Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0008288

Physical Location & Seq

Genomic Coordinates Forward (+)

22437375 .. 22437638

Gene Structure 264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGTGTATTCGTATGTGTCACATAACGCAGGCCTTGAGCAATGGCATATACAAGAGCATCAAACACCGAGTGGTTACCGGACAAGAAGTTGAGAGGTTTTCTGTGGCATATTTCTACTGCCCCTCCTACGATGTAGTGGTCCGAAGCTGCGGTGATGAACCATCAACTTATAGGCAGTTCACTTTGAGGGAGTATAAACTCCAAACTCAAATTGACGTTCAGGAAACTGGTGAGAAAGTAGGGCTCTCAAGATTTCTCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009685 GO:0009987 GO:0010817 GO:0016101 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0045543 GO:0050896 GO:0051213 GO:0052635 GO:0055114 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

88

Amino Acids

10.12

Weight (kDa)

8.4

Isoelectric Point (pI)

42.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	9 - 41	1.6e-06	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50960
fragaria_vesca	FvH4_3g21910
malus_domestica	MD03G1210700.v1.1 MD11G1225300.v1.1 MD11G1225400.v1.1
prunus_persica	Prupe.4G204600_v2.0.a1 Prupe.4G204600_v2.0.a1 Prupe.4G204600_v2.0.a1 Prupe.4G204600_v2.0.a1 Prupe.4G204600_v2.0.a1
pyrus_communis	pycom03g15930 pycom11g19890
rosa_chinensis	RchiOBHm_Chr5g0037711
rosa_laevigata	RLG00000033804
rosa_multiflora	Rmu_sc0006558.1_g000028
rosa_roxburghii	Rroxscaffold_1G00043190
rosa_rugosa	Rorug05G0166500 Rorug05G0166600
rosa_samantha	Rh5AG256000 Rh5BG258100 Rh5CG291500 Rh5DG267600
rosa_wichuraiana	Rw5G023730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	150
AdeI	CACNNNGTG	1 cut(s)	70
AluBI	AGCT	1 cut(s)	147
AluI	AGCT	1 cut(s)	147
AoxI	GGCC	1 cut(s)	30
ApeKI	GCWGC	1 cut(s)	147
AspS9I	GGNCC	1 cut(s)	139
AsuHPI	GGTGA	2 cut(s)	164, 242
AvaII	GGWCC	1 cut(s)	139
BanII	GRGCYC	1 cut(s)	246
BbvI	GCAGC	1 cut(s)	134
BccI	CCATC	1 cut(s)	169
BisI	GCNGC	1 cut(s)	148
BlsI	GCNGC	1 cut(s)	149
Bme18I	GGWCC	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	139
BmsI	GCATC	1 cut(s)	66
BpuEI	CTTGAG	2 cut(s)	55, 232
BsaWI	WCCGGW	1 cut(s)	77
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bse1I	ACTGG	1 cut(s)	232
Bse3DI	GCAATG	1 cut(s)	46
BseMI	GCAATG	1 cut(s)	46
BseNI	ACTGG	1 cut(s)	232
BseXI	GCAGC	1 cut(s)	134
BshFI	GGCC	1 cut(s)	32
BsiSI	CCGG	1 cut(s)	78
BsnI	GGCC	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	246
BspACI	CCGC	1 cut(s)	150
BspANI	GGCC	1 cut(s)	32
BsrDI	GCAATG	1 cut(s)	46
BsrI	ACTGG	1 cut(s)	232
BstC8I	GCNNGC	1 cut(s)	30
BstEII	GGTNACC	1 cut(s)	73
BstPI	GGTNACC	1 cut(s)	73
BstV1I	GCAGC	1 cut(s)	134
BsuRI	GGCC	1 cut(s)	32
Cac8I	GCNNGC	1 cut(s)	30
Cfr13I	GGNCC	1 cut(s)	139
CviJI	RGCY	3 cut(s)	32, 147, 244
CviKI_1	RGCY	3 cut(s)	32, 147, 244
DraIII	CACNNNGTG	1 cut(s)	70
Eco147I	AGGCCT	1 cut(s)	32
Eco24I	GRGCYC	1 cut(s)	246
Eco47I	GGWCC	1 cut(s)	139
Eco91I	GGTNACC	1 cut(s)	73
EcoO65I	GGTNACC	1 cut(s)	73
EcoT38I	GRGCYC	1 cut(s)	246
FaiI	YATR	7 cut(s)	14, 23, 47, 49, 109, 171, 195
Fnu4HI	GCNGC	1 cut(s)	148
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	1 cut(s)	148
GluI	GCNGC	1 cut(s)	148
HaeIII	GGCC	1 cut(s)	32
HapII	CCGG	1 cut(s)	78
HpaII	CCGG	1 cut(s)	78
HphI	GGTGA	2 cut(s)	164, 242
Hpy166II	GTNNAC	1 cut(s)	180
Hpy188I	TCNGA	1 cut(s)	143
Hpy188III	TCNNGA	2 cut(s)	221, 249
Hpy8I	GTNNAC	1 cut(s)	180
HpyCH4IV	ACGT	1 cut(s)	216
HpySE526I	ACGT	1 cut(s)	216
LpnPI	CCDG	4 cut(s)	14, 91, 206, 213
Lsp1109I	GCAGC	1 cut(s)	134
LweI	GCATC	1 cut(s)	66
MaeII	ACGT	1 cut(s)	216
MaeIII	GTNAC	2 cut(s)	17, 73
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	1 cut(s)	210
MnlI	CCTC	3 cut(s)	87, 133, 180
MspI	CCGG	1 cut(s)	78
NmuCI	GTSAC	1 cut(s)	17
PceI	AGGCCT	1 cut(s)	32
PkrI	GCNGC	1 cut(s)	149
PspEI	GGTNACC	1 cut(s)	73
PspPI	GGNCC	1 cut(s)	139
SatI	GCNGC	1 cut(s)	148
Sau96I	GGNCC	1 cut(s)	139
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	3 cut(s)	98, 149, 219
SfaNI	GCATC	1 cut(s)	66
SgeI	CNNG	8 cut(s)	41, 46, 64, 80, 90, 95, 233, 240
SinI	GGWCC	1 cut(s)	139
SmlI	CTYRAG	2 cut(s)	34, 247
SmoI	CTYRAG	2 cut(s)	34, 247
Sse9I	AATT	1 cut(s)	210
SseBI	AGGCCT	1 cut(s)	32
SsiI	CCGC	1 cut(s)	150
StuI	AGGCCT	1 cut(s)	32
TaiI	ACGT	1 cut(s)	219
TasI	AATT	1 cut(s)	210
TseFI	GTSAC	1 cut(s)	17
TseI	GCWGC	1 cut(s)	147
Tsp45I	GTSAC	1 cut(s)	17
TspDTI	ATGAA	1 cut(s)	171
VpaK11BI	GGWCC	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.