Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0006922

Physical Location & Seq

Genomic Coordinates Reverse (-)

23879024 .. 23881555

Gene Structure 2532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

ATGAAAGAAGAAGCCCATTCGCCTGAGGCTTTTGCAGGTTCTTTTCTGCGACGCAAAGAAGTTGAAGGAGACAAGAATATGGCTCTCAATAACAGCAACGATCACTGGGCATTTCTGGAAGAAATGGATGCGCCTCTGTGGGTGGATCTCACTCTAGAAGCCAACTCAACAAACCAACATATTGATGATGACTGGTTTTACAGAAGCCATCTGTTCCACCAATGCTCTTCACGCCAGTTGAGGGCTGCATTTTTGAATTTGGGTGAGGATAGTATGGGCTTAAACTTTGACTTAGTAGGACCATCTTCGCCACAACTTCCGTCTTCTGTCTCTAAGTCAAGAGGCAAAGACTTTGTAAGCAAGAAATGGAGAGGGGAAAACCAAGATTTTACAGATAAGCGGGACCCAGACAAAGTGCTGAGTGGGACATCTTCCTGTGGGAACTCAGGGTCCAGTGATAAGATGAAACCCAAATTAAGCTTTATACAGTTGAAAGGAACATCCAGTTCCAAATCAAGTTCAGTTTGTAAAAGCAGTCTAACTGGAAATCACATACCCAATTGCTCTATGCCAACGTCCTCTGGTGGGGATCCAACATGTAGTTTTAGTTATGTGACAAACAAGGAAAATGAAAGCAGTGCAGCAAGCACCATTACATCTGAGAGTGGTCAGCAGCAACAACAGAAGTTTATGGAGAAATCAAATCCGGCATTGAGTCAAACAAATGGGATATTTTCCGTAATAAAGGCTGGTTTCAGGAAAAGCGGTATTACGAGGCCAGCAGCCAGAGTGGAGATTAATTGTGATAGAAGGGAATCAAGAGGCCGTAAATCTTCATTCAGCAAGTCTAGTGTGGGATCATCTTCAAATCCTGGTTCGAATGGCAGGACCTCAACATCTACATCAATACAGTACAAAGAAAGATCCCCAGATAGCAGGAATGTGGCAAGAATGAGTTATGCAACCAAGAACAGAATAAAACCTTCTAAAGTATCCAAGTTGTCTATGCATAAGAGTGAAAGAGGGACTGCAAAGTACATAATTGGACCTAATGTTTCAAAGTCAATCCACGTGGAAGCTACAAAACCAAAGGTTCAGTATCAGATTCTGAGAAGGAAACCTTTGGATTCTGTTCTAGTTAAAGAAACTAAACCGGTAACTACTGTGAAATCTAAGAAGAAACCAGTTGTTGGTGGATCTAACAGATTGGCGGCCCCAGGAAAAGAGAATTTGAAAGGGAGAATCGCTGGGAGTCAGAAATGCAATAACAAAGGCATTGCTCCTGTAACCATGGTTTGGAGTCCGAAGGGGACAAAACAGAGCATTTTGCAAAGGACTGACCGAATGGGACTGGCTGGAAAGTGTTTGCTCCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

459

Amino Acids

50.1

Weight (kDa)

9.92

Isoelectric Point (pI)

46.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006922)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030
malus_domestica	MD03G1218200.v1.1 MD11G1236000.v1.1
pyrus_communis	pycom03g16770 pycom11g20770
rosa_chinensis	RchiOBHm_Chr5g0036061
rosa_laevigata	RLG00000033662
rosa_multiflora	Rmu_sc0000382.1_g000033 Rmu_sc0012355.1_g000005
rosa_roxburghii	Rroxscaffold_1G00044690
rosa_rugosa	Rorug05G0152400 Rorug05G0152500 Rorug05G0152500
rosa_samantha	Rh5AG246600 Rh5BG246900 Rh5CG278000 Rh5DG255500
rosa_wichuraiana	Rw5G022630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	26
AccB7I	CCANNNNNTGG	2 cut(s)	1190, 1296
AciI	CCGC	3 cut(s)	400, 765, 1211
AclWI	GGATC	6 cut(s)	153, 584, 597, 865, 918, 1204
AcsI	RAATTY	2 cut(s)	256, 1228
AcvI	CACGTG	1 cut(s)	1072
AfaI	GTAC	2 cut(s)	914, 1037
AfiI	CCNNNNNNNGG	4 cut(s)	241, 585, 1190, 1296
AflIII	ACRYGT	1 cut(s)	596
AgeI	ACCGGT	1 cut(s)	1153
AgsI	TTSAA	6 cut(s)	65, 256, 493, 867, 1059, 1234
AjnI	CCWGG	2 cut(s)	871, 1216
AloI	GAACNNNNNNTCC	2 cut(s)	434, 466
AluBI	AGCT	2 cut(s)	480, 1079
AluI	AGCT	2 cut(s)	480, 1079
Alw26I	GTCTC	2 cut(s)	63, 334
AlwI	GGATC	6 cut(s)	153, 584, 597, 865, 918, 1204
AlwNI	CAGNNNCTG	1 cut(s)	1108
AoxI	GGCC	3 cut(s)	776, 823, 1212
ApeKI	GCWGC	4 cut(s)	245, 641, 673, 782
ApoI	RAATTY	2 cut(s)	256, 1228
AseI	ATTAAT	1 cut(s)	798
AsiGI	ACCGGT	1 cut(s)	1153
AspLEI	GCGC	1 cut(s)	133
AspS9I	GGNCC	6 cut(s)	299, 403, 450, 888, 1046, 1213
AsuHPI	GGTGA	1 cut(s)	275
AsuII	TTCGAA	1 cut(s)	878
AvaII	GGWCC	5 cut(s)	299, 403, 450, 888, 1046
AxyI	CCTNAGG	1 cut(s)	24
BamHI	GGATCC	1 cut(s)	589
BbrPI	CACGTG	1 cut(s)	1072
BbsI	GAAGAC	1 cut(s)	315
BbvI	GCAGC	4 cut(s)	232, 653, 685, 794
BccI	CCATC	2 cut(s)	216, 310
BceAI	ACGGC	1 cut(s)	810
BciT130I	CCWGG	2 cut(s)	873, 1218
BciVI	GTATCC	1 cut(s)	1003
BcoDI	GTCTC	2 cut(s)	63, 334
BfaI	CTAG	3 cut(s)	155, 849, 1136
BfuAI	ACCTGC	1 cut(s)	26
BfuI	GTATCC	1 cut(s)	1003
BisI	GCNGC	5 cut(s)	246, 642, 674, 783, 1212
BlsI	GCNGC	5 cut(s)	247, 643, 675, 784, 1213
Bme1390I	CCNGG	2 cut(s)	873, 1218
Bme18I	GGWCC	5 cut(s)	299, 403, 450, 888, 1046
BmgT120I	GGNCC	6 cut(s)	299, 403, 450, 888, 1046, 1213
BmiI	GGNNCC	5 cut(s)	404, 405, 451, 591, 1215
BmrFI	CCNGG	2 cut(s)	873, 1218
BmrI	ACTGGG	1 cut(s)	115
BmsI	GCATC	1 cut(s)	118
BmuI	ACTGGG	1 cut(s)	115
BpiI	GAAGAC	1 cut(s)	315
Bpu14I	TTCGAA	1 cut(s)	878
BsaAI	YACGTR	1 cut(s)	1072
BsaJI	CCNNGG	2 cut(s)	1216, 1290
BsaWI	WCCGGW	1 cut(s)	1153
Bsc4I	CCNNNNNNNGG	4 cut(s)	241, 585, 1190, 1296
Bse118I	RCCGGY	1 cut(s)	1153
Bse1I	ACTGG	8 cut(s)	110, 197, 235, 453, 504, 547, 1184, 1356
Bse21I	CCTNAGG	1 cut(s)	24
Bse3DI	GCAATG	1 cut(s)	1275
BseBI	CCWGG	2 cut(s)	873, 1218
BseDI	CCNNGG	2 cut(s)	1216, 1290
BseGI	GGATG	2 cut(s)	133, 500
BseLI	CCNNNNNNNGG	4 cut(s)	241, 585, 1190, 1296
BseMI	GCAATG	1 cut(s)	1275
BseMII	CTCAG	5 cut(s)	15, 410, 459, 651, 1100
BseNI	ACTGG	8 cut(s)	110, 197, 235, 453, 504, 547, 1184, 1356
BseXI	GCAGC	4 cut(s)	232, 653, 685, 794
BseYI	CCCAGC	1 cut(s)	1247
BsgI	GTGCAG	1 cut(s)	660
BshFI	GGCC	3 cut(s)	778, 825, 1214
BshTI	ACCGGT	1 cut(s)	1153
BsiSI	CCGG	2 cut(s)	707, 1154
BslFI	GGGAC	5 cut(s)	416, 439, 1039, 1324, 1362
BslI	CCNNNNNNNGG	4 cut(s)	241, 585, 1190, 1296
BsmAI	GTCTC	2 cut(s)	63, 334
BsmFI	GGGAC	5 cut(s)	416, 439, 1039, 1324, 1362
BsnI	GGCC	3 cut(s)	778, 825, 1214
Bsp119I	TTCGAA	1 cut(s)	878
Bsp143I	GATC	6 cut(s)	100, 145, 589, 857, 923, 1196
Bsp19I	CCATGG	1 cut(s)	1290
BspACI	CCGC	3 cut(s)	400, 765, 1211
BspANI	GGCC	3 cut(s)	778, 825, 1214
BspCNI	CTCAG	5 cut(s)	16, 411, 458, 652, 1101
BspLI	GGNNCC	5 cut(s)	404, 405, 451, 591, 1215
BspMI	ACCTGC	1 cut(s)	26
BspPI	GGATC	6 cut(s)	153, 584, 597, 865, 918, 1204
BspQI	GCTCTTC	1 cut(s)	232
BspT104I	TTCGAA	1 cut(s)	878
BsrDI	GCAATG	1 cut(s)	1275
BsrFI	RCCGGY	1 cut(s)	1153
BsrI	ACTGG	8 cut(s)	110, 197, 235, 453, 504, 547, 1184, 1356
BssAI	RCCGGY	1 cut(s)	1153
BssECI	CCNNGG	2 cut(s)	1216, 1290
BssMI	GATC	6 cut(s)	100, 145, 589, 857, 923, 1196
BssT1I	CCWWGG	1 cut(s)	1290
Bst2UI	CCWGG	2 cut(s)	873, 1218
Bst4CI	ACNGT	3 cut(s)	489, 912, 1165
Bst6I	CTCTTC	1 cut(s)	232
BstBAI	YACGTR	1 cut(s)	1072
BstBI	TTCGAA	1 cut(s)	878
BstC8I	GCNNGC	2 cut(s)	646, 780
BstDEI	CTNAG	8 cut(s)	24, 292, 333, 419, 445, 660, 1109, 1173
BstDSI	CCRYGG	1 cut(s)	1290
BstF5I	GGATG	2 cut(s)	133, 500
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	6 cut(s)	103, 148, 592, 860, 926, 1199
BstMAI	GTCTC	2 cut(s)	63, 334
BstMBI	GATC	6 cut(s)	100, 145, 589, 857, 923, 1196
BstMWI	GCNNNNNNNGC	1 cut(s)	231
BstNI	CCWGG	2 cut(s)	873, 1218
BstNSI	RCATGY	1 cut(s)	600
BstSCI	CCNGG	2 cut(s)	871, 1216
BstV1I	GCAGC	4 cut(s)	232, 653, 685, 794
BstV2I	GAAGAC	1 cut(s)	315
BstX2I	RGATCY	4 cut(s)	145, 589, 923, 1196
BstYI	RGATCY	4 cut(s)	145, 589, 923, 1196
Bsu36I	CCTNAGG	1 cut(s)	24
BsuI	GTATCC	1 cut(s)	1003
BsuRI	GGCC	3 cut(s)	778, 825, 1214
BtgI	CCRYGG	1 cut(s)	1290
BtsCI	GGATG	2 cut(s)	133, 500
BtsI	GCAGTG	1 cut(s)	643
BtsIMutI	CAGTG	3 cut(s)	103, 460, 643
BveI	ACCTGC	1 cut(s)	26
Cac8I	GCNNGC	2 cut(s)	646, 780
CaiI	CAGNNNCTG	1 cut(s)	1108
CfoI	GCGC	1 cut(s)	133
Cfr10I	RCCGGY	1 cut(s)	1153
Cfr13I	GGNCC	6 cut(s)	299, 403, 450, 888, 1046, 1213
CseI	GACGC	1 cut(s)	60
Csp6I	GTAC	2 cut(s)	913, 1036
CspAI	ACCGGT	1 cut(s)	1153
CspCI	CAANNNNNGTGG	2 cut(s)	1053, 1088
CviAII	CATG	2 cut(s)	597, 1291
CviQI	GTAC	2 cut(s)	913, 1036
DdeI	CTNAG	8 cut(s)	24, 292, 333, 419, 445, 660, 1109, 1173
DpnI	GATC	6 cut(s)	102, 147, 591, 859, 925, 1198
DpnII	GATC	6 cut(s)	100, 145, 589, 857, 923, 1196
Eam1104I	CTCTTC	1 cut(s)	232
EarI	CTCTTC	1 cut(s)	232
Eco130I	CCWWGG	1 cut(s)	1290
Eco47I	GGWCC	5 cut(s)	299, 403, 450, 888, 1046
Eco72I	CACGTG	1 cut(s)	1072
Eco81I	CCTNAGG	1 cut(s)	24
EcoO109I	RGGNCCY	2 cut(s)	403, 888
EcoRII	CCWGG	2 cut(s)	871, 1216
EcoT14I	CCWWGG	1 cut(s)	1290
EcoT22I	ATGCAT	1 cut(s)	1011
ErhI	CCWWGG	1 cut(s)	1290
FaeI	CATG	2 cut(s)	600, 1294
FalI	AAGNNNNNCTT	2 cut(s)	1105, 1137
FaqI	GGGAC	5 cut(s)	416, 439, 1039, 1324, 1362
FatI	CATG	2 cut(s)	596, 1290
FauI	CCCGC	1 cut(s)	393
Fnu4HI	GCNGC	5 cut(s)	246, 642, 674, 783, 1212
FokI	GGATG	2 cut(s)	140, 487
Fsp4HI	GCNGC	5 cut(s)	246, 642, 674, 783, 1212
FspBI	CTAG	3 cut(s)	155, 849, 1136
GlaI	GCGC	1 cut(s)	132
GluI	GCNGC	5 cut(s)	246, 642, 674, 783, 1212
GsaI	CCCAGC	1 cut(s)	1251
HaeIII	GGCC	3 cut(s)	778, 825, 1214
HapII	CCGG	2 cut(s)	707, 1154
HgaI	GACGC	1 cut(s)	60
HhaI	GCGC	1 cut(s)	133
Hin1II	CATG	2 cut(s)	600, 1294
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HindIII	AAGCTT	1 cut(s)	478
HinfI	GANTC	7 cut(s)	715, 815, 1105, 1127, 1242, 1252, 1300
HpaII	CCGG	2 cut(s)	707, 1154
HphI	GGTGA	1 cut(s)	275
Hpy188I	TCNGA	5 cut(s)	661, 1104, 1110, 1257, 1305
Hpy188III	TCNNGA	5 cut(s)	116, 155, 339, 757, 819
Hpy99I	CGWCG	1 cut(s)	54
HpyAV	CCTTC	5 cut(s)	59, 804, 993, 1107, 1300
HpyCH4III	ACNGT	3 cut(s)	489, 912, 1165
HpyCH4IV	ACGT	2 cut(s)	575, 1071
HpyCH4V	TGCA	8 cut(s)	35, 248, 641, 962, 1009, 1031, 1263, 1330
HpyF10VI	GCNNNNNNNGC	1 cut(s)	231
HpyF3I	CTNAG	8 cut(s)	24, 292, 333, 419, 445, 660, 1109, 1173
HpySE526I	ACGT	2 cut(s)	575, 1071
Hsp92II	CATG	2 cut(s)	600, 1294
HspAI	GCGC	1 cut(s)	131
KflI	GGGWCCC	1 cut(s)	403
Kzo9I	GATC	6 cut(s)	100, 145, 589, 857, 923, 1196
LguI	GCTCTTC	1 cut(s)	232
LmnI	GCTCC	2 cut(s)	1285, 1374
Lsp1109I	GCAGC	4 cut(s)	232, 653, 685, 794
LweI	GCATC	1 cut(s)	118
MaeI	CTAG	3 cut(s)	155, 849, 1136
MaeII	ACGT	2 cut(s)	575, 1071
MaeIII	GTNAC	3 cut(s)	613, 1156, 1285
MalI	GATC	6 cut(s)	102, 147, 591, 859, 925, 1198
MboI	GATC	6 cut(s)	100, 145, 589, 857, 923, 1196
MboII	GAAGA	9 cut(s)	20, 131, 219, 297, 315, 423, 825, 855, 1189
MfeI	CAATTG	1 cut(s)	559
MflI	RGATCY	4 cut(s)	145, 589, 923, 1196
MluCI	AATT	6 cut(s)	256, 473, 559, 799, 1041, 1228
MlyI	GAGTC	3 cut(s)	724, 1261, 1309
MmeI	TCCRAC	1 cut(s)	617
Mph1103I	ATGCAT	1 cut(s)	1011
MseI	TTAA	4 cut(s)	281, 476, 798, 1140
MslI	CAYNNNNRTG	2 cut(s)	183, 1014
MspI	CCGG	2 cut(s)	707, 1154
MspR9I	CCNGG	2 cut(s)	873, 1218
MunI	CAATTG	1 cut(s)	559
MvaI	CCWGG	2 cut(s)	873, 1218
MwoI	GCNNNNNNNGC	1 cut(s)	231
NcoI	CCATGG	1 cut(s)	1290
NdeII	GATC	6 cut(s)	100, 145, 589, 857, 923, 1196
NlaIII	CATG	2 cut(s)	600, 1294
NlaIV	GGNNCC	5 cut(s)	404, 405, 451, 591, 1215
NmuCI	GTSAC	1 cut(s)	613
NsiI	ATGCAT	1 cut(s)	1011
NspI	RCATGY	1 cut(s)	600
NspV	TTCGAA	1 cut(s)	878
PciI	ACATGT	1 cut(s)	596
PciSI	GCTCTTC	1 cut(s)	232
PfeI	GAWTC	4 cut(s)	815, 1105, 1127, 1242
PflMI	CCANNNNNTGG	2 cut(s)	1190, 1296
PinAI	ACCGGT	1 cut(s)	1153
PkrI	GCNGC	5 cut(s)	247, 643, 675, 784, 1213
PleI	GAGTC	3 cut(s)	723, 1260, 1308
PmaCI	CACGTG	1 cut(s)	1072
PmlI	CACGTG	1 cut(s)	1072
PpsI	GAGTC	3 cut(s)	723, 1260, 1308
Ppu21I	YACGTR	1 cut(s)	1072
PpuMI	RGGWCCY	2 cut(s)	403, 888
PscI	ACATGT	1 cut(s)	596
PshBI	ATTAAT	1 cut(s)	798
Psp5II	RGGWCCY	2 cut(s)	403, 888
Psp6I	CCWGG	2 cut(s)	871, 1216
PspCI	CACGTG	1 cut(s)	1072
PspFI	CCCAGC	1 cut(s)	1247
PspGI	CCWGG	2 cut(s)	871, 1216
PspN4I	GGNNCC	5 cut(s)	404, 405, 451, 591, 1215
PspPI	GGNCC	6 cut(s)	299, 403, 450, 888, 1046, 1213
PspPPI	RGGWCCY	2 cut(s)	403, 888
PstNI	CAGNNNCTG	1 cut(s)	1108
PsuI	RGATCY	4 cut(s)	145, 589, 923, 1196
RsaI	GTAC	2 cut(s)	914, 1037
RsaNI	GTAC	2 cut(s)	913, 1036
RseI	CAYNNNNRTG	2 cut(s)	183, 1014
SapI	GCTCTTC	1 cut(s)	232
SaqAI	TTAA	4 cut(s)	281, 476, 798, 1140
SatI	GCNGC	5 cut(s)	246, 642, 674, 783, 1212
Sau3AI	GATC	6 cut(s)	100, 145, 589, 857, 923, 1196
Sau96I	GGNCC	6 cut(s)	299, 403, 450, 888, 1046, 1213
SchI	GAGTC	3 cut(s)	724, 1261, 1309
ScrFI	CCNGG	2 cut(s)	873, 1218
SfaNI	GCATC	1 cut(s)	118
SfuI	TTCGAA	1 cut(s)	878
SinI	GGWCC	5 cut(s)	299, 403, 450, 888, 1046
SmiMI	CAYNNNNRTG	2 cut(s)	183, 1014
Sse9I	AATT	6 cut(s)	256, 473, 559, 799, 1041, 1228
SsiI	CCGC	3 cut(s)	400, 765, 1211
SspMI	CTAG	3 cut(s)	155, 849, 1136
StyD4I	CCNGG	2 cut(s)	871, 1216
StyI	CCWWGG	1 cut(s)	1290
TaaI	ACNGT	3 cut(s)	489, 912, 1165
TaiI	ACGT	2 cut(s)	578, 1074
TaqI	TCGA	1 cut(s)	878
TaqII	GACCGA	1 cut(s)	1356
TasI	AATT	6 cut(s)	256, 473, 559, 799, 1041, 1228
TatI	WGTACW	2 cut(s)	912, 1035
TauI	GCSGC	1 cut(s)	1214
TfiI	GAWTC	4 cut(s)	815, 1105, 1127, 1242
Tru1I	TTAA	4 cut(s)	281, 476, 798, 1140
Tru9I	TTAA	4 cut(s)	281, 476, 798, 1140
TscAI	CASTG	3 cut(s)	110, 460, 643
TseFI	GTSAC	1 cut(s)	613
TseI	GCWGC	4 cut(s)	245, 641, 673, 782
Tsp45I	GTSAC	1 cut(s)	613
TspDTI	ATGAA	4 cut(s)	17, 479, 645, 825
TspGWI	ACGGA	2 cut(s)	309, 727
TspRI	CASTG	3 cut(s)	110, 460, 643
Van91I	CCANNNNNTGG	2 cut(s)	1190, 1296
VpaK11BI	GGWCC	5 cut(s)	299, 403, 450, 888, 1046
VspI	ATTAAT	1 cut(s)	798
XapI	RAATTY	2 cut(s)	256, 1228
XbaI	TCTAGA	1 cut(s)	154
XceI	RCATGY	1 cut(s)	600
XspI	CTAG	3 cut(s)	155, 849, 1136
Zsp2I	ATGCAT	1 cut(s)	1011

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.