Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0003512

Physical Location & Seq

Genomic Coordinates Forward (+)

20323954 .. 20327822

Gene Structure 3869 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1536 bp

ATGTGGGTGTTCACATTACAGATCAATCGCTTCAAAGCCAGTTCACGCAGGTTGAGCTTCGCAGTTTTGGAATCCAAATTTAATTCAGTGAAGAATCAGAATGGTAAAGTTATGGCTGGAGATTTGCCACCTCTAATGGTTAAATTAAAGGCATTTAGGGAAATGTATTCTGAGGAGGAGATCAGAGGTATCTTAAGTGCGTTGGATTCTGACTTCAGTGACGAGATTGATTTTGAATCCTTCCTTAAGGAATACCTAAGTTTGCAAGGGCAAACAACAGCAAAATCGGGTGGTTCAAAGAACTCTTCATCATTCTTGAAGGCCACCACAACCACCCTCCTTCATACAATCAGTGAATCAGAGAAAGCATCTTACGTGGCTCACATAAACAGCTATCTCGGGGATGACCCGTTTCTAAAGCAGTTTCTCCCATTAGACCCAGCTACAAATGACCTATTCCATCTTGCAAAAGATGGAGTTCTCCTCTGCAAGCTTATAAATGTTGCTGTGCCTGGGACAATAGATGAACGAGCAATTAACACCAAAAGGGTTATCAACCCGTGGGAGAGGAATGAGAACCATACTCTTTGCCTCAACTCTGCCAAGGCCATTGGCTGCACAGTGGTTAACATTGGCACGCAGGACCTGGTTGAAGGAAGACCTCATCTGCTACTGGGATTGATTTCGCAAATTATAAAGATCCAACTGTTGGCAGATCTCAACCTTAAGAAGACGCCTCAGCTTGTAGAATTGGTGGATGACAGCAGGGATGTTGAAGAGCTTTTGAGTTTACCCCCCGAGAAGGTATTGTTGAAATGGATGAATTTCCACCTCCAGAAAGCCGGCTACAAGAAACCTGTTTCAAACTTTTCTTCTGACGTGAAGGATGGAGAAGCTTATGCTTACCTACTTAATGTTCTTGCTCCAGAACACTGCAATCCCGCCACATTGGATGCCAAGCCCAATGAAAGGGCAAAGTTGGTTCTTGATCATGCCGAGAGAATGAACTGCAAAAGATATTTAACTCCGAAAGACATTATTGAGGGTTCTTCAAACTTAAATCTGGCATTTGTGGCACAAATATTCCATGAAAGGAACGGCCTCTCCACAGATAGCAAGAAGATTTCTTTTGCAGAGATGATGACAGATGATGTGCAAACATCTAGAGAAGAGAGATGCTTCCGGCTATGGATCAACAGTCTAGGAATTGTTAGTTATGTTAATAATGTTTTTGAAGATGTGAGAAATGGATGGATACTATTAGAAGTACTCGATAAGGTTTCTCCAGGATCAGTGAACTGGAAGCAAGCATCAAAGCCTCCAATTAAAATGCCATTTAGAAAAGTAGAGAATTGCAATCAAATTGTAAGCATTGGAAAGCAACTGAAATTCTCGCTGGTGAATGTCGCTGGAAATGATATTGTGCAGGGAAACAAGAAACTCATACTTGCGTTCCTATGGCAGTTGATGAGGTTTAATATGCTTCAACTTTTGAGAAATTTAATGATCGATCTCACTCCCAAGGAAAGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005856 GO:0005884 GO:0006996 GO:0007010 GO:0007015 GO:0007623 GO:0008092 GO:0008150 GO:0009987 GO:0015629 GO:0016043 GO:0022607 GO:0030029 GO:0030036 GO:0032432 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0048511 GO:0051015 GO:0051017 GO:0051639 GO:0051764 GO:0061572 GO:0071840 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

512

Amino Acids

57.73

Weight (kDa)

8.62

Isoelectric Point (pI)

35.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CH	PF00307	149 - 233	5.5e-16	Calponin homology (CH) domain
CH	PF00307	265 - 364	3.6e-23	Calponin homology (CH) domain
CH	PF00307	391 - 492	9.6e-18	Calponin homology (CH) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003512)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26700 AT4G26700 AT4G26700 AT4G26700 AT4G26700 AT4G26700 AT4G26700 AT5G55400 AT5G55400 AT5G55400
fragaria_vesca	FvH4_3g23730 FvH4_3g23730 FvH4_3g23730 FvH4_3g23730 FvH4_3g23730 FvH4_3g23730
malus_domestica	MD03G1190800.v1.1 MD04G1101600.v1.1 MD11G1207500.v1.1
prunus_persica	Prupe.4G227900_v2.0.a1
pyrus_communis	pycom03g14400 pycom03g14410 pycom11g18070
rosa_chinensis	RchiOBHm_Chr5g0041891
rosa_laevigata	RLG00000034102 RLG00000034103
rosa_multiflora	Rmu_sc0009443.1_g000014
rosa_roxburghii	Rroxscaffold_1G00038650
rosa_rugosa	Rorug05G0196900 Rorug05G0197000
rosa_samantha	Rh5AG281500 Rh5BG287100 Rh5CG318700 Rh5DG295800
rosa_wichuraiana	Rw0G001340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	497, 695
Acc36I	ACCTGC	1 cut(s)	39
AccB7I	CCANNNNNTGG	1 cut(s)	709
AciI	CCGC	1 cut(s)	942
AclWI	GGATC	3 cut(s)	694, 1199, 1297
AcsI	RAATTY	4 cut(s)	77, 823, 1388, 1498
AcuI	CTGAAG	1 cut(s)	199
AcyI	GRCGYC	1 cut(s)	734
AfaI	GTAC	1 cut(s)	1269
AfiI	CCNNNNNNNGG	4 cut(s)	709, 802, 969, 1527
AflII	CTTAAG	3 cut(s)	193, 245, 725
AjiI	CACGTC	1 cut(s)	880
AjnI	CCWGG	3 cut(s)	511, 645, 1285
AloI	GAACNNNNNNTCC	2 cut(s)	1088, 1120
AluBI	AGCT	7 cut(s)	57, 393, 443, 493, 742, 781, 896
AluI	AGCT	7 cut(s)	57, 393, 443, 493, 742, 781, 896
AlwI	GGATC	3 cut(s)	694, 1199, 1297
AlwNI	CAGNNNCTG	1 cut(s)	646
Ama87I	CYCGRG	2 cut(s)	398, 797
AoxI	GGCC	3 cut(s)	321, 606, 1099
ApeKI	GCWGC	1 cut(s)	615
ApoI	RAATTY	4 cut(s)	77, 823, 1388, 1498
AspS9I	GGNCC	1 cut(s)	643
AsuHPI	GGTGA	1 cut(s)	1411
AvaI	CYCGRG	2 cut(s)	398, 797
AvaII	GGWCC	1 cut(s)	643
BbsI	GAAGAC	2 cut(s)	664, 737
BbvCI	CCTCAGC	1 cut(s)	738
BbvI	GCAGC	1 cut(s)	602
BccI	CCATC	4 cut(s)	467, 468, 881, 1245
BceAI	ACGGC	1 cut(s)	1114
BciT130I	CCWGG	3 cut(s)	513, 647, 1287
BciVI	GTATCC	1 cut(s)	1248
BclI	TGATCA	1 cut(s)	988
BfaI	CTAG	2 cut(s)	1164, 1202
BfrI	CTTAAG	3 cut(s)	193, 245, 725
BfuAI	ACCTGC	1 cut(s)	39
BfuI	GTATCC	1 cut(s)	1248
BglII	AGATCT	1 cut(s)	715
BisI	GCNGC	1 cut(s)	616
BlsI	GCNGC	1 cut(s)	617
BmcAI	AGTACT	1 cut(s)	1269
Bme1390I	CCNGG	3 cut(s)	513, 647, 1287
Bme18I	GGWCC	1 cut(s)	643
BmeT110I	CYCGRG	2 cut(s)	398, 797
BmgBI	CACGTC	1 cut(s)	880
BmgT120I	GGNCC	1 cut(s)	643
BmrFI	CCNGG	3 cut(s)	513, 647, 1287
BmrI	ACTGGG	1 cut(s)	683
BmsI	GCATC	4 cut(s)	377, 943, 1166, 1319
BmuI	ACTGGG	1 cut(s)	683
BpiI	GAAGAC	2 cut(s)	664, 737
BplI	GAGNNNNNCTC	2 cut(s)	468, 500
BpmI	CTGGAG	4 cut(s)	138, 818, 909, 1269
Bpu10I	CCTNAGC	1 cut(s)	738
Bsa29I	ATCGAT	1 cut(s)	1509
BsaAI	YACGTR	1 cut(s)	376
BsaHI	GRCGYC	1 cut(s)	734
BsaJI	CCNNGG	4 cut(s)	512, 560, 603, 1521
BsaXI	ACNNNNNCTCC	2 cut(s)	1088, 1118
Bsc4I	CCNNNNNNNGG	4 cut(s)	709, 802, 969, 1527
Bse118I	RCCGGY	1 cut(s)	842
Bse1I	ACTGG	3 cut(s)	39, 678, 1304
BseBI	CCWGG	3 cut(s)	513, 647, 1287
BseCI	ATCGAT	1 cut(s)	1509
BseDI	CCNNGG	4 cut(s)	512, 560, 603, 1521
BseGI	GGATG	7 cut(s)	409, 763, 775, 825, 892, 958, 1256
BseLI	CCNNNNNNNGG	4 cut(s)	709, 802, 969, 1527
BseMII	CTCAG	2 cut(s)	162, 752
BseNI	ACTGG	3 cut(s)	39, 678, 1304
BseRI	GAGGAG	3 cut(s)	188, 191, 473
BseXI	GCAGC	1 cut(s)	602
BseYI	CCCAGC	1 cut(s)	439
BsgI	GTGCAG	2 cut(s)	601, 1445
BshFI	GGCC	3 cut(s)	323, 608, 1101
BshVI	ATCGAT	1 cut(s)	1509
BsiHKCI	CYCGRG	2 cut(s)	398, 797
BsiSI	CCGG	2 cut(s)	843, 1183
BslFI	GGGAC	1 cut(s)	529
BslI	CCNNNNNNNGG	4 cut(s)	709, 802, 969, 1527
BsmFI	GGGAC	1 cut(s)	529
BsnI	GGCC	3 cut(s)	323, 608, 1101
BsoBI	CYCGRG	2 cut(s)	398, 797
Bsp143I	GATC	9 cut(s)	21, 180, 699, 715, 988, 1191, 1289, 1506, 1510
BspACI	CCGC	1 cut(s)	942
BspANI	GGCC	3 cut(s)	323, 608, 1101
BspCNI	CTCAG	2 cut(s)	163, 751
BspDI	ATCGAT	1 cut(s)	1509
BspMI	ACCTGC	1 cut(s)	39
BspPI	GGATC	3 cut(s)	694, 1199, 1297
BspQI	GCTCTTC	1 cut(s)	771
BspTI	CTTAAG	3 cut(s)	193, 245, 725
BsrFI	RCCGGY	1 cut(s)	842
BsrI	ACTGG	3 cut(s)	39, 678, 1304
BssAI	RCCGGY	1 cut(s)	842
BssECI	CCNNGG	4 cut(s)	512, 560, 603, 1521
BssMI	GATC	9 cut(s)	21, 180, 699, 715, 988, 1191, 1289, 1506, 1510
BssNI	GRCGYC	1 cut(s)	734
BssT1I	CCWWGG	2 cut(s)	603, 1521
Bst2UI	CCWGG	3 cut(s)	513, 647, 1287
Bst4CI	ACNGT	3 cut(s)	622, 708, 1199
Bst6I	CTCTTC	3 cut(s)	310, 771, 1164
BstACI	GRCGYC	1 cut(s)	734
BstAFI	CTTAAG	3 cut(s)	193, 245, 725
BstBAI	YACGTR	1 cut(s)	376
BstC8I	GCNNGC	4 cut(s)	491, 638, 844, 1308
BstDEI	CTNAG	3 cut(s)	171, 257, 738
BstDSI	CCRYGG	1 cut(s)	560
BstF5I	GGATG	7 cut(s)	409, 763, 775, 825, 892, 958, 1256
BstKTI	GATC	9 cut(s)	24, 183, 702, 718, 991, 1194, 1292, 1509, 1513
BstMBI	GATC	9 cut(s)	21, 180, 699, 715, 988, 1191, 1289, 1506, 1510
BstMWI	GCNNNNNNNGC	2 cut(s)	54, 1073
BstNI	CCWGG	3 cut(s)	513, 647, 1287
BstSCI	CCNGG	3 cut(s)	511, 645, 1285
BstV1I	GCAGC	1 cut(s)	602
BstV2I	GAAGAC	2 cut(s)	664, 737
BstX2I	RGATCY	2 cut(s)	699, 715
BstYI	RGATCY	2 cut(s)	699, 715
Bsu15I	ATCGAT	1 cut(s)	1509
BsuI	GTATCC	1 cut(s)	1248
BsuRI	GGCC	3 cut(s)	323, 608, 1101
BsuTUI	ATCGAT	1 cut(s)	1509
BtgI	CCRYGG	1 cut(s)	560
BtrI	CACGTC	1 cut(s)	880
BtsCI	GGATG	7 cut(s)	409, 763, 775, 825, 892, 958, 1256
BtsI	GCAGTG	1 cut(s)	931
BtsIMutI	CAGTG	6 cut(s)	93, 223, 358, 627, 931, 1299
BveI	ACCTGC	1 cut(s)	39
Cac8I	GCNNGC	4 cut(s)	491, 638, 844, 1308
CaiI	CAGNNNCTG	1 cut(s)	646
Cfr10I	RCCGGY	1 cut(s)	842
Cfr13I	GGNCC	1 cut(s)	643
ClaI	ATCGAT	1 cut(s)	1509
CseI	GACGC	1 cut(s)	742
CsiI	ACCWGGT	1 cut(s)	645
Csp6I	GTAC	1 cut(s)	1268
CviAII	CATG	2 cut(s)	992, 1088
CviQI	GTAC	1 cut(s)	1268
DdeI	CTNAG	3 cut(s)	171, 257, 738
DpnI	GATC	9 cut(s)	23, 182, 701, 717, 990, 1193, 1291, 1508, 1512
DpnII	GATC	9 cut(s)	21, 180, 699, 715, 988, 1191, 1289, 1506, 1510
Eam1104I	CTCTTC	3 cut(s)	310, 771, 1164
EarI	CTCTTC	3 cut(s)	310, 771, 1164
Eco130I	CCWWGG	2 cut(s)	603, 1521
Eco47I	GGWCC	1 cut(s)	643
Eco57I	CTGAAG	1 cut(s)	199
Eco88I	CYCGRG	2 cut(s)	398, 797
EcoO109I	RGGNCCY	1 cut(s)	643
EcoRII	CCWGG	3 cut(s)	511, 645, 1285
EcoT14I	CCWWGG	2 cut(s)	603, 1521
ErhI	CCWWGG	2 cut(s)	603, 1521
FaeI	CATG	2 cut(s)	995, 1091
FaqI	GGGAC	1 cut(s)	529
FatI	CATG	2 cut(s)	991, 1087
FauI	CCCGC	1 cut(s)	949
FbaI	TGATCA	1 cut(s)	988
Fnu4HI	GCNGC	1 cut(s)	616
FokI	GGATG	7 cut(s)	416, 770, 782, 832, 899, 965, 1263
Fsp4HI	GCNGC	1 cut(s)	616
FspBI	CTAG	2 cut(s)	1164, 1202
GluI	GCNGC	1 cut(s)	616
GsaI	CCCAGC	1 cut(s)	443
GsuI	CTGGAG	4 cut(s)	138, 818, 909, 1269
HaeIII	GGCC	3 cut(s)	323, 608, 1101
HapII	CCGG	2 cut(s)	843, 1183
HgaI	GACGC	1 cut(s)	742
Hin1I	GRCGYC	1 cut(s)	734
Hin1II	CATG	2 cut(s)	995, 1091
HincII	GTYRAC	1 cut(s)	628
HindII	GTYRAC	1 cut(s)	628
HindIII	AAGCTT	2 cut(s)	491, 894
HinfI	GANTC	5 cut(s)	71, 94, 206, 236, 356
HpaI	GTTAAC	1 cut(s)	628
HpaII	CCGG	2 cut(s)	843, 1183
HphI	GGTGA	1 cut(s)	1411
Hpy166II	GTNNAC	5 cut(s)	12, 44, 628, 791, 1297
Hpy188I	TCNGA	7 cut(s)	99, 172, 185, 211, 361, 877, 1029
Hpy188III	TCNNGA	5 cut(s)	316, 835, 926, 986, 1164
Hpy8I	GTNNAC	5 cut(s)	12, 44, 628, 791, 1297
HpyAV	CCTTC	6 cut(s)	250, 313, 350, 647, 796, 877
HpyCH4III	ACNGT	3 cut(s)	622, 708, 1199
HpyCH4IV	ACGT	2 cut(s)	375, 879
HpyF10VI	GCNNNNNNNGC	2 cut(s)	54, 1073
HpyF3I	CTNAG	3 cut(s)	171, 257, 738
HpySE526I	ACGT	2 cut(s)	375, 879
Hsp92I	GRCGYC	1 cut(s)	734
Hsp92II	CATG	2 cut(s)	995, 1091
KroI	GCCGGC	1 cut(s)	842
KroNI	GCCGGC	1 cut(s)	844
Ksp22I	TGATCA	1 cut(s)	988
KspAI	GTTAAC	1 cut(s)	628
Kzo9I	GATC	9 cut(s)	21, 180, 699, 715, 988, 1191, 1289, 1506, 1510
LguI	GCTCTTC	1 cut(s)	771
LmnI	GCTCC	1 cut(s)	928
Lsp1109I	GCAGC	1 cut(s)	602
LweI	GCATC	4 cut(s)	377, 943, 1166, 1319
MabI	ACCWGGT	1 cut(s)	645
MaeI	CTAG	2 cut(s)	1164, 1202
MaeII	ACGT	2 cut(s)	375, 879
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	9 cut(s)	23, 182, 701, 717, 990, 1193, 1291, 1508, 1512
MboI	GATC	9 cut(s)	21, 180, 699, 715, 988, 1191, 1289, 1506, 1510
MflI	RGATCY	2 cut(s)	699, 715
MmeI	TCCRAC	2 cut(s)	183, 727
MroNI	GCCGGC	1 cut(s)	842
MspCI	CTTAAG	3 cut(s)	193, 245, 725
MspI	CCGG	2 cut(s)	843, 1183
MspR9I	CCNGG	3 cut(s)	513, 647, 1287
MvaI	CCWGG	3 cut(s)	513, 647, 1287
MwoI	GCNNNNNNNGC	2 cut(s)	54, 1073
NaeI	GCCGGC	1 cut(s)	844
NdeII	GATC	9 cut(s)	21, 180, 699, 715, 988, 1191, 1289, 1506, 1510
NgoMIV	GCCGGC	1 cut(s)	842
NlaIII	CATG	2 cut(s)	995, 1091
NmeAIII	GCCGAG	1 cut(s)	1021
NmuCI	GTSAC	1 cut(s)	218
PciSI	GCTCTTC	1 cut(s)	771
PdiI	GCCGGC	1 cut(s)	844
PfeI	GAWTC	5 cut(s)	71, 94, 206, 236, 356
PflMI	CCANNNNNTGG	1 cut(s)	709
PfoI	TCCNGGA	1 cut(s)	1285
PkrI	GCNGC	1 cut(s)	617
Ppu21I	YACGTR	1 cut(s)	376
PpuMI	RGGWCCY	1 cut(s)	643
PsiI	TTATAA	2 cut(s)	497, 695
Psp5II	RGGWCCY	1 cut(s)	643
Psp6I	CCWGG	3 cut(s)	511, 645, 1285
PspFI	CCCAGC	1 cut(s)	439
PspGI	CCWGG	3 cut(s)	511, 645, 1285
PspPI	GGNCC	1 cut(s)	643
PspPPI	RGGWCCY	1 cut(s)	643
PstNI	CAGNNNCTG	1 cut(s)	646
PsuI	RGATCY	2 cut(s)	699, 715
RsaI	GTAC	1 cut(s)	1269
RsaNI	GTAC	1 cut(s)	1268
SapI	GCTCTTC	1 cut(s)	771
SatI	GCNGC	1 cut(s)	616
Sau3AI	GATC	9 cut(s)	21, 180, 699, 715, 988, 1191, 1289, 1506, 1510
Sau96I	GGNCC	1 cut(s)	643
ScaI	AGTACT	1 cut(s)	1269
ScrFI	CCNGG	3 cut(s)	513, 647, 1287
SexAI	ACCWGGT	1 cut(s)	645
SfaNI	GCATC	4 cut(s)	377, 943, 1166, 1319
SinI	GGWCC	1 cut(s)	643
SmlI	CTYRAG	3 cut(s)	193, 245, 725
SmoI	CTYRAG	3 cut(s)	193, 245, 725
SsiI	CCGC	1 cut(s)	942
SspI	AATATT	1 cut(s)	1083
SspMI	CTAG	2 cut(s)	1164, 1202
StyD4I	CCNGG	3 cut(s)	511, 645, 1285
StyI	CCWWGG	2 cut(s)	603, 1521
TaaI	ACNGT	3 cut(s)	622, 708, 1199
TaiI	ACGT	2 cut(s)	378, 882
TaqI	TCGA	2 cut(s)	1272, 1509
TatI	WGTACW	1 cut(s)	1267
TfiI	GAWTC	5 cut(s)	71, 94, 206, 236, 356
TscAI	CASTG	6 cut(s)	93, 223, 358, 627, 938, 1299
TseFI	GTSAC	1 cut(s)	218
TseI	GCWGC	1 cut(s)	615
Tsp45I	GTSAC	1 cut(s)	218
TspDTI	ATGAA	7 cut(s)	297, 332, 540, 836, 981, 1019, 1104
TspRI	CASTG	6 cut(s)	93, 223, 358, 627, 938, 1299
Van91I	CCANNNNNTGG	1 cut(s)	709
Vha464I	CTTAAG	3 cut(s)	193, 245, 725
VpaK11BI	GGWCC	1 cut(s)	643
XapI	RAATTY	4 cut(s)	77, 823, 1388, 1498
XbaI	TCTAGA	1 cut(s)	1163
XspI	CTAG	2 cut(s)	1164, 1202
ZrmI	AGTACT	1 cut(s)	1269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.