pycom11g20630

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0006464
Physical Location & Seq
Reverse (-)
23726163 .. 23730375
4213 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 954 bp
ATGAATCACACGCAGCAGCCTTCCCAGCCCCAAGATCTGTCAGATCCCCAACTCCCCCATATCAGAGTCCACCACCCCAACTCTCCCCGACACCACCCCAACTCCCCTCGTCACCACTCCTCCTCCGCCGCCACTCCCACCCCCACCGCCGGCGCGCGCCGCAAGCTCGGCGTCGCCGTTGACCTCTCTGACGAGAGCGCCCACGCCGTCCGCTGGGCTGTCGACCACTACATCCGCCCCGGCGACGCCGTCATCCTCCTCCACGTCAGCCCCACCTCCGTCCTCTTCGGCGCCGACTGGGGCTCCGTTGACCTCTCCATCAATACCAACGACGACATTGATTTCGTCGACAACCACGCCCTGCACGACTCCGTCAGGCAGAAGAAGCTTGAGAACGACTTCGATGCCTTCACCGCCTCCAAGGCCGCCGATCTTGCCAAGCCCTTGAGGGAGGCGCAGATTCCGTACAAGATCCACATCGTCAAGGACCATGACATGAAGGAGCGGCTCTGCTTGGAGGTCGAGAGGCTAGGGCTCAGTGCCGTGATCATGGGGAGCCGAGGGGTCGGCGCTGCCAAGCGTGGGAACGACGGCAGGCTGGGAAGCGTCAGCGATTATTGTGTACACCACTGTGTTTGTCCCGTTGTTGTTGTCCGGTTTCCGGAGGATGACAATTGCGGCGTTGCTGATGGTGGTTCTGGTGCTCCTTCTGTTGCTGCGGCGGTTGTTTCTATTAAAGAGAATAAGGAGGAAGAGGCCGTGATCAAGCCGGTGCTAAAGGAGGAGCATAAGTCAGTTTCGAAGCTTAGCAGTTTGTGTAGATGTTTGAGTCGACTGGGTGTGGTGTCAAGATACGTTGAGTCCAGACTGCTTGCTCTCCTCACCAACAGCTCTTTCTCATGTATAAACTTTGGGATGATTGGAGATGGTATTTGTACGGTGAATGAGGTTTAG

Protein Analysis

318

Amino Acids

34.37

Weight (kDa)

6.4

Isoelectric Point (pI)

39.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 54 - 219 2.6e-22 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 290
AccBSI CCGCTC 1 cut(s) 505
AccI GTMKAC 3 cut(s) 222, 348, 832
AccII CGCG 2 cut(s) 155, 157
AccIII TCCGGA 1 cut(s) 661
AclWI GGATC 2 cut(s) 38, 466
AcyI GRCGYC 3 cut(s) 171, 246, 291
AfaI GTAC 3 cut(s) 467, 624, 937
AfiI CCNNNNNNNGG 4 cut(s) 149, 213, 582, 661
AjiI CACGTC 1 cut(s) 265
AjuI GAANNNNNNNTTGG 2 cut(s) 878, 910
AleI CACNNNNGTG 1 cut(s) 630
AluBI AGCT 4 cut(s) 166, 388, 805, 891
AluI AGCT 4 cut(s) 166, 388, 805, 891
Alw21I GWGCWC 1 cut(s) 706
AlwI GGATC 2 cut(s) 38, 466
Aor13HI TCCGGA 1 cut(s) 661
AoxI GGCC 2 cut(s) 423, 756
ApeKI GCWGC 4 cut(s) 13, 16, 572, 716
ArsI GACNNNNNNTTYG 2 cut(s) 326, 358
Asp700I GAANNNNTTC 1 cut(s) 398
AspLEI GCGC 7 cut(s) 155, 157, 159, 200, 293, 457, 572
AspS9I GGNCC 1 cut(s) 487
AsuC2I CCSGG 1 cut(s) 240
AsuHPI GGTGA 4 cut(s) 104, 403, 874, 952
AsuII TTCGAA 1 cut(s) 800
AvaII GGWCC 1 cut(s) 487
BanI GGYRCC 1 cut(s) 290
BanII GRGCYC 2 cut(s) 305, 537
Bbv12I GWGCWC 1 cut(s) 706
BbvI GCAGC 4 cut(s) 25, 28, 559, 703
BccI CCATC 3 cut(s) 326, 683, 920
BceAI ACGGC 6 cut(s) 161, 191, 233, 527, 607, 743
BcgI CGANNNNNNTGC 2 cut(s) 386, 420
BclI TGATCA 2 cut(s) 546, 762
BcnI CCSGG 1 cut(s) 240
BfaI CTAG 1 cut(s) 530
BfoI RGCGCY 3 cut(s) 201, 294, 573
BglI GCCNNNNNGGC 1 cut(s) 422
BglII AGATCT 1 cut(s) 34
BlpI GCTNAGC 1 cut(s) 806
Bme1390I CCNGG 1 cut(s) 240
Bme18I GGWCC 1 cut(s) 487
BmgBI CACGTC 1 cut(s) 265
BmgT120I GGNCC 1 cut(s) 487
BmiI GGNNCC 3 cut(s) 292, 304, 557
BmrFI CCNGG 1 cut(s) 240
BmrI ACTGGG 2 cut(s) 307, 845
BmsI GCATC 1 cut(s) 394
BmuI ACTGGG 2 cut(s) 307, 845
Bpu1102I GCTNAGC 1 cut(s) 806
Bpu14I TTCGAA 1 cut(s) 800
BpuEI CTTGAG 2 cut(s) 410, 466
BpuMI CCSGG 1 cut(s) 240
BsaBI GATNNNNATC 1 cut(s) 476
BsaHI GRCGYC 3 cut(s) 171, 246, 291
BsaJI CCNNGG 3 cut(s) 238, 420, 559
BsaWI WCCGGW 2 cut(s) 654, 661
Bsc4I CCNNNNNNNGG 4 cut(s) 149, 213, 582, 661
Bse118I RCCGGY 2 cut(s) 149, 769
Bse1I ACTGG 2 cut(s) 302, 840
Bse8I GATNNNNATC 1 cut(s) 476
BseAI TCCGGA 1 cut(s) 661
BseDI CCNNGG 3 cut(s) 238, 420, 559
BseGI GGATG 4 cut(s) 231, 252, 673, 921
BseJI GATNNNNATC 1 cut(s) 476
BseLI CCNNNNNNNGG 4 cut(s) 149, 213, 582, 661
BseMII CTCAG 1 cut(s) 550
BseNI ACTGG 2 cut(s) 302, 840
BsePI GCGCGC 2 cut(s) 153, 155
BseRI GAGGAG 5 cut(s) 109, 112, 248, 797, 869
BseXI GCAGC 4 cut(s) 25, 28, 559, 703
BseYI CCCAGC 3 cut(s) 24, 213, 598
BsgI GTGCAG 1 cut(s) 347
Bsh1236I CGCG 2 cut(s) 155, 157
BshFI GGCC 2 cut(s) 425, 758
BshNI GGYRCC 1 cut(s) 290
BsiHKAI GWGCWC 1 cut(s) 706
BsiSI CCGG 5 cut(s) 150, 240, 655, 662, 770
BslFI GGGAC 1 cut(s) 624
BslI CCNNNNNNNGG 4 cut(s) 149, 213, 582, 661
BsmFI GGGAC 1 cut(s) 624
BsnI GGCC 2 cut(s) 425, 758
Bsp119I TTCGAA 1 cut(s) 800
Bsp1286I GDGCHC 3 cut(s) 305, 537, 706
Bsp13I TCCGGA 1 cut(s) 661
Bsp1407I TGTACA 1 cut(s) 622
Bsp143I GATC 6 cut(s) 34, 43, 430, 471, 546, 762
Bsp1720I GCTNAGC 1 cut(s) 806
BspANI GGCC 2 cut(s) 425, 758
BspCNI CTCAG 1 cut(s) 549
BspEI TCCGGA 1 cut(s) 661
BspFNI CGCG 2 cut(s) 155, 157
BspLI GGNNCC 3 cut(s) 292, 304, 557
BspPI GGATC 2 cut(s) 38, 466
BspT104I TTCGAA 1 cut(s) 800
BspT107I GGYRCC 1 cut(s) 290
BsrBI CCGCTC 1 cut(s) 505
BsrFI RCCGGY 2 cut(s) 149, 769
BsrGI TGTACA 1 cut(s) 622
BsrI ACTGG 2 cut(s) 302, 840
BssAI RCCGGY 2 cut(s) 149, 769
BssECI CCNNGG 3 cut(s) 238, 420, 559
BssHII GCGCGC 2 cut(s) 153, 155
BssMI GATC 6 cut(s) 34, 43, 430, 471, 546, 762
BssNI GRCGYC 3 cut(s) 171, 246, 291
BssT1I CCWWGG 1 cut(s) 420
Bst4CI ACNGT 2 cut(s) 632, 940
Bst6I CTCTTC 2 cut(s) 290, 747
BstACI GRCGYC 3 cut(s) 171, 246, 291
BstAUI TGTACA 1 cut(s) 622
BstBI TTCGAA 1 cut(s) 800
BstC8I GCNNGC 6 cut(s) 151, 155, 157, 164, 596, 873
BstDEI CTNAG 2 cut(s) 536, 806
BstF5I GGATG 4 cut(s) 231, 252, 673, 921
BstFNI CGCG 2 cut(s) 155, 157
BstH2I RGCGCY 3 cut(s) 201, 294, 573
BstHHI GCGC 7 cut(s) 155, 157, 159, 200, 293, 457, 572
BstKTI GATC 6 cut(s) 37, 46, 433, 474, 549, 765
BstMBI GATC 6 cut(s) 34, 43, 430, 471, 546, 762
BstMWI GCNNNNNNNGC 8 cut(s) 25, 159, 163, 168, 385, 413, 422, 434
BstSCI CCNGG 1 cut(s) 238
BstUI CGCG 2 cut(s) 155, 157
BstV1I GCAGC 4 cut(s) 25, 28, 559, 703
BstX2I RGATCY 3 cut(s) 34, 43, 471
BstYI RGATCY 3 cut(s) 34, 43, 471
BsuRI GGCC 2 cut(s) 425, 758
BtrI CACGTC 1 cut(s) 265
BtsCI GGATG 4 cut(s) 231, 252, 673, 921
BtsIMutI CAGTG 2 cut(s) 544, 628
Cac8I GCNNGC 6 cut(s) 151, 155, 157, 164, 596, 873
CfoI GCGC 7 cut(s) 155, 157, 159, 200, 293, 457, 572
Cfr10I RCCGGY 2 cut(s) 149, 769
Cfr13I GGNCC 1 cut(s) 487
CseI GACGC 3 cut(s) 160, 254, 595
Csp6I GTAC 3 cut(s) 466, 623, 936
CspCI CAANNNNNGTGG 2 cut(s) 617, 652
CviAII CATG 4 cut(s) 491, 496, 550, 900
CviQI GTAC 3 cut(s) 466, 623, 936
DdeI CTNAG 2 cut(s) 536, 806
DinI GGCGCC 1 cut(s) 292
DpnI GATC 6 cut(s) 36, 45, 432, 473, 548, 764
DpnII GATC 6 cut(s) 34, 43, 430, 471, 546, 762
Eam1104I CTCTTC 2 cut(s) 290, 747
EarI CTCTTC 2 cut(s) 290, 747
EciI GGCGGA 2 cut(s) 115, 224
Eco130I CCWWGG 1 cut(s) 420
Eco24I GRGCYC 2 cut(s) 305, 537
Eco47I GGWCC 1 cut(s) 487
EcoT14I CCWWGG 1 cut(s) 420
EcoT38I GRGCYC 2 cut(s) 305, 537
EgeI GGCGCC 1 cut(s) 292
EheI GGCGCC 1 cut(s) 292
ErhI CCWWGG 1 cut(s) 420
FaeI CATG 4 cut(s) 494, 499, 553, 903
FaiI YATR 7 cut(s) 60, 492, 497, 551, 789, 901, 905
FaqI GGGAC 1 cut(s) 624
FatI CATG 4 cut(s) 490, 495, 549, 899
FbaI TGATCA 2 cut(s) 546, 762
FblI GTMKAC 3 cut(s) 222, 348, 832
FokI GGATG 4 cut(s) 218, 239, 680, 928
FriOI GRGCYC 2 cut(s) 305, 537
FspBI CTAG 1 cut(s) 530
GlaI GCGC 7 cut(s) 154, 156, 158, 199, 292, 456, 571
GsaI CCCAGC 3 cut(s) 28, 217, 602
HaeII RGCGCY 3 cut(s) 201, 294, 573
HaeIII GGCC 2 cut(s) 425, 758
HapII CCGG 5 cut(s) 150, 240, 655, 662, 770
HgaI GACGC 3 cut(s) 160, 254, 595
HhaI GCGC 7 cut(s) 155, 157, 159, 200, 293, 457, 572
Hin1I GRCGYC 3 cut(s) 171, 246, 291
Hin1II CATG 4 cut(s) 494, 499, 553, 903
Hin6I GCGC 7 cut(s) 153, 155, 157, 198, 291, 455, 570
HinP1I GCGC 7 cut(s) 153, 155, 157, 198, 291, 455, 570
HincII GTYRAC 5 cut(s) 181, 223, 310, 349, 833
HindII GTYRAC 5 cut(s) 181, 223, 310, 349, 833
HindIII AAGCTT 2 cut(s) 386, 803
HinfI GANTC 6 cut(s) 4, 66, 368, 460, 829, 860
HpaII CCGG 5 cut(s) 150, 240, 655, 662, 770
HphI GGTGA 4 cut(s) 104, 403, 874, 952
Hpy166II GTNNAC 8 cut(s) 70, 181, 223, 310, 349, 623, 625, 833
Hpy188I TCNGA 3 cut(s) 43, 65, 190
Hpy188III TCNNGA 4 cut(s) 523, 662, 849, 864
Hpy8I GTNNAC 8 cut(s) 70, 181, 223, 310, 349, 623, 625, 833
Hpy99I CGWCG 5 cut(s) 176, 248, 335, 350, 593
HpyAV CCTTC 4 cut(s) 30, 418, 493, 717
HpyCH4III ACNGT 2 cut(s) 632, 940
HpyCH4IV ACGT 2 cut(s) 264, 855
HpyCH4V TGCA 1 cut(s) 364
HpyF10VI GCNNNNNNNGC 8 cut(s) 25, 159, 163, 168, 385, 413, 422, 434
HpyF3I CTNAG 2 cut(s) 536, 806
HpySE526I ACGT 2 cut(s) 264, 855
Hsp92I GRCGYC 3 cut(s) 171, 246, 291
Hsp92II CATG 4 cut(s) 494, 499, 553, 903
HspAI GCGC 7 cut(s) 153, 155, 157, 198, 291, 455, 570
KasI GGCGCC 1 cut(s) 290
Kpn2I TCCGGA 1 cut(s) 661
KroI GCCGGC 1 cut(s) 149
KroNI GCCGGC 1 cut(s) 151
Ksp22I TGATCA 2 cut(s) 546, 762
Kzo9I GATC 6 cut(s) 34, 43, 430, 471, 546, 762
LmnI GCTCC 5 cut(s) 308, 502, 555, 709, 784
Lsp1109I GCAGC 4 cut(s) 25, 28, 559, 703
LweI GCATC 1 cut(s) 394
MaeI CTAG 1 cut(s) 530
MaeII ACGT 2 cut(s) 264, 855
MaeIII GTNAC 1 cut(s) 110
MalI GATC 6 cut(s) 36, 45, 432, 473, 548, 764
MbiI CCGCTC 1 cut(s) 505
MboI GATC 6 cut(s) 34, 43, 430, 471, 546, 762
MboII GAAGA 3 cut(s) 277, 394, 764
MfeI CAATTG 1 cut(s) 673
MflI RGATCY 3 cut(s) 34, 43, 471
MhlI GDGCHC 3 cut(s) 305, 537, 706
MluCI AATT 1 cut(s) 673
Mly113I GGCGCC 1 cut(s) 291
MlyI GAGTC 4 cut(s) 75, 362, 838, 869
MreI CGCCGGCG 1 cut(s) 149
MroI TCCGGA 1 cut(s) 661
MroNI GCCGGC 1 cut(s) 149
MroXI GAANNNNTTC 1 cut(s) 398
MseI TTAA 1 cut(s) 735
MslI CAYNNNNRTG 1 cut(s) 630
MspA1I CMGCKG 1 cut(s) 213
MspI CCGG 5 cut(s) 150, 240, 655, 662, 770
MspR9I CCNGG 1 cut(s) 240
MunI CAATTG 1 cut(s) 673
MvnI CGCG 2 cut(s) 155, 157
MwoI GCNNNNNNNGC 8 cut(s) 25, 159, 163, 168, 385, 413, 422, 434
NaeI GCCGGC 1 cut(s) 151
NarI GGCGCC 1 cut(s) 291
NciI CCSGG 1 cut(s) 240
NdeII GATC 6 cut(s) 34, 43, 430, 471, 546, 762
NgoMIV GCCGGC 1 cut(s) 149
NlaIII CATG 4 cut(s) 494, 499, 553, 903
NlaIV GGNNCC 3 cut(s) 292, 304, 557
NmeAIII GCCGAG 2 cut(s) 147, 584
NmuCI GTSAC 1 cut(s) 110
NspV TTCGAA 1 cut(s) 800
OliI CACNNNNGTG 1 cut(s) 630
PauI GCGCGC 2 cut(s) 153, 155
PcsI WCGNNNNNNNCGW 2 cut(s) 174, 363
PdiI GCCGGC 1 cut(s) 151
PdmI GAANNNNTTC 1 cut(s) 398
PfeI GAWTC 2 cut(s) 4, 460
PflFI GACNNNGTC 2 cut(s) 248, 371
PleI GAGTC 4 cut(s) 74, 362, 837, 868
PluTI GGCGCC 1 cut(s) 294
PpsI GAGTC 4 cut(s) 74, 362, 837, 868
PspFI CCCAGC 3 cut(s) 24, 213, 598
PspN4I GGNNCC 3 cut(s) 292, 304, 557
PspPI GGNCC 1 cut(s) 487
PsuI RGATCY 3 cut(s) 34, 43, 471
PsyI GACNNNGTC 2 cut(s) 248, 371
PteI GCGCGC 2 cut(s) 153, 155
RsaI GTAC 3 cut(s) 467, 624, 937
RsaNI GTAC 3 cut(s) 466, 623, 936
RseI CAYNNNNRTG 1 cut(s) 630
SalI GTCGAC 3 cut(s) 221, 347, 831
SaqAI TTAA 1 cut(s) 735
Sau3AI GATC 6 cut(s) 34, 43, 430, 471, 546, 762
Sau96I GGNCC 1 cut(s) 487
SchI GAGTC 4 cut(s) 75, 362, 838, 869
ScrFI CCNGG 1 cut(s) 240
SduI GDGCHC 3 cut(s) 305, 537, 706
SfaNI GCATC 1 cut(s) 394
SfoI GGCGCC 1 cut(s) 292
SfuI TTCGAA 1 cut(s) 800
SgrAI CRCCGGYG 1 cut(s) 149
SinI GGWCC 1 cut(s) 487
SmiMI CAYNNNNRTG 1 cut(s) 630
SmlI CTYRAG 2 cut(s) 389, 445
SmoI CTYRAG 2 cut(s) 389, 445
Sse9I AATT 1 cut(s) 673
SspDI GGCGCC 1 cut(s) 290
SspMI CTAG 1 cut(s) 530
StyD4I CCNGG 1 cut(s) 238
StyI CCWWGG 1 cut(s) 420
TaaI ACNGT 2 cut(s) 632, 940
TaiI ACGT 2 cut(s) 267, 858
TaqI TCGA 6 cut(s) 222, 348, 402, 522, 800, 832
TasI AATT 1 cut(s) 673
TatI WGTACW 1 cut(s) 622
TauI GCSGC 6 cut(s) 131, 162, 428, 508, 681, 722
TfiI GAWTC 2 cut(s) 4, 460
Tru1I TTAA 1 cut(s) 735
Tru9I TTAA 1 cut(s) 735
TscAI CASTG 2 cut(s) 544, 635
TseFI GTSAC 1 cut(s) 110
TseI GCWGC 4 cut(s) 13, 16, 572, 716
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 2 cut(s) 17, 512
TspGWI ACGGA 4 cut(s) 268, 295, 361, 453
TspRI CASTG 2 cut(s) 544, 635
Tth111I GACNNNGTC 2 cut(s) 248, 371
VpaK11BI GGWCC 1 cut(s) 487
XmiI GTMKAC 3 cut(s) 222, 348, 832
XmnI GAANNNNTTC 1 cut(s) 398
XspI CTAG 1 cut(s) 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.