGCCA	1 cut(s)	637
MluCI	AATT	1 cut(s)	654
MluI	ACGCGT	1 cut(s)	328
MluNI	TGGCCA	1 cut(s)	637
MlyI	GAGTC	1 cut(s)	59
Mox20I	TGGCCA	1 cut(s)	637
MscI	TGGCCA	1 cut(s)	637
MseI	TTAA	2 cut(s)	594, 1074
MslI	CAYNNNNRTG	1 cut(s)	63
Msp20I	TGGCCA	1 cut(s)	637
MspA1I	CMGCKG	1 cut(s)	47
MspR9I	CCNGG	2 cut(s)	498, 976
MvaI	CCWGG	2 cut(s)	498, 976
MvnI	CGCG	1 cut(s)	330
MwoI	GCNNNNNNNGC	8 cut(s)	149, 578, 610, 619, 827, 917, 943, 971
NcoI	CCATGG	1 cut(s)	1128
NdeII	GATC	2 cut(s)	472, 537
NlaIII	CATG	7 cut(s)	62, 522, 585, 711, 953, 1132, 1250
NlaIV	GGNNCC	3 cut(s)	947, 980, 1086
NmeAIII	GCCGAG	1 cut(s)	847
NmuCI	GTSAC	1 cut(s)	1111
NspI	RCATGY	1 cut(s)	62
PceI	AGGCCT	1 cut(s)	604
PcsI	WCGNNNNNNNCGW	1 cut(s)	472
PfeI	GAWTC	3 cut(s)	206, 401, 454
PkrI	GCNGC	6 cut(s)	46, 200, 913, 939, 967, 1119
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
Psp6I	CCWGG	2 cut(s)	496, 974
PspGI	CCWGG	2 cut(s)	496, 974
PspN4I	GGNNCC	3 cut(s)	947, 980, 1086
PspPI	GGNCC	1 cut(s)	858
PstNI	CAGNNNCTG	1 cut(s)	619
PsuI	RGATCY	1 cut(s)	537
RsaI	GTAC	4 cut(s)	465, 757, 980, 1157
RsaNI	GTAC	4 cut(s)	464, 756, 979, 1156
RseI	CAYNNNNRTG	1 cut(s)	63
SaqAI	TTAA	2 cut(s)	594, 1074
SatI	GCNGC	6 cut(s)	45, 199, 912, 938, 966, 1118
Sau3AI	GATC	2 cut(s)	472, 537
Sau96I	GGNCC	1 cut(s)	858
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	2 cut(s)	498, 976
SfaNI	GCATC	3 cut(s)	427, 1123, 1150
SfcI	CTRYAG	1 cut(s)	317
SmiMI	CAYNNNNRTG	1 cut(s)	63
SpeI	ACTAGT	1 cut(s)	742
Sse9I	AATT	1 cut(s)	654
SseBI	AGGCCT	1 cut(s)	604
SsiI	CCGC	3 cut(s)	47, 198, 1118
SspI	AATATT	2 cut(s)	338, 762
StuI	AGGCCT	1 cut(s)	604
StyD4I	CCNGG	2 cut(s)	496, 974
StyI	CCWWGG	2 cut(s)	227, 1128
TaaI	ACNGT	4 cut(s)	41, 1069, 1150, 1208
TaiI	ACGT	2 cut(s)	35, 991
TaqI	TCGA	2 cut(s)	1005, 1079
TasI	AATT	1 cut(s)	654
TauI	GCSGC	2 cut(s)	201, 1120
TfiI	GAWTC	3 cut(s)	206, 401, 454
Tru1I	TTAA	2 cut(s)	594, 1074
Tru9I	TTAA	2 cut(s)	594, 1074
TscAI	CASTG	3 cut(s)	44, 624, 645
TseFI	GTSAC	1 cut(s)	1111
TseI	GCWGC	4 cut(s)	44, 911, 937, 965
Tsp45I	GTSAC	1 cut(s)	1111
TspDTI	ATGAA	4 cut(s)	149, 885, 975, 1251
TspGWI	ACGGA	3 cut(s)	613, 839, 1097
TspRI	CASTG	3 cut(s)	44, 624, 645
XbaI	TCTAGA	3 cut(s)	397, 415, 1180
XceI	RCATGY	1 cut(s)	62
XmaJI	CCTAGG	1 cut(s)	227
XmiI	GTMKAC	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.