Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0008258

Physical Location & Seq

Genomic Coordinates Reverse (-)

20247597 .. 20250758

Gene Structure 3162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGGGTGTGGCACTCATGTAAAACAGCTAAGGTTCCCCAAACCTCAATCCTTAGTGTATCATAAAAGTCCCTGGAGCTCAAGCAAACTTGTGCCATGTTGGTCTTATTGGCCGCCAATAACAATTCACTTTGACCTTCCAAAAATACACCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCATTACTACTATATATAGAGCTGCAAATATCTTTCATTTGTCCTCACATTATTTTGCAGCAGTTTTCAAATTTCAAGCCAAAGTTTTAGAGACTGAAAAAATGCCTGAGAAGGAAGTTTCAAGTGTCCTGAAAAAACCTCGTGTTGTGGTGAGGAAGTTCTTGGCGAGGCCTCAGCTTGAAGGAGTTGGAGCCATTGTTAGAAGGAGCATAGGGAGGTTTGAGCTGCAATACTTTGATCCTTTTCTTGTTTTGGATGAGTTCTCAGTTACTGCTCCTGCTGGTTTCCCGGATCATCCACACAGAGGTTTTGAGACAGTGACCTACATGTTGCAGGGAGCTGTGACGCATGAAGATTTTGAAGGGCACAAAGGGACAATAGGAGCCGGTGACCTACAGTGGATGACCGCCGGAAGAGGCATCCTTCACTCGGAAATGCCTGCCGCCCAGGGAACCCAAAAGGGTTTACAGTTGTGGATAAACCTCTCCTCCAAGCATAAAATGATTGATCCAAAGTATCAAGAACTGCTGAGCAAGGACGTTGCAGAGGCTTCAAAAGATGGGATCGAAGTTAGAGTAATAGCAGGAGAAGCCTTGGGAACAAAGTCACCAATTTACACAAGGACCCCAACCATGTACTTAGACTTCACACTGAAACCAGGAGCTCACTTGGAACAACCAATACCAACATCATGGAATGCATTTGTCTATGTGTTGGAGGGGGAGGGAATTTTTGGCAGTTCAAAATCTTTGCCCGTGACTGCCCACCACCTTCTTCTTCTTGGAATATCTGGGGATGGCTTGGAGACATGGAACAAGTCTTCGAAAACCCTAAGATTTATCTTGGTTGGAGGTGAGCCTTTGGGGGAGCCTATAACGCAATTTGGCCCCTTTGTGATGAACAGTCAGGAAGAGATTGACCAGACCATTGATGATTTTGACAATTGTGTCAATGGATTTGAGAAGGCTAGACATTGGAGATCTGGACATTTACTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pirin Pirin_C

Protein Analysis

394

Amino Acids

43.96

Weight (kDa)

7.31

Isoelectric Point (pI)

43.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pirin	PF02678	127 - 220	2.6e-31	Pirin
Pirin_C	PF05726	273 - 378	8.1e-33	Pirin C-terminal cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50590 AT1G50590 AT1G50590
fragaria_vesca	FvH4_3g23750
malus_domestica	MD03G1190300.v1.1 MD11G1206900.v1.1
prunus_persica	Prupe.4G229700_v2.0.a1
pyrus_communis	pycom03g14310 pycom11g17990
rosa_chinensis	RchiOBHm_Chr5g0041911 RchiOBHm_Chr5g0041961
rosa_laevigata	RLG00000034105
rosa_multiflora	Rmu_co8239403.1_g000001 Rmu_sc0009443.1_g000006 Rmu_sc0010997.1_g000001
rosa_rugosa	Rorug05G0197300
rosa_samantha	Rh5AG281800 Rh5AG282200 Rh5BG287300 Rh5BG287800 Rh5CG319600 Rh5DG296700
rosa_wichuraiana	Rw0G001360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1127
AciI	CCGC	3 cut(s)	113, 588, 624
AclWI	GGATC	4 cut(s)	413, 480, 683, 752
AcoI	YGGCCR	1 cut(s)	110
AcsI	RAATTY	2 cut(s)	251, 909
AfaI	GTAC	1 cut(s)	818
AfiI	CCNNNNNNNGG	2 cut(s)	485, 610
AflIII	ACRYGT	1 cut(s)	507
AgsI	TTSAA	7 cut(s)	250, 257, 303, 362, 542, 735, 924
AjnI	CCWGG	3 cut(s)	71, 627, 838
AluBI	AGCT	7 cut(s)	28, 78, 203, 358, 406, 521, 845
AluI	AGCT	7 cut(s)	28, 78, 203, 358, 406, 521, 845
Alw21I	GWGCWC	2 cut(s)	80, 847
Alw26I	GTCTC	3 cut(s)	266, 488, 980
AlwI	GGATC	4 cut(s)	413, 480, 683, 752
AlwNI	CAGNNNCTG	1 cut(s)	452
AoxI	GGCC	3 cut(s)	110, 350, 1066
ApeKI	GCWGC	3 cut(s)	203, 239, 406
ApoI	RAATTY	2 cut(s)	251, 909
AspS9I	GGNCC	2 cut(s)	804, 1067
AsuC2I	CCSGG	1 cut(s)	470
AsuHPI	GGTGA	4 cut(s)	343, 581, 780, 1046
AsuII	TTCGAA	1 cut(s)	1004
AvaII	GGWCC	1 cut(s)	804
BaeGI	GKGCMC	1 cut(s)	549
BanII	GRGCYC	2 cut(s)	80, 847
BarI	GAAGNNNNNNTAC	2 cut(s)	809, 841
BauI	CACGAG	1 cut(s)	321
BbsI	GAAGAC	1 cut(s)	993
Bbv12I	GWGCWC	2 cut(s)	80, 847
BbvCI	CCTCAGC	1 cut(s)	354
BbvI	GCAGC	3 cut(s)	190, 251, 393
BccI	CCATC	2 cut(s)	734, 971
BciT130I	CCWGG	3 cut(s)	73, 629, 840
BcnI	CCSGG	1 cut(s)	470
BcoDI	GTCTC	3 cut(s)	266, 488, 980
BfaI	CTAG	1 cut(s)	1149
BfmI	CTRYAG	1 cut(s)	575
BglII	AGATCT	1 cut(s)	1160
BisI	GCNGC	5 cut(s)	113, 204, 240, 407, 624
BlpI	GCTNAGC	1 cut(s)	710
BlsI	GCNGC	5 cut(s)	114, 205, 241, 408, 625
Bme1390I	CCNGG	4 cut(s)	73, 470, 629, 840
Bme18I	GGWCC	1 cut(s)	804
BmgT120I	GGNCC	2 cut(s)	804, 1067
BmiI	GGNNCC	7 cut(s)	35, 373, 565, 634, 806, 1050, 1069
BmrFI	CCNGG	4 cut(s)	73, 470, 629, 840
BmsI	GCATC	1 cut(s)	609
BpiI	GAAGAC	1 cut(s)	993
BpmI	CTGGAG	1 cut(s)	94
Bpu10I	CCTNAGC	2 cut(s)	29, 354
Bpu1102I	GCTNAGC	1 cut(s)	710
Bpu14I	TTCGAA	1 cut(s)	1004
BpuEI	CTTGAG	1 cut(s)	64
BpuMI	CCSGG	1 cut(s)	470
BsaJI	CCNNGG	4 cut(s)	71, 627, 628, 774
BsaXI	ACNNNNNCTCC	4 cut(s)	363, 393, 653, 683
Bsc4I	CCNNNNNNNGG	2 cut(s)	485, 610
Bse118I	RCCGGY	1 cut(s)	566
BseBI	CCWGG	3 cut(s)	73, 629, 840
BseDI	CCNNGG	4 cut(s)	71, 627, 628, 774
BseGI	GGATG	5 cut(s)	442, 475, 588, 600, 982
BseLI	CCNNNNNNNGG	2 cut(s)	485, 610
BseMII	CTCAG	4 cut(s)	279, 368, 459, 701
BseRI	GAGGAG	1 cut(s)	658
BseSI	GKGCMC	1 cut(s)	549
BseXI	GCAGC	3 cut(s)	190, 251, 393
BshFI	GGCC	3 cut(s)	112, 352, 1068
BsiHKAI	GWGCWC	2 cut(s)	80, 847
BsiSI	CCGG	3 cut(s)	470, 567, 591
BslFI	GGGAC	2 cut(s)	54, 568
BslI	CCNNNNNNNGG	2 cut(s)	485, 610
BsmAI	GTCTC	3 cut(s)	266, 488, 980
BsmFI	GGGAC	2 cut(s)	54, 568
BsmI	GAATGC	1 cut(s)	883
BsnI	GGCC	3 cut(s)	112, 352, 1068
Bsp119I	TTCGAA	1 cut(s)	1004
Bsp1286I	GDGCHC	3 cut(s)	80, 549, 847
Bsp143I	GATC	5 cut(s)	418, 472, 688, 744, 1160
Bsp1720I	GCTNAGC	1 cut(s)	710
BspACI	CCGC	3 cut(s)	113, 588, 624
BspANI	GGCC	3 cut(s)	112, 352, 1068
BspCNI	CTCAG	4 cut(s)	280, 367, 458, 702
BspLI	GGNNCC	7 cut(s)	35, 373, 565, 634, 806, 1050, 1069
BspPI	GGATC	4 cut(s)	413, 480, 683, 752
BspT104I	TTCGAA	1 cut(s)	1004
BsrFI	RCCGGY	1 cut(s)	566
BssAI	RCCGGY	1 cut(s)	566
BssECI	CCNNGG	4 cut(s)	71, 627, 628, 774
BssMI	GATC	5 cut(s)	418, 472, 688, 744, 1160
BssSI	CACGAG	1 cut(s)	321
BssT1I	CCWWGG	1 cut(s)	774
Bst2BI	CACGAG	1 cut(s)	321
Bst2UI	CCWGG	3 cut(s)	73, 629, 840
Bst4CI	ACNGT	4 cut(s)	499, 579, 651, 1085
Bst6I	CTCTTC	2 cut(s)	589, 1086
BstBI	TTCGAA	1 cut(s)	1004
BstC8I	GCNNGC	1 cut(s)	621
BstDEI	CTNAG	8 cut(s)	29, 52, 288, 354, 445, 710, 820, 1013
BstEII	GGTNACC	1 cut(s)	569
BstF5I	GGATG	5 cut(s)	442, 475, 588, 600, 982
BstKTI	GATC	5 cut(s)	421, 475, 691, 747, 1163
BstMAI	GTCTC	3 cut(s)	266, 488, 980
BstMBI	GATC	5 cut(s)	418, 472, 688, 744, 1160
BstMWI	GCNNNNNNNGC	2 cut(s)	770, 1057
BstNI	CCWGG	3 cut(s)	73, 629, 840
BstNSI	RCATGY	1 cut(s)	511
BstPI	GGTNACC	1 cut(s)	569
BstSCI	CCNGG	4 cut(s)	71, 468, 627, 838
BstSFI	CTRYAG	1 cut(s)	575
BstSLI	GKGCMC	1 cut(s)	549
BstV1I	GCAGC	3 cut(s)	190, 251, 393
BstV2I	GAAGAC	1 cut(s)	993
BstX2I	RGATCY	1 cut(s)	1160
BstXI	CCANNNNNNTGG	1 cut(s)	873
BstYI	RGATCY	1 cut(s)	1160
BsuRI	GGCC	3 cut(s)	112, 352, 1068
BtsCI	GGATG	5 cut(s)	442, 475, 588, 600, 982
BtsIMutI	CAGTG	3 cut(s)	504, 584, 830
Cac8I	GCNNGC	1 cut(s)	621
CaiI	CAGNNNCTG	1 cut(s)	452
Cfr10I	RCCGGY	1 cut(s)	566
Cfr13I	GGNCC	2 cut(s)	804, 1067
CseI	GACGC	1 cut(s)	535
Csp6I	GTAC	1 cut(s)	817
CviAII	CATG	7 cut(s)	17, 96, 508, 530, 814, 873, 990
CviQI	GTAC	1 cut(s)	817
DdeI	CTNAG	8 cut(s)	29, 52, 288, 354, 445, 710, 820, 1013
DpnI	GATC	5 cut(s)	420, 474, 690, 746, 1162
DpnII	GATC	5 cut(s)	418, 472, 688, 744, 1160
DrdI	GACNNNNNNGTC	1 cut(s)	1127
DseDI	GACNNNNNNGTC	1 cut(s)	1127
EaeI	YGGCCR	1 cut(s)	110
Eam1104I	CTCTTC	2 cut(s)	589, 1086
EarI	CTCTTC	2 cut(s)	589, 1086
Ecl136II	GAGCTC	2 cut(s)	78, 845
Eco130I	CCWWGG	1 cut(s)	774
Eco147I	AGGCCT	1 cut(s)	352
Eco24I	GRGCYC	2 cut(s)	80, 847
Eco47I	GGWCC	1 cut(s)	804
Eco53kI	GAGCTC	2 cut(s)	78, 845
Eco91I	GGTNACC	1 cut(s)	569
EcoICRI	GAGCTC	2 cut(s)	78, 845
EcoO109I	RGGNCCY	1 cut(s)	804
EcoO65I	GGTNACC	1 cut(s)	569
EcoRII	CCWGG	3 cut(s)	71, 627, 838
EcoT14I	CCWWGG	1 cut(s)	774
EcoT22I	ATGCAT	1 cut(s)	883
EcoT38I	GRGCYC	2 cut(s)	80, 847
ErhI	CCWWGG	1 cut(s)	774
FaeI	CATG	7 cut(s)	20, 99, 511, 533, 817, 876, 993
FaqI	GGGAC	2 cut(s)	54, 568
FatI	CATG	7 cut(s)	16, 95, 507, 529, 813, 872, 989
Fnu4HI	GCNGC	5 cut(s)	113, 204, 240, 407, 624
FokI	GGATG	5 cut(s)	449, 462, 587, 595, 989
FriOI	GRGCYC	2 cut(s)	80, 847
Fsp4HI	GCNGC	5 cut(s)	113, 204, 240, 407, 624
FspBI	CTAG	1 cut(s)	1149
GluI	GCNGC	5 cut(s)	113, 204, 240, 407, 624
GsuI	CTGGAG	1 cut(s)	94
HaeIII	GGCC	3 cut(s)	112, 352, 1068
HapII	CCGG	3 cut(s)	470, 567, 591
HgaI	GACGC	1 cut(s)	535
Hin1II	CATG	7 cut(s)	20, 99, 511, 533, 817, 876, 993
HpaII	CCGG	3 cut(s)	470, 567, 591
HphI	GGTGA	4 cut(s)	343, 581, 780, 1046
Hpy166II	GTNNAC	1 cut(s)	647
Hpy188I	TCNGA	1 cut(s)	613
Hpy188III	TCNNGA	4 cut(s)	310, 701, 1088, 1164
Hpy8I	GTNNAC	1 cut(s)	647
HpyAV	CCTTC	8 cut(s)	146, 286, 356, 378, 536, 614, 962, 1138
HpyCH4III	ACNGT	4 cut(s)	499, 579, 651, 1085
HpyCH4IV	ACGT	1 cut(s)	720
HpyCH4V	TGCA	6 cut(s)	206, 239, 409, 514, 725, 881
HpyF10VI	GCNNNNNNNGC	2 cut(s)	770, 1057
HpyF3I	CTNAG	8 cut(s)	29, 52, 288, 354, 445, 710, 820, 1013
HpySE526I	ACGT	1 cut(s)	720
Hsp92II	CATG	7 cut(s)	20, 99, 511, 533, 817, 876, 993
Kzo9I	GATC	5 cut(s)	418, 472, 688, 744, 1160
LmnI	GCTCC	8 cut(s)	75, 371, 387, 460, 518, 563, 842, 1048
Lsp1109I	GCAGC	3 cut(s)	190, 251, 393
LweI	GCATC	1 cut(s)	609
MaeI	CTAG	1 cut(s)	1149
MaeII	ACGT	1 cut(s)	720
MaeIII	GTNAC	6 cut(s)	448, 499, 523, 569, 786, 937
MalI	GATC	5 cut(s)	420, 474, 690, 746, 1162
MboI	GATC	5 cut(s)	418, 472, 688, 744, 1160
MboII	GAAGA	6 cut(s)	545, 606, 947, 950, 993, 1103
MfeI	CAATTG	1 cut(s)	1123
MflI	RGATCY	1 cut(s)	1160
MhlI	GDGCHC	3 cut(s)	80, 549, 847
MluCI	AATT	6 cut(s)	123, 251, 792, 909, 1061, 1123
MmeI	TCCRAC	3 cut(s)	349, 876, 1009
Mph1103I	ATGCAT	1 cut(s)	883
MspI	CCGG	3 cut(s)	470, 567, 591
MspR9I	CCNGG	4 cut(s)	73, 470, 629, 840
MunI	CAATTG	1 cut(s)	1123
Mva1269I	GAATGC	1 cut(s)	883
MvaI	CCWGG	3 cut(s)	73, 629, 840
MwoI	GCNNNNNNNGC	2 cut(s)	770, 1057
NciI	CCSGG	1 cut(s)	470
NdeII	GATC	5 cut(s)	418, 472, 688, 744, 1160
NlaIII	CATG	7 cut(s)	20, 99, 511, 533, 817, 876, 993
NlaIV	GGNNCC	7 cut(s)	35, 373, 565, 634, 806, 1050, 1069
NmuCI	GTSAC	5 cut(s)	499, 523, 569, 786, 937
NsiI	ATGCAT	1 cut(s)	883
NspI	RCATGY	1 cut(s)	511
NspV	TTCGAA	1 cut(s)	1004
PasI	CCCWGGG	1 cut(s)	628
PceI	AGGCCT	1 cut(s)	352
PciI	ACATGT	1 cut(s)	507
PctI	GAATGC	1 cut(s)	883
PfoI	TCCNGGA	1 cut(s)	468
PkrI	GCNGC	5 cut(s)	114, 205, 241, 408, 625
PpuMI	RGGWCCY	1 cut(s)	804
PscI	ACATGT	1 cut(s)	507
Psp124BI	GAGCTC	2 cut(s)	80, 847
Psp5II	RGGWCCY	1 cut(s)	804
Psp6I	CCWGG	3 cut(s)	71, 627, 838
PspEI	GGTNACC	1 cut(s)	569
PspGI	CCWGG	3 cut(s)	71, 627, 838
PspN4I	GGNNCC	7 cut(s)	35, 373, 565, 634, 806, 1050, 1069
PspPI	GGNCC	2 cut(s)	804, 1067
PspPPI	RGGWCCY	1 cut(s)	804
PsrI	GAACNNNNNNTAC	2 cut(s)	846, 878
PstNI	CAGNNNCTG	1 cut(s)	452
PsuI	RGATCY	1 cut(s)	1160
RsaI	GTAC	1 cut(s)	818
RsaNI	GTAC	1 cut(s)	817
SacI	GAGCTC	2 cut(s)	80, 847
SatI	GCNGC	5 cut(s)	113, 204, 240, 407, 624
Sau3AI	GATC	5 cut(s)	418, 472, 688, 744, 1160
Sau96I	GGNCC	2 cut(s)	804, 1067
ScrFI	CCNGG	4 cut(s)	73, 470, 629, 840
SduI	GDGCHC	3 cut(s)	80, 549, 847
SfaNI	GCATC	1 cut(s)	609
SfcI	CTRYAG	1 cut(s)	575
SfuI	TTCGAA	1 cut(s)	1004
SinI	GGWCC	1 cut(s)	804
SmlI	CTYRAG	1 cut(s)	79
SmoI	CTYRAG	1 cut(s)	79
Sse9I	AATT	6 cut(s)	123, 251, 792, 909, 1061, 1123
SseBI	AGGCCT	1 cut(s)	352
SsiI	CCGC	3 cut(s)	113, 588, 624
SspMI	CTAG	1 cut(s)	1149
SstI	GAGCTC	2 cut(s)	80, 847
StuI	AGGCCT	1 cut(s)	352
StyD4I	CCNGG	4 cut(s)	71, 468, 627, 838
StyI	CCWWGG	1 cut(s)	774
TaaI	ACNGT	4 cut(s)	499, 579, 651, 1085
TaiI	ACGT	1 cut(s)	723
TaqI	TCGA	2 cut(s)	747, 1004
TasI	AATT	6 cut(s)	123, 251, 792, 909, 1061, 1123
TatI	WGTACW	1 cut(s)	816
TauI	GCSGC	2 cut(s)	115, 626
TscAI	CASTG	3 cut(s)	504, 584, 837
TseFI	GTSAC	5 cut(s)	499, 523, 569, 786, 937
TseI	GCWGC	3 cut(s)	203, 239, 406
Tsp45I	GTSAC	5 cut(s)	499, 523, 569, 786, 937
TspDTI	ATGAA	3 cut(s)	206, 546, 1094
TspRI	CASTG	3 cut(s)	504, 584, 837
VpaK11BI	GGWCC	1 cut(s)	804
XapI	RAATTY	2 cut(s)	251, 909
XceI	RCATGY	1 cut(s)	511
XspI	CTAG	1 cut(s)	1149
Zsp2I	ATGCAT	1 cut(s)	883

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.