pycom11g19810

Early nodulin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0014590
Physical Location & Seq
Reverse (-)
22324706 .. 22326424
1719 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 771 bp
ATGCTTTGCATTGAGATATTCCATGCAACCCCTACAAAAACCCCTATCAGAACACCGTTCATTCCACCCCATTTTTCTTCGTCTTCCAAAAACGACAGGGAAATACAAGCAATATTTGGTCCAACAATGGCCAACCAAATTCACAAAAATAATATTAATGCAGTTTTTGTTGTGGGGATTGTATGCGTGACGCTGTTGATACAGAAGAGTGGTGCAACTGACTTTGCAATTGGAGGCTCAAAGGGCTGGTGTGTTCCTGATTCTTCTGTTCACTATAATCAATGGGCGGAAAGAAACAGGTTTCAAATCGGAGACTCCATTGTGTTCCACTACCCTCCTGGCCAAGACTCAGTGCTTTTAGTAACCCAGGACGACTACACCAACTGCAACACGGATTCACCTACGGCTAAGAAATACACCGATGGCCACACAGTCTTCAAGTTCAACCAATCCGGGCCATTCTACTTCATCAGTGGGAACAAAGATAAATGTCAGAAAAATGAGAAGGTGGTAGTGATTGTCTTGGCAGATAGAAACAGAAATGCAAAACCTCCCTCATCTTCAAACTCAAAAGATATGATCCCATCTCCAGCTCCTTCTGATGAAGCGTCTCCACCTCCACCGCCGTCAGGGACTACTGAGATTAACCCTACTCCTGCTCCTGAAGGTGAAACACCTCCTCCACCTCCAAACGCGGCTTCTTCAGTTTTCATGAGTTTTATTGGGTCCGTCGGAGCATTTGCCGCATCCTCAACACTTTTACTACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

257

Amino Acids

27.61

Weight (kDa)

6.58

Isoelectric Point (pI)

50.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 83 - 166 3.1e-21 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014590)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20570
fragaria_vesca FvH4_3g21980
malus_domestica MD03G1209600.v1.1 MD11G1224400.v1.1
prunus_persica Prupe.4G205500_v2.0.a1
pyrus_communis pycom03g15840 pycom11g19810
rosa_chinensis RchiOBHm_Chr5g0037831
rosa_laevigata RLG00000033815
rosa_multiflora Rmu_sc0005416.1_g000014
rosa_roxburghii Rroxscaffold_1G00043090
rosa_rugosa Rorug05G0168000
rosa_samantha Rh5AG256800 Rh5BG259200 Rh5CG292200 Rh5DG269100
rosa_wichuraiana Rw5G023810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 695
AciI CCGC 4 cut(s) 287, 623, 695, 744
AclWI GGATC 1 cut(s) 574
AcoI YGGCCR 3 cut(s) 129, 340, 424
AcsI RAATTY 1 cut(s) 138
AcuI CTGAAG 2 cut(s) 684, 687
AfiI CCNNNNNNNGG 1 cut(s) 629
AgsI TTSAA 4 cut(s) 305, 439, 445, 564
AjnI CCWGG 2 cut(s) 337, 366
AjuI GAANNNNNNNTTGG 2 cut(s) 682, 714
AluBI AGCT 1 cut(s) 593
AluI AGCT 1 cut(s) 593
Alw26I GTCTC 2 cut(s) 306, 615
AlwI GGATC 1 cut(s) 574
AoxI GGCC 4 cut(s) 129, 340, 424, 455
ApoI RAATTY 1 cut(s) 138
AseI ATTAAT 1 cut(s) 156
AspS9I GGNCC 3 cut(s) 119, 455, 726
AsuC2I CCSGG 1 cut(s) 454
AsuHPI GGTGA 2 cut(s) 390, 680
AvaII GGWCC 2 cut(s) 119, 726
BalI TGGCCA 3 cut(s) 131, 342, 426
BbsI GAAGAC 2 cut(s) 75, 427
BccI CCATC 2 cut(s) 416, 592
BceAI ACGGC 2 cut(s) 420, 610
BciT130I CCWGG 2 cut(s) 339, 368
BcnI CCSGG 1 cut(s) 454
BcoDI GTCTC 2 cut(s) 306, 615
BisI GCNGC 2 cut(s) 696, 744
BlsI GCNGC 2 cut(s) 697, 745
Bme1390I CCNGG 3 cut(s) 339, 368, 454
Bme18I GGWCC 2 cut(s) 119, 726
BmgT120I GGNCC 3 cut(s) 119, 455, 726
BmiI GGNNCC 1 cut(s) 727
BmrFI CCNGG 3 cut(s) 339, 368, 454
BmsI GCATC 1 cut(s) 755
BpiI GAAGAC 2 cut(s) 75, 427
BpmI CTGGAG 1 cut(s) 573
BpuMI CCSGG 1 cut(s) 454
BsaJI CCNNGG 1 cut(s) 366
BsaXI ACNNNNNCTCC 4 cut(s) 643, 664, 673, 694
Bsc4I CCNNNNNNNGG 1 cut(s) 629
BseBI CCWGG 2 cut(s) 339, 368
BseDI CCNNGG 1 cut(s) 366
BseGI GGATG 1 cut(s) 746
BseLI CCNNNNNNNGG 1 cut(s) 629
BseMII CTCAG 2 cut(s) 363, 630
BseRI GAGGAG 1 cut(s) 669
Bsh1236I CGCG 1 cut(s) 695
BshFI GGCC 4 cut(s) 131, 342, 426, 457
BsiSI CCGG 1 cut(s) 453
BslFI GGGAC 1 cut(s) 646
BslI CCNNNNNNNGG 1 cut(s) 629
BsmAI GTCTC 2 cut(s) 306, 615
BsmBI CGTCTC 1 cut(s) 615
BsmFI GGGAC 1 cut(s) 646
BsnI GGCC 4 cut(s) 131, 342, 426, 457
Bsp143I GATC 1 cut(s) 579
BspACI CCGC 4 cut(s) 287, 623, 695, 744
BspANI GGCC 4 cut(s) 131, 342, 426, 457
BspCNI CTCAG 2 cut(s) 362, 631
BspFNI CGCG 1 cut(s) 695
BspHI TCATGA 1 cut(s) 711
BspLI GGNNCC 1 cut(s) 727
BspPI GGATC 1 cut(s) 574
BssECI CCNNGG 1 cut(s) 366
BssMI GATC 1 cut(s) 579
Bst2UI CCWGG 2 cut(s) 339, 368
Bst4CI ACNGT 2 cut(s) 57, 433
Bst6I CTCTTC 1 cut(s) 200
BstDEI CTNAG 3 cut(s) 349, 408, 639
BstF5I GGATG 1 cut(s) 746
BstFNI CGCG 1 cut(s) 695
BstKTI GATC 1 cut(s) 582
BstMAI GTCTC 2 cut(s) 306, 615
BstMBI GATC 1 cut(s) 579
BstMWI GCNNNNNNNGC 2 cut(s) 243, 743
BstNI CCWGG 2 cut(s) 339, 368
BstSCI CCNGG 3 cut(s) 337, 366, 452
BstUI CGCG 1 cut(s) 695
BstV2I GAAGAC 2 cut(s) 75, 427
BsuRI GGCC 4 cut(s) 131, 342, 426, 457
BtsCI GGATG 1 cut(s) 746
BtsIMutI CAGTG 2 cut(s) 357, 478
CciI TCATGA 1 cut(s) 711
Cfr13I GGNCC 3 cut(s) 119, 455, 726
CseI GACGC 2 cut(s) 199, 597
CviAII CATG 2 cut(s) 23, 712
CviJI RGCY 9 cut(s) 131, 237, 246, 342, 407, 426, 457, 593, 698
CviKI_1 RGCY 9 cut(s) 131, 237, 246, 342, 407, 426, 457, 593, 698
DdeI CTNAG 3 cut(s) 349, 408, 639
DpnI GATC 1 cut(s) 581
DpnII GATC 1 cut(s) 579
EaeI YGGCCR 3 cut(s) 129, 340, 424
Eam1104I CTCTTC 1 cut(s) 200
EarI CTCTTC 1 cut(s) 200
EciI GGCGGA 1 cut(s) 302
Eco47I GGWCC 2 cut(s) 119, 726
Eco57I CTGAAG 2 cut(s) 684, 687
EcoRII CCWGG 2 cut(s) 337, 366
Esp3I CGTCTC 1 cut(s) 615
FaeI CATG 2 cut(s) 26, 715
FaiI YATR 5 cut(s) 24, 184, 276, 578, 713
FaqI GGGAC 1 cut(s) 646
FatI CATG 2 cut(s) 22, 711
Fnu4HI GCNGC 2 cut(s) 696, 744
FokI GGATG 1 cut(s) 733
Fsp4HI GCNGC 2 cut(s) 696, 744
GluI GCNGC 2 cut(s) 696, 744
GsuI CTGGAG 1 cut(s) 573
HaeIII GGCC 4 cut(s) 131, 342, 426, 457
HapII CCGG 1 cut(s) 453
HgaI GACGC 2 cut(s) 199, 597
Hin1II CATG 2 cut(s) 26, 715
HinfI GANTC 4 cut(s) 260, 314, 347, 395
HpaII CCGG 1 cut(s) 453
HphI GGTGA 2 cut(s) 390, 680
Hpy166II GTNNAC 1 cut(s) 271
Hpy188I TCNGA 5 cut(s) 50, 311, 495, 601, 734
Hpy188III TCNNGA 3 cut(s) 257, 662, 712
Hpy8I GTNNAC 1 cut(s) 271
Hpy99I CGWCG 1 cut(s) 734
HpyAV CCTTC 3 cut(s) 499, 606, 659
HpyCH4III ACNGT 2 cut(s) 57, 433
HpyCH4V TGCA 7 cut(s) 9, 26, 161, 215, 227, 387, 545
HpyF10VI GCNNNNNNNGC 2 cut(s) 243, 743
HpyF3I CTNAG 3 cut(s) 349, 408, 639
Hsp92II CATG 2 cut(s) 26, 715
Kzo9I GATC 1 cut(s) 579
LmnI GCTCC 3 cut(s) 598, 664, 734
LweI GCATC 1 cut(s) 755
MaeIII GTNAC 2 cut(s) 187, 361
MalI GATC 1 cut(s) 581
MboI GATC 1 cut(s) 579
MboII GAAGA 7 cut(s) 69, 75, 217, 255, 427, 552, 693
MfeI CAATTG 1 cut(s) 228
MlsI TGGCCA 3 cut(s) 131, 342, 426
MluCI AATT 2 cut(s) 138, 228
MluNI TGGCCA 3 cut(s) 131, 342, 426
MlyI GAGTC 2 cut(s) 308, 341
MmeI TCCRAC 2 cut(s) 146, 712
MnlI CCTC 9 cut(s) 227, 345, 561, 565, 627, 687, 690, 696, 760
Mox20I TGGCCA 3 cut(s) 131, 342, 426
MscI TGGCCA 3 cut(s) 131, 342, 426
MseI TTAA 2 cut(s) 156, 645
Msp20I TGGCCA 3 cut(s) 131, 342, 426
MspI CCGG 1 cut(s) 453
MspR9I CCNGG 3 cut(s) 339, 368, 454
MunI CAATTG 1 cut(s) 228
MvaI CCWGG 2 cut(s) 339, 368
MvnI CGCG 1 cut(s) 695
MwoI GCNNNNNNNGC 2 cut(s) 243, 743
NciI CCSGG 1 cut(s) 454
NdeII GATC 1 cut(s) 579
NlaIII CATG 2 cut(s) 26, 715
NlaIV GGNNCC 1 cut(s) 727
NmuCI GTSAC 1 cut(s) 187
PagI TCATGA 1 cut(s) 711
PfeI GAWTC 2 cut(s) 260, 395
PkrI GCNGC 2 cut(s) 697, 745
PleI GAGTC 2 cut(s) 308, 341
PpsI GAGTC 2 cut(s) 308, 341
PshBI ATTAAT 1 cut(s) 156
Psp6I CCWGG 2 cut(s) 337, 366
PspGI CCWGG 2 cut(s) 337, 366
PspN4I GGNNCC 1 cut(s) 727
PspPI GGNCC 3 cut(s) 119, 455, 726
SaqAI TTAA 2 cut(s) 156, 645
SatI GCNGC 2 cut(s) 696, 744
Sau3AI GATC 1 cut(s) 579
Sau96I GGNCC 3 cut(s) 119, 455, 726
SchI GAGTC 2 cut(s) 308, 341
ScrFI CCNGG 3 cut(s) 339, 368, 454
SetI ASST 9 cut(s) 302, 403, 510, 553, 595, 619, 670, 679, 688
SfaNI GCATC 1 cut(s) 755
SinI GGWCC 2 cut(s) 119, 726
Sse9I AATT 2 cut(s) 138, 228
SsiI CCGC 4 cut(s) 287, 623, 695, 744
SspI AATATT 2 cut(s) 114, 154
StyD4I CCNGG 3 cut(s) 337, 366, 452
TaaI ACNGT 2 cut(s) 57, 433
TasI AATT 2 cut(s) 138, 228
TauI GCSGC 2 cut(s) 698, 746
TfiI GAWTC 2 cut(s) 260, 395
Tru1I TTAA 2 cut(s) 156, 645
Tru9I TTAA 2 cut(s) 156, 645
TscAI CASTG 2 cut(s) 357, 478
TseFI GTSAC 1 cut(s) 187
Tsp45I GTSAC 1 cut(s) 187
TspDTI ATGAA 4 cut(s) 49, 457, 618, 700
TspGWI ACGGA 2 cut(s) 407, 718
TspRI CASTG 2 cut(s) 357, 478
VpaK11BI GGWCC 2 cut(s) 119, 726
VspI ATTAAT 1 cut(s) 156
XapI RAATTY 1 cut(s) 138
XcmI CCANNNNNNNNNTGG 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.