Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0006102

Physical Location & Seq

Genomic Coordinates Reverse (-)

20184939 .. 20185976

Gene Structure 1038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGCTGAGCAGGGTCAAGAATTATCTTGAAGATCAGTTGCTGGGGTTTTCTTTGGTGCCTTTGTCGGAGGTCTTCGTTAAGAATGGGAAGTTAGAGAAAGAGTTCTCTCTTTCTTCAACTGATCTGTTTCATTTCCCAGCAGGGTTTGTCCAGTTGTCCCTCTCGTACACTGGAGATATCCCAGAAGTAATGTCCCTGGCCTCAAATCCTATTGTGCAGGACTCGGAGACAGCTGAGTCACGTGAATTAGATAGGTTAGAGTTCCCAGATCCGAACATTGACAATGAAGACCAGAGAATGGTTTCAGAGTACATTAAGTTCCCATGTTCTGAATTTGAGTCTCAAAGCTCTGAGAGCTTTGTCATTGCTGACTCTGAAACTCAGGTTATTTCCGAAGTGGGTATTCATGCTGTTGAAAGTTTCTCGACTGCTACTATTGAATCTACTCCTGTTCGGAAGCTTGATTCTCCCCCAAGCAGTGTGTCAACTAATGGTGTTTCATCTCCATCGGGTCATACAAGCTCAGAGTCGTATGATGCTCCATCAGCTGTGAAATCTCCAAACCACGAACAAGTTTTGGCGGTGGAAGAGAAAAAGGTGGATAAAGATGAAGAGATTAATTCGTCTGGTGGGGTGCCAAGTGAGACATTTGAGAATCCTACTGTCACAGTCACCACCGTTCCAGAGCAAACGGCGAATCCTACTGTCACAGTGACCGTTCCAGAGAATACGGCGAATCCTACTATCACAGTCACTGTTCCAGAGCATACGGCGGTGCAGCAGGATTTTGTAGACATGTACATGAAAAGCATGCAGCAATTCACCGAGTCCTTGGCAAAAATGAAGCTTCCGTTGGACCTTGAATCACCAACCAATTCAGGAAACTCGAGCACTGATCAGAAAATAGAGACACCAAAGAGCAGTGGTTCCCGGGTGTTTTATGGCAGTAGGGCTTTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

321

Amino Acids

34.98

Weight (kDa)

4.41

Isoelectric Point (pI)

56.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50530 AT1G50570 AT1G50570 AT5G55530 AT5G55530 AT5G55530
fragaria_vesca	FvH4_3g23940 FvH4_3g23940 FvH4_3g23940 FvH4_3g23940 FvH4_3g23940
malus_domestica	MD03G1189600.v1.1 MD11G1205900.v1.1
prunus_persica	Prupe.4G231700_v2.0.a1 Prupe.4G231700_v2.0.a1
pyrus_communis	pycom11g17860
rosa_chinensis	RchiOBHm_Chr5g0042441
rosa_laevigata	RLG00000034126
rosa_multiflora	Rmu_sc0002779.1_g000006
rosa_roxburghii	Rroxscaffold_1G00038250
rosa_rugosa	Rorug05G0200100 Rorug05G0200200
rosa_samantha	Rh5AG286500 Rh5BG291000 Rh5CG323100 Rh5DG300700
rosa_wichuraiana	Rw5G026600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	235
AccB1I	GGYRCC	2 cut(s)	55, 634
AccB7I	CCANNNNNTGG	1 cut(s)	298
AccI	GTMKAC	1 cut(s)	792
AciI	CCGC	2 cut(s)	581, 773
AclWI	GGATC	1 cut(s)	263
AcsI	RAATTY	1 cut(s)	332
AcvI	CACGTG	1 cut(s)	242
AfaI	GTAC	3 cut(s)	167, 311, 800
AfiI	CCNNNNNNNGG	1 cut(s)	298
AflIII	ACRYGT	1 cut(s)	795
AgsI	TTSAA	5 cut(s)	29, 117, 416, 440, 863
AjnI	CCWGG	1 cut(s)	195
AjuI	GAANNNNNNNTTGG	2 cut(s)	836, 868
AluBI	AGCT	7 cut(s)	233, 348, 357, 460, 522, 548, 847
AluI	AGCT	7 cut(s)	233, 348, 357, 460, 522, 548, 847
Alw21I	GWGCWC	1 cut(s)	893
Alw26I	GTCTC	4 cut(s)	221, 345, 638, 902
AlwI	GGATC	1 cut(s)	263
AlwNI	CAGNNNCTG	2 cut(s)	40, 755
Ama87I	CYCGRG	2 cut(s)	886, 930
AoxI	GGCC	1 cut(s)	198
ApeKI	GCWGC	2 cut(s)	778, 814
ApoI	RAATTY	1 cut(s)	332
AseI	ATTAAT	1 cut(s)	618
Asp700I	GAANNNNTTC	2 cut(s)	101, 301
AspS9I	GGNCC	1 cut(s)	856
AsuC2I	CCSGG	2 cut(s)	931, 932
AsuHPI	GGTGA	3 cut(s)	664, 814, 858
AvaI	CYCGRG	2 cut(s)	886, 930
AvaII	GGWCC	1 cut(s)	856
BanI	GGYRCC	2 cut(s)	55, 634
BbrPI	CACGTG	1 cut(s)	242
BbsI	GAAGAC	2 cut(s)	64, 294
Bbv12I	GWGCWC	1 cut(s)	893
BbvI	GCAGC	2 cut(s)	790, 826
BccI	CCATC	2 cut(s)	514, 550
BceAI	ACGGC	3 cut(s)	708, 747, 786
BciT130I	CCWGG	1 cut(s)	197
BclI	TGATCA	1 cut(s)	895
BcnI	CCSGG	2 cut(s)	931, 932
BcoDI	GTCTC	4 cut(s)	221, 345, 638, 902
BisI	GCNGC	2 cut(s)	779, 815
BlpI	GCTNAGC	1 cut(s)	5
BlsI	GCNGC	2 cut(s)	780, 816
Bme1390I	CCNGG	3 cut(s)	197, 931, 932
Bme18I	GGWCC	1 cut(s)	856
BmeT110I	CYCGRG	2 cut(s)	886, 930
BmgT120I	GGNCC	1 cut(s)	856
BmiI	GGNNCC	3 cut(s)	57, 636, 928
BmrFI	CCNGG	3 cut(s)	197, 931, 932
BmsI	GCATC	1 cut(s)	526
BpiI	GAAGAC	2 cut(s)	64, 294
BpmI	CTGGAG	1 cut(s)	192
Bpu1102I	GCTNAGC	1 cut(s)	5
BpuMI	CCSGG	2 cut(s)	931, 932
BsaAI	YACGTR	1 cut(s)	242
BsaJI	CCNNGG	3 cut(s)	195, 831, 930
Bsc4I	CCNNNNNNNGG	1 cut(s)	298
Bse1I	ACTGG	2 cut(s)	151, 175
Bse3DI	GCAATG	1 cut(s)	363
BseBI	CCWGG	1 cut(s)	197
BseDI	CCNNGG	3 cut(s)	195, 831, 930
BseLI	CCNNNNNNNGG	1 cut(s)	298
BseMI	GCAATG	1 cut(s)	363
BseMII	CTCAG	4 cut(s)	225, 342, 395, 537
BseNI	ACTGG	2 cut(s)	151, 175
BseXI	GCAGC	2 cut(s)	790, 826
BseYI	CCCAGC	2 cut(s)	40, 136
BsgI	GTGCAG	2 cut(s)	236, 797
BshFI	GGCC	1 cut(s)	200
BshNI	GGYRCC	2 cut(s)	55, 634
BsiHKAI	GWGCWC	1 cut(s)	893
BsiHKCI	CYCGRG	2 cut(s)	886, 930
BsiSI	CCGG	1 cut(s)	931
BslFI	GGGAC	2 cut(s)	142, 178
BslI	CCNNNNNNNGG	1 cut(s)	298
BsmAI	GTCTC	4 cut(s)	221, 345, 638, 902
BsmFI	GGGAC	2 cut(s)	142, 178
BsnI	GGCC	1 cut(s)	200
BsoBI	CYCGRG	2 cut(s)	886, 930
Bsp1286I	GDGCHC	1 cut(s)	893
Bsp1407I	TGTACA	1 cut(s)	798
Bsp143I	GATC	4 cut(s)	31, 121, 268, 895
Bsp1720I	GCTNAGC	1 cut(s)	5
BspACI	CCGC	2 cut(s)	581, 773
BspANI	GGCC	1 cut(s)	200
BspCNI	CTCAG	4 cut(s)	226, 343, 394, 536
BspLI	GGNNCC	3 cut(s)	57, 636, 928
BspPI	GGATC	1 cut(s)	263
BspT107I	GGYRCC	2 cut(s)	55, 634
BsrDI	GCAATG	1 cut(s)	363
BsrGI	TGTACA	1 cut(s)	798
BsrI	ACTGG	2 cut(s)	151, 175
BssECI	CCNNGG	3 cut(s)	195, 831, 930
BssMI	GATC	4 cut(s)	31, 121, 268, 895
BssT1I	CCWWGG	1 cut(s)	831
Bst2UI	CCWGG	1 cut(s)	197
Bst4CI	ACNGT	8 cut(s)	664, 670, 679, 706, 712, 718, 751, 757
Bst6I	CTCTTC	2 cut(s)	582, 606
BstAUI	TGTACA	1 cut(s)	798
BstBAI	YACGTR	1 cut(s)	242
BstC8I	GCNNGC	1 cut(s)	812
BstDEI	CTNAG	5 cut(s)	5, 234, 351, 381, 523
BstKTI	GATC	4 cut(s)	34, 124, 271, 898
BstMAI	GTCTC	4 cut(s)	221, 345, 638, 902
BstMBI	GATC	4 cut(s)	31, 121, 268, 895
BstMWI	GCNNNNNNNGC	2 cut(s)	354, 545
BstNI	CCWGG	1 cut(s)	197
BstNSI	RCATGY	2 cut(s)	799, 814
BstSCI	CCNGG	3 cut(s)	195, 929, 930
BstV1I	GCAGC	2 cut(s)	790, 826
BstV2I	GAAGAC	2 cut(s)	64, 294
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
BsuRI	GGCC	1 cut(s)	200
BtsI	GCAGTG	2 cut(s)	484, 928
BtsIMutI	CAGTG	6 cut(s)	168, 484, 717, 753, 891, 928
Cac8I	GCNNGC	1 cut(s)	812
CaiI	CAGNNNCTG	2 cut(s)	40, 755
Cfr13I	GGNCC	1 cut(s)	856
Cfr9I	CCCGGG	1 cut(s)	930
Csp6I	GTAC	3 cut(s)	166, 310, 799
CviAII	CATG	5 cut(s)	324, 407, 796, 802, 811
CviJI	RGCY	9 cut(s)	200, 233, 348, 357, 460, 522, 548, 847, 953
CviKI_1	RGCY	9 cut(s)	200, 233, 348, 357, 460, 522, 548, 847, 953
CviQI	GTAC	3 cut(s)	166, 310, 799
DdeI	CTNAG	5 cut(s)	5, 234, 351, 381, 523
DpnI	GATC	4 cut(s)	33, 123, 270, 897
DpnII	GATC	4 cut(s)	31, 121, 268, 895
DrdI	GACNNNNNNGTC	1 cut(s)	235
DseDI	GACNNNNNNGTC	1 cut(s)	235
Eam1104I	CTCTTC	2 cut(s)	582, 606
EarI	CTCTTC	2 cut(s)	582, 606
Eco130I	CCWWGG	1 cut(s)	831
Eco32I	GATATC	1 cut(s)	178
Eco47I	GGWCC	1 cut(s)	856
Eco72I	CACGTG	1 cut(s)	242
Eco88I	CYCGRG	2 cut(s)	886, 930
EcoRII	CCWGG	1 cut(s)	195
EcoRV	GATATC	1 cut(s)	178
EcoT14I	CCWWGG	1 cut(s)	831
ErhI	CCWWGG	1 cut(s)	831
FaeI	CATG	5 cut(s)	327, 410, 799, 805, 814
FaiI	YATR	9 cut(s)	325, 408, 516, 534, 768, 797, 803, 812, 942
FaqI	GGGAC	2 cut(s)	142, 178
FatI	CATG	5 cut(s)	323, 406, 795, 801, 810
FbaI	TGATCA	1 cut(s)	895
FblI	GTMKAC	1 cut(s)	792
Fnu4HI	GCNGC	2 cut(s)	779, 815
Fsp4HI	GCNGC	2 cut(s)	779, 815
GluI	GCNGC	2 cut(s)	779, 815
GsaI	CCCAGC	2 cut(s)	44, 140
GsuI	CTGGAG	1 cut(s)	192
HaeIII	GGCC	1 cut(s)	200
HapII	CCGG	1 cut(s)	931
Hin1II	CATG	5 cut(s)	327, 410, 799, 805, 814
HincII	GTYRAC	1 cut(s)	486
HindII	GTYRAC	1 cut(s)	486
HindIII	AAGCTT	2 cut(s)	458, 845
HpaII	CCGG	1 cut(s)	931
HphI	GGTGA	3 cut(s)	664, 814, 858
Hpy166II	GTNNAC	3 cut(s)	168, 486, 793
Hpy188III	TCNNGA	7 cut(s)	16, 26, 424, 683, 722, 761, 879
Hpy8I	GTNNAC	3 cut(s)	168, 486, 793
HpyCH4III	ACNGT	8 cut(s)	664, 670, 679, 706, 712, 718, 751, 757
HpyCH4IV	ACGT	1 cut(s)	241
HpyCH4V	TGCA	3 cut(s)	217, 778, 814
HpyF10VI	GCNNNNNNNGC	2 cut(s)	354, 545
HpyF3I	CTNAG	5 cut(s)	5, 234, 351, 381, 523
HpySE526I	ACGT	1 cut(s)	241
Hsp92II	CATG	5 cut(s)	327, 410, 799, 805, 814
Ksp22I	TGATCA	1 cut(s)	895
Kzo9I	GATC	4 cut(s)	31, 121, 268, 895
LmnI	GCTCC	1 cut(s)	544
Lsp1109I	GCAGC	2 cut(s)	790, 826
LweI	GCATC	1 cut(s)	526
MaeII	ACGT	1 cut(s)	241
MaeIII	GTNAC	6 cut(s)	237, 664, 670, 706, 712, 751
MalI	GATC	4 cut(s)	33, 123, 270, 897
MboI	GATC	4 cut(s)	31, 121, 268, 895
MboII	GAAGA	7 cut(s)	41, 64, 105, 299, 599, 623, 949
MflI	RGATCY	1 cut(s)	268
MhlI	GDGCHC	1 cut(s)	893
MluCI	AATT	6 cut(s)	19, 245, 332, 619, 818, 874
MlyI	GAGTC	6 cut(s)	215, 245, 347, 365, 536, 836
MmeI	TCCRAC	2 cut(s)	45, 834
MnlI	CCTC	3 cut(s)	61, 170, 211
MroXI	GAANNNNTTC	2 cut(s)	101, 301
MseI	TTAA	3 cut(s)	78, 315, 618
MslI	CAYNNNNRTG	1 cut(s)	800
MspA1I	CMGCKG	2 cut(s)	233, 548
MspI	CCGG	1 cut(s)	931
MspR9I	CCNGG	3 cut(s)	197, 931, 932
MvaI	CCWGG	1 cut(s)	197
MwoI	GCNNNNNNNGC	2 cut(s)	354, 545
NciI	CCSGG	2 cut(s)	931, 932
NdeII	GATC	4 cut(s)	31, 121, 268, 895
NlaIII	CATG	5 cut(s)	327, 410, 799, 805, 814
NlaIV	GGNNCC	3 cut(s)	57, 636, 928
NmuCI	GTSAC	6 cut(s)	237, 664, 670, 706, 712, 751
NspI	RCATGY	2 cut(s)	799, 814
PaeI	GCATGC	1 cut(s)	814
PaeR7I	CTCGAG	1 cut(s)	886
PciI	ACATGT	1 cut(s)	795
PdmI	GAANNNNTTC	2 cut(s)	101, 301
PfeI	GAWTC	6 cut(s)	440, 464, 655, 697, 736, 863
PflMI	CCANNNNNTGG	1 cut(s)	298
PkrI	GCNGC	2 cut(s)	780, 816
PleI	GAGTC	6 cut(s)	215, 244, 346, 365, 535, 835
PmaCI	CACGTG	1 cut(s)	242
PmlI	CACGTG	1 cut(s)	242
PpsI	GAGTC	6 cut(s)	215, 244, 346, 365, 535, 835
Ppu21I	YACGTR	1 cut(s)	242
PscI	ACATGT	1 cut(s)	795
PshBI	ATTAAT	1 cut(s)	618
Psp6I	CCWGG	1 cut(s)	195
PspCI	CACGTG	1 cut(s)	242
PspFI	CCCAGC	2 cut(s)	40, 136
PspGI	CCWGG	1 cut(s)	195
PspN4I	GGNNCC	3 cut(s)	57, 636, 928
PspPI	GGNCC	1 cut(s)	856
PspXI	VCTCGAGB	1 cut(s)	886
PsrI	GAACNNNNNNTAC	2 cut(s)	302, 334
PstNI	CAGNNNCTG	2 cut(s)	40, 755
PsuI	RGATCY	1 cut(s)	268
PvuII	CAGCTG	2 cut(s)	233, 548
RsaI	GTAC	3 cut(s)	167, 311, 800
RsaNI	GTAC	3 cut(s)	166, 310, 799
RseI	CAYNNNNRTG	1 cut(s)	800
SaqAI	TTAA	3 cut(s)	78, 315, 618
SatI	GCNGC	2 cut(s)	779, 815
Sau3AI	GATC	4 cut(s)	31, 121, 268, 895
Sau96I	GGNCC	1 cut(s)	856
SchI	GAGTC	6 cut(s)	215, 245, 347, 365, 536, 836
ScrFI	CCNGG	3 cut(s)	197, 931, 932
SduI	GDGCHC	1 cut(s)	893
SfaNI	GCATC	1 cut(s)	526
Sfr274I	CTCGAG	1 cut(s)	886
SinI	GGWCC	1 cut(s)	856
SlaI	CTCGAG	1 cut(s)	886
SmaI	CCCGGG	1 cut(s)	932
SmiMI	CAYNNNNRTG	1 cut(s)	800
SmlI	CTYRAG	1 cut(s)	886
SmoI	CTYRAG	1 cut(s)	886
SphI	GCATGC	1 cut(s)	814
Sse9I	AATT	6 cut(s)	19, 245, 332, 619, 818, 874
SsiI	CCGC	2 cut(s)	581, 773
StyD4I	CCNGG	3 cut(s)	195, 929, 930
StyI	CCWWGG	1 cut(s)	831
TaaI	ACNGT	8 cut(s)	664, 670, 679, 706, 712, 718, 751, 757
TaiI	ACGT	1 cut(s)	244
TaqI	TCGA	2 cut(s)	425, 887
TasI	AATT	6 cut(s)	19, 245, 332, 619, 818, 874
TatI	WGTACW	2 cut(s)	309, 798
TfiI	GAWTC	6 cut(s)	440, 464, 655, 697, 736, 863
Tru1I	TTAA	3 cut(s)	78, 315, 618
Tru9I	TTAA	3 cut(s)	78, 315, 618
TscAI	CASTG	6 cut(s)	175, 484, 717, 760, 898, 928
TseFI	GTSAC	6 cut(s)	237, 664, 670, 706, 712, 751
TseI	GCWGC	2 cut(s)	778, 814
Tsp45I	GTSAC	6 cut(s)	237, 664, 670, 706, 712, 751
TspDTI	ATGAA	7 cut(s)	119, 300, 395, 489, 624, 818, 857
TspGWI	ACGGA	1 cut(s)	840
TspMI	CCCGGG	1 cut(s)	930
TspRI	CASTG	6 cut(s)	175, 484, 717, 760, 898, 928
Van91I	CCANNNNNTGG	1 cut(s)	298
VpaK11BI	GGWCC	1 cut(s)	856
VspI	ATTAAT	1 cut(s)	618
XapI	RAATTY	1 cut(s)	332
XceI	RCATGY	2 cut(s)	799, 814
XhoI	CTCGAG	1 cut(s)	886
XmaI	CCCGGG	1 cut(s)	930
XmiI	GTMKAC	1 cut(s)	792
XmnI	GAANNNNTTC	2 cut(s)	101, 301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.