Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0013111

Physical Location & Seq

Genomic Coordinates Forward (+)

22577361 .. 22578928

Gene Structure 1568 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGTCACACTTCTTGAGCAAAGAACCCGAAATGCCAAAATCCAAGAGTACTTGTACCGGCATGTAGCGTCAAGCAGCATACCTAAACAGCTTCACTGCCTAGCCCTGAGGTTGGCCAACGAGCACGCCTCCAATGCAGCTGCTCGCCTGCAGCTCCCTTCTGCTGAACTCGTCCCTGCCCTCGTCGACAACTCCTACTACCACTTTGTCCTTGCTTCCGACAATGTGCTTGCTGCCTCCGTTGTTGCCACGTCCCTTGTCCGCAACTCATTGCGCCCTCACAAAGTTGTCCTCCACATTATCACAGACAGGAAGACATATTACCCGATGCAAGCGTGGTTTTCTCTGCATTCGTTGTCACCTGCCATAATTGAGGTCAAGGCGTTGCACCATTTCGATTGGTTTACAAAGGGGAAGGTGCCAGTTTTGGAAGCAATGGAGAAAGACCAAAGGGTGAGGTCGCAGTTTAGAGGCGGGTCATCGGCCATTGTGAAGAATAATACTGAGAAGCCTAATGTTATTGCAGCTAAGCTGCAAGCACTTAGTCCCAAGTACAACTCACTGATGAATCATATCAGAATACATCTACCCGAGTTGTTTCCTGGTCTTGATAAGATAGTGTTCTTGGACGACGACATAGTAGTTCAAACTGATCTTTCACCGCTATGGGATATCGAAATGAACGGAAAGGTCAATGGAGCAGTTGAGACATGCAACGGAGAAGATAACTTTGTGATGTCAAAGCGGTATAGGAGTTATCTGAACTTCTCTCATCCTTTGATATCAAAGAATTTCGACCCCAATGCATGTGCCTGGGCTTATGGCATGAACATCTTCGACCTAGATGCTTGGAGAAAAACCAACATAAGCTTTACGTACCACCATTGGCTTGAACAGAACTTGAAATCAGACCTGAGCCTTTGGCACCTAGGAACGTTGCCCCCCGGCCTAATAGCATTCCACGGTCATGTCCAAGTTATTGATCCGTTCTGGCACATGTTGGGACTGGGATATCAGGAAAACACAAGTTCTGCTGATGTAAAGAGTGCTGGTGTCATCCATTACAACGGGAGAGCAAAGCCCTGGCTAGAAATTGCATTTCCAAAACTTCGGCCATTTTGGGCGAAATATGTCGATTTCTCAGATAAATTCATCAAGAGCTGTCATATCATGGCAACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009987 GO:0010383 GO:0010410 GO:0010413 GO:0010417 GO:0012505 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045491 GO:0045492 GO:0047262 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

394

Amino Acids

44.74

Weight (kDa)

8.95

Isoelectric Point (pI)

41.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_8	PF01501	66 - 365	1.5e-72	Glycosyl transferase family 8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54690
fragaria_vesca	FvH4_3g21730
malus_domestica	MD03G1212400.v1.1 MD11G1227600.v1.1
prunus_persica	Prupe.4G201700_v2.0.a1 Prupe.4G201700_v2.0.a1
pyrus_communis	pycom03g16110 pycom11g20030
rosa_chinensis	RchiOBHm_Chr5g0037221
rosa_laevigata	RLG00000033766
rosa_multiflora	Rmu_sc0006633.1_g000005 Rmu_sc0022939.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043750
rosa_rugosa	Rorug05G0163700
rosa_samantha	Rh5AG253400 Rh5CG288000 Rh5DG263800
rosa_wichuraiana	Rw5G023410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	370
Acc36I	ACCTGC	1 cut(s)	370
AccB1I	GGYRCC	2 cut(s)	418, 924
AccI	GTMKAC	1 cut(s)	186
AciI	CCGC	4 cut(s)	262, 474, 662, 745
AclI	AACGTT	1 cut(s)	935
AclWI	GGATC	1 cut(s)	977
AcoI	YGGCCR	3 cut(s)	114, 483, 1112
AcsI	RAATTY	2 cut(s)	790, 1148
AfaI	GTAC	4 cut(s)	50, 56, 554, 878
AfiI	CCNNNNNNNGG	1 cut(s)	112
AflIII	ACRYGT	1 cut(s)	996
AgsI	TTSAA	3 cut(s)	647, 893, 904
AjiI	CACGTC	1 cut(s)	252
AjnI	CCWGG	3 cut(s)	601, 812, 1082
AluBI	AGCT	7 cut(s)	91, 140, 154, 527, 532, 870, 1161
AluI	AGCT	7 cut(s)	91, 140, 154, 527, 532, 870, 1161
Alw21I	GWGCWC	1 cut(s)	126
Alw26I	GTCTC	1 cut(s)	701
AlwI	GGATC	1 cut(s)	977
Ama87I	CYCGRG	1 cut(s)	590
AoxI	GGCC	4 cut(s)	114, 483, 946, 1112
ApeKI	GCWGC	7 cut(s)	75, 137, 140, 151, 233, 524, 532
ApoI	RAATTY	2 cut(s)	790, 1148
Asp700I	GAANNNNTTC	1 cut(s)	833
AspA2I	CCTAGG	1 cut(s)	928
AspLEI	GCGC	1 cut(s)	276
AsuC2I	CCSGG	1 cut(s)	945
AsuHPI	GGTGA	3 cut(s)	351, 466, 651
AvaI	CYCGRG	1 cut(s)	590
AvrII	CCTAGG	1 cut(s)	928
AxyI	CCTNAGG	1 cut(s)	107
BalI	TGGCCA	1 cut(s)	116
BanI	GGYRCC	2 cut(s)	418, 924
BarI	GAAGNNNNNNTAC	2 cut(s)	305, 337
BbsI	GAAGAC	1 cut(s)	320
Bbv12I	GWGCWC	1 cut(s)	126
BbvI	GCAGC	7 cut(s)	87, 127, 149, 163, 220, 519, 536
BcgI	CGANNNNNNTGC	4 cut(s)	785, 819, 827, 861
BciT130I	CCWGG	3 cut(s)	603, 814, 1084
BcnI	CCSGG	1 cut(s)	945
BcoDI	GTCTC	1 cut(s)	701
BfaI	CTAG	4 cut(s)	101, 842, 929, 1088
BfmI	CTRYAG	1 cut(s)	149
BfuAI	ACCTGC	1 cut(s)	370
BisI	GCNGC	7 cut(s)	76, 138, 141, 152, 234, 525, 533
BlnI	CCTAGG	1 cut(s)	928
BlpI	GCTNAGC	1 cut(s)	528
BlsI	GCNGC	7 cut(s)	77, 139, 142, 153, 235, 526, 534
BmcAI	AGTACT	1 cut(s)	50
Bme1390I	CCNGG	4 cut(s)	603, 814, 945, 1084
BmeT110I	CYCGRG	1 cut(s)	590
BmgBI	CACGTC	1 cut(s)	252
BmiI	GGNNCC	2 cut(s)	420, 926
BmrFI	CCNGG	4 cut(s)	603, 814, 945, 1084
BmrI	ACTGGG	1 cut(s)	1016
BmsI	GCATC	2 cut(s)	318, 835
BmuI	ACTGGG	1 cut(s)	1016
BpiI	GAAGAC	1 cut(s)	320
BplI	GAGNNNNNCTC	2 cut(s)	113, 145
Bpu10I	CCTNAGC	1 cut(s)	914
Bpu1102I	GCTNAGC	1 cut(s)	528
BpuEI	CTTGAG	1 cut(s)	35
BpuMI	CCSGG	1 cut(s)	945
BsaAI	YACGTR	1 cut(s)	876
BsaJI	CCNNGG	5 cut(s)	813, 928, 943, 961, 1082
Bsc4I	CCNNNNNNNGG	1 cut(s)	112
Bse118I	RCCGGY	1 cut(s)	57
Bse1I	ACTGG	2 cut(s)	422, 1011
Bse21I	CCTNAGG	1 cut(s)	107
Bse3DI	GCAATG	2 cut(s)	269, 441
BseBI	CCWGG	3 cut(s)	603, 814, 1084
BseDI	CCNNGG	5 cut(s)	813, 928, 943, 961, 1082
BseGI	GGATG	2 cut(s)	772, 1056
BseLI	CCNNNNNNNGG	1 cut(s)	112
BseMI	GCAATG	2 cut(s)	269, 441
BseMII	CTCAG	4 cut(s)	98, 495, 905, 1155
BseNI	ACTGG	2 cut(s)	422, 1011
BseXI	GCAGC	7 cut(s)	87, 127, 149, 163, 220, 519, 536
BshFI	GGCC	4 cut(s)	116, 485, 948, 1114
BshNI	GGYRCC	2 cut(s)	418, 924
BsiHKAI	GWGCWC	1 cut(s)	126
BsiHKCI	CYCGRG	1 cut(s)	590
BsiSI	CCGG	2 cut(s)	58, 945
BslFI	GGGAC	4 cut(s)	158, 238, 531, 1017
BslI	CCNNNNNNNGG	1 cut(s)	112
BsmAI	GTCTC	1 cut(s)	701
BsmFI	GGGAC	4 cut(s)	158, 238, 531, 1017
BsmI	GAATGC	2 cut(s)	349, 956
BsnI	GGCC	4 cut(s)	116, 485, 948, 1114
BsoBI	CYCGRG	1 cut(s)	590
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp143I	GATC	2 cut(s)	652, 982
Bsp1720I	GCTNAGC	1 cut(s)	528
BspACI	CCGC	4 cut(s)	262, 474, 662, 745
BspANI	GGCC	4 cut(s)	116, 485, 948, 1114
BspCNI	CTCAG	4 cut(s)	99, 496, 906, 1154
BspLI	GGNNCC	2 cut(s)	420, 926
BspMAI	CTGCAG	1 cut(s)	153
BspMI	ACCTGC	1 cut(s)	370
BspPI	GGATC	1 cut(s)	977
BspT107I	GGYRCC	2 cut(s)	418, 924
BsrDI	GCAATG	2 cut(s)	269, 441
BsrFI	RCCGGY	1 cut(s)	57
BsrI	ACTGG	2 cut(s)	422, 1011
BssAI	RCCGGY	1 cut(s)	57
BssECI	CCNNGG	5 cut(s)	813, 928, 943, 961, 1082
BssMI	GATC	2 cut(s)	652, 982
BssT1I	CCWWGG	1 cut(s)	928
Bst2UI	CCWGG	3 cut(s)	603, 814, 1084
Bst4CI	ACNGT	1 cut(s)	965
BstBAI	YACGTR	1 cut(s)	876
BstC8I	GCNNGC	6 cut(s)	126, 145, 149, 231, 333, 537
BstDEI	CTNAG	6 cut(s)	107, 504, 528, 542, 914, 1141
BstDSI	CCRYGG	1 cut(s)	961
BstF5I	GGATG	2 cut(s)	772, 1056
BstHHI	GCGC	1 cut(s)	276
BstKTI	GATC	2 cut(s)	655, 985
BstMAI	GTCTC	1 cut(s)	701
BstMBI	GATC	2 cut(s)	652, 982
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstNI	CCWGG	3 cut(s)	603, 814, 1084
BstNSI	RCATGY	4 cut(s)	65, 714, 810, 1000
BstSCI	CCNGG	4 cut(s)	601, 812, 943, 1082
BstSFI	CTRYAG	1 cut(s)	149
BstSNI	TACGTA	1 cut(s)	876
BstV1I	GCAGC	7 cut(s)	87, 127, 149, 163, 220, 519, 536
BstV2I	GAAGAC	1 cut(s)	320
Bsu36I	CCTNAGG	1 cut(s)	107
BsuRI	GGCC	4 cut(s)	116, 485, 948, 1114
BtgI	CCRYGG	1 cut(s)	961
BtrI	CACGTC	1 cut(s)	252
BtsCI	GGATG	2 cut(s)	772, 1056
BtsI	GCAGTG	1 cut(s)	94
BtsIMutI	CAGTG	2 cut(s)	94, 560
BveI	ACCTGC	1 cut(s)	370
Cac8I	GCNNGC	6 cut(s)	126, 145, 149, 231, 333, 537
CfoI	GCGC	1 cut(s)	276
Cfr10I	RCCGGY	1 cut(s)	57
CseI	GACGC	1 cut(s)	57
Csp6I	GTAC	4 cut(s)	49, 55, 553, 877
CspCI	CAANNNNNGTGG	2 cut(s)	238, 273
CviAII	CATG	7 cut(s)	62, 711, 807, 826, 968, 997, 1171
CviQI	GTAC	4 cut(s)	49, 55, 553, 877
DdeI	CTNAG	6 cut(s)	107, 504, 528, 542, 914, 1141
DpnI	GATC	2 cut(s)	654, 984
DpnII	GATC	2 cut(s)	652, 982
EaeI	YGGCCR	3 cut(s)	114, 483, 1112
Eco105I	TACGTA	1 cut(s)	876
Eco130I	CCWWGG	1 cut(s)	928
Eco32I	GATATC	3 cut(s)	673, 783, 1013
Eco81I	CCTNAGG	1 cut(s)	107
Eco88I	CYCGRG	1 cut(s)	590
EcoRII	CCWGG	3 cut(s)	601, 812, 1082
EcoRV	GATATC	3 cut(s)	673, 783, 1013
EcoT14I	CCWWGG	1 cut(s)	928
EcoT22I	ATGCAT	1 cut(s)	808
ErhI	CCWWGG	1 cut(s)	928
FaeI	CATG	7 cut(s)	65, 714, 810, 829, 971, 1000, 1174
FaqI	GGGAC	4 cut(s)	158, 238, 531, 1017
FatI	CATG	7 cut(s)	61, 710, 806, 825, 967, 996, 1170
FauI	CCCGC	1 cut(s)	467
FblI	GTMKAC	1 cut(s)	186
Fnu4HI	GCNGC	7 cut(s)	76, 138, 141, 152, 234, 525, 533
FokI	GGATG	2 cut(s)	759, 1043
Fsp4HI	GCNGC	7 cut(s)	76, 138, 141, 152, 234, 525, 533
FspBI	CTAG	4 cut(s)	101, 842, 929, 1088
GlaI	GCGC	1 cut(s)	275
GluI	GCNGC	7 cut(s)	76, 138, 141, 152, 234, 525, 533
HaeIII	GGCC	4 cut(s)	116, 485, 948, 1114
HapII	CCGG	2 cut(s)	58, 945
HgaI	GACGC	1 cut(s)	57
HhaI	GCGC	1 cut(s)	276
Hin1II	CATG	7 cut(s)	65, 714, 810, 829, 971, 1000, 1174
Hin6I	GCGC	1 cut(s)	274
HinP1I	GCGC	1 cut(s)	274
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HindIII	AAGCTT	1 cut(s)	868
HinfI	GANTC	1 cut(s)	568
HpaII	CCGG	2 cut(s)	58, 945
HphI	GGTGA	3 cut(s)	351, 466, 651
Hpy166II	GTNNAC	2 cut(s)	187, 405
Hpy188I	TCNGA	5 cut(s)	220, 578, 762, 910, 1144
Hpy188III	TCNNGA	4 cut(s)	14, 608, 1016, 1156
Hpy8I	GTNNAC	2 cut(s)	187, 405
Hpy99I	CGWCG	2 cut(s)	188, 635
HpyAV	CCTTC	2 cut(s)	168, 409
HpyCH4III	ACNGT	1 cut(s)	965
HpyCH4IV	ACGT	4 cut(s)	251, 875, 935, 1178
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
HpyF3I	CTNAG	6 cut(s)	107, 504, 528, 542, 914, 1141
HpySE526I	ACGT	4 cut(s)	251, 875, 935, 1178
Hsp92II	CATG	7 cut(s)	65, 714, 810, 829, 971, 1000, 1174
HspAI	GCGC	1 cut(s)	274
Kzo9I	GATC	2 cut(s)	652, 982
LmnI	GCTCC	2 cut(s)	159, 698
Lsp1109I	GCAGC	7 cut(s)	87, 127, 149, 163, 220, 519, 536
LweI	GCATC	2 cut(s)	318, 835
MaeI	CTAG	4 cut(s)	101, 842, 929, 1088
MaeII	ACGT	4 cut(s)	251, 875, 935, 1178
MaeIII	GTNAC	2 cut(s)	4, 357
MalI	GATC	2 cut(s)	654, 984
MboI	GATC	2 cut(s)	652, 982
MboII	GAAGA	4 cut(s)	325, 505, 734, 826
MhlI	GDGCHC	1 cut(s)	126
MlsI	TGGCCA	1 cut(s)	116
MluCI	AATT	4 cut(s)	369, 790, 1092, 1148
MluNI	TGGCCA	1 cut(s)	116
MmeI	TCCRAC	1 cut(s)	243
MnlI	CCTC	9 cut(s)	102, 139, 191, 247, 288, 302, 367, 450, 464
Mox20I	TGGCCA	1 cut(s)	116
Mph1103I	ATGCAT	1 cut(s)	808
MroXI	GAANNNNTTC	1 cut(s)	833
MscI	TGGCCA	1 cut(s)	116
MslI	CAYNNNNRTG	2 cut(s)	664, 966
Msp20I	TGGCCA	1 cut(s)	116
MspA1I	CMGCKG	1 cut(s)	140
MspI	CCGG	2 cut(s)	58, 945
MspR9I	CCNGG	4 cut(s)	603, 814, 945, 1084
Mva1269I	GAATGC	2 cut(s)	349, 956
MvaI	CCWGG	3 cut(s)	603, 814, 1084
MwoI	GCNNNNNNNGC	1 cut(s)	134
NciI	CCSGG	1 cut(s)	945
NdeII	GATC	2 cut(s)	652, 982
NlaIII	CATG	7 cut(s)	65, 714, 810, 829, 971, 1000, 1174
NlaIV	GGNNCC	2 cut(s)	420, 926
NmuCI	GTSAC	2 cut(s)	4, 357
NsiI	ATGCAT	1 cut(s)	808
NspI	RCATGY	4 cut(s)	65, 714, 810, 1000
PaqCI	CACCTGC	1 cut(s)	370
PciI	ACATGT	1 cut(s)	996
PctI	GAATGC	2 cut(s)	349, 956
PdmI	GAANNNNTTC	1 cut(s)	833
PfeI	GAWTC	1 cut(s)	568
PkrI	GCNGC	7 cut(s)	77, 139, 142, 153, 235, 526, 534
Ppu21I	YACGTR	1 cut(s)	876
PscI	ACATGT	1 cut(s)	996
Psp1406I	AACGTT	1 cut(s)	935
Psp6I	CCWGG	3 cut(s)	601, 812, 1082
PspGI	CCWGG	3 cut(s)	601, 812, 1082
PspN4I	GGNNCC	2 cut(s)	420, 926
PstI	CTGCAG	1 cut(s)	153
PvuII	CAGCTG	1 cut(s)	140
RsaI	GTAC	4 cut(s)	50, 56, 554, 878
RsaNI	GTAC	4 cut(s)	49, 55, 553, 877
RseI	CAYNNNNRTG	2 cut(s)	664, 966
SalI	GTCGAC	1 cut(s)	185
SatI	GCNGC	7 cut(s)	76, 138, 141, 152, 234, 525, 533
Sau3AI	GATC	2 cut(s)	652, 982
ScaI	AGTACT	1 cut(s)	50
ScrFI	CCNGG	4 cut(s)	603, 814, 945, 1084
SduI	GDGCHC	1 cut(s)	126
SfaNI	GCATC	2 cut(s)	318, 835
SfcI	CTRYAG	1 cut(s)	149
SmiMI	CAYNNNNRTG	2 cut(s)	664, 966
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
SnaBI	TACGTA	1 cut(s)	876
Sse9I	AATT	4 cut(s)	369, 790, 1092, 1148
SsiI	CCGC	4 cut(s)	262, 474, 662, 745
SspMI	CTAG	4 cut(s)	101, 842, 929, 1088
StyD4I	CCNGG	4 cut(s)	601, 812, 943, 1082
StyI	CCWWGG	1 cut(s)	928
TaaI	ACNGT	1 cut(s)	965
TaiI	ACGT	4 cut(s)	254, 878, 938, 1181
TaqI	TCGA	6 cut(s)	186, 396, 675, 795, 837, 1134
TasI	AATT	4 cut(s)	369, 790, 1092, 1148
TatI	WGTACW	2 cut(s)	48, 552
TfiI	GAWTC	1 cut(s)	568
TscAI	CASTG	2 cut(s)	101, 567
TseFI	GTSAC	2 cut(s)	4, 357
TseI	GCWGC	7 cut(s)	75, 137, 140, 151, 233, 524, 532
Tsp45I	GTSAC	2 cut(s)	4, 357
TspDTI	ATGAA	4 cut(s)	581, 695, 842, 1141
TspGWI	ACGGA	4 cut(s)	229, 699, 732, 975
TspRI	CASTG	2 cut(s)	101, 567
XapI	RAATTY	2 cut(s)	790, 1148
XceI	RCATGY	4 cut(s)	65, 714, 810, 1000
XmaJI	CCTAGG	1 cut(s)	928
XmiI	GTMKAC	1 cut(s)	186
XmnI	GAANNNNTTC	1 cut(s)	833
XspI	CTAG	4 cut(s)	101, 842, 929, 1088
ZrmI	AGTACT	1 cut(s)	50
Zsp2I	ATGCAT	1 cut(s)	808

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.