pycom11g20860

Cytochrome c-type biogenesis ccda-like chloroplastic protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0012312
Physical Location & Seq
Forward (+)
24020360 .. 24024370
4011 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1101 bp
ATGCAGATGAATTTGGCTATCAACAATTGCGGCAGTTATGGAATTAATCCTTTCACAATTTCAAGCTGCAATGGTGGCCAGAAAATCAGTCACAGTAAAAAATATATGGTGCCCAGCAGAATGCTGAAGGGACCTGCTTCTACTTCTACACCTCAGGATGCTTGCCAAGATTCTGCATCATTGGCAAAGACTGATAGAAGCAGCAGCACCAGCAGCTTCCCAATTAAGACTTTTGTAAATTCCATGGCAGCGGCGAATTTGGTCTTTGCCGACTTGGCAAAGGCTAGCACGGAGAAAATGTTGGACGGTGCTGTTTCAGTATATACCTTGGCTGATGGAGGCCCCGGAGAATGGTTTGGAGGCTTCCTATTTTCTGCTGGACAAGATGCTAATGAAGCTGTTCAAGACCAGCTATCAGCCCTCAGTTTCTCTAGTTTGGCAGTTATCTTTGGGGCTGGGCTTGTGACCAGCCTTTCTCCTTGTACTCTTAGCGTTTTACCGCTGACCCTAGGTTACATAGGAGCATTTGGCTCAGGGAAAAGCAAGGCAGAGGTTCTTGGGAATTCAATTGCGTTCTCCTTAGGATTGGCAACTACACTTGCACTCTTAGGCATAGGAGCCTCATTTGCTGGAAAGGCATATGGACAGACAGGGCAGGGGTTACCTTTGACTGCTTCAGGTTTAGCTATTATTATGGGCCTGAATCTCCTTGAGGTAATTGAACTACAGCTCCCCTCATTTTTTAGTAATTTTGATCCCCGGGCTGCTGCTGCTAATTTCCCTTCAAGTGTACAAGCATATCTAGCTGGGCTTACATTTGCTTTAGCTGCCTCGCCATGCAGTACGCCAGTGCTGGCCACTCTGCTTGGATATGTTGCTACGTCTAAGAATCCAGTGATAGGAGGCAGCTTACTTTTGACATACACAAGTGGTTATGTTGCTCCTTTACTTCTTGCTGCTTCTTTTGCTGGAGCACTGCAGAGCCTACTTTCATTTCGCAAATTTTCAGCATGGATAAACCCAATCAGCGGCGCACTTCTGTTAGGAGGGGGTGTGTATACTTTCTTGGATAGGCTTTTCCCAGTTACAATGGCAATGTAG

Protein Analysis

367

Amino Acids

37.51

Weight (kDa)

8.21

Isoelectric Point (pI)

32.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DsbD_TM PF02683 145 - 326 7.6e-22 Cytochrome C biogenesis protein transmembrane domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012312)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54290 AT5G54290
fragaria_vesca FvH4_3g20940 FvH4_3g20940 FvH4_3g20940
malus_domestica MD11G1237300.v1.1
prunus_persica Prupe.4G189900_v2.0.a1 Prupe.4G189900_v2.0.a1
pyrus_communis pycom11g20860
rosa_chinensis RchiOBHm_Chr5g0035361
rosa_laevigata RLG00000033620
rosa_multiflora Rmu_co8507677.1_g000001
rosa_roxburghii Rroxscaffold_1G00045040
rosa_rugosa Rorug05G0151400
rosa_samantha Rh5AG244600 Rh5BG244100 Rh5CG275900 Rh5DG253200
rosa_wichuraiana Rw5G022340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 142
AccB1I GGYRCC 1 cut(s) 109
AccI GTMKAC 1 cut(s) 1058
AciI CCGC 4 cut(s) 30, 251, 500, 1029
AclWI GGATC 1 cut(s) 749
AcoI YGGCCR 2 cut(s) 76, 855
AcsI RAATTY 5 cut(s) 10, 238, 256, 562, 1001
AcuI CTGAAG 2 cut(s) 146, 660
AfaI GTAC 3 cut(s) 484, 792, 844
AfiI CCNNNNNNNGG 3 cut(s) 351, 899, 1028
AgsI TTSAA 5 cut(s) 63, 404, 567, 722, 786
AloI GAACNNNNNNTCC 2 cut(s) 714, 746
AluBI AGCT 9 cut(s) 66, 216, 398, 412, 686, 730, 806, 827, 909
AluI AGCT 9 cut(s) 66, 216, 398, 412, 686, 730, 806, 827, 909
Alw21I GWGCWC 1 cut(s) 976
AlwI GGATC 1 cut(s) 749
Ama87I CYCGRG 1 cut(s) 759
AoxI GGCC 4 cut(s) 76, 340, 697, 855
ApoI RAATTY 5 cut(s) 10, 238, 256, 562, 1001
AseI ATTAAT 1 cut(s) 45
Asp700I GAANNNNTTC 1 cut(s) 399
AspA2I CCTAGG 1 cut(s) 508
AspLEI GCGC 1 cut(s) 1034
AspS9I GGNCC 3 cut(s) 131, 341, 697
AsuC2I CCSGG 3 cut(s) 345, 760, 761
AsuNHI GCTAGC 1 cut(s) 284
AvaI CYCGRG 1 cut(s) 759
AvaII GGWCC 1 cut(s) 131
AvrII CCTAGG 1 cut(s) 508
AxyI CCTNAGG 2 cut(s) 153, 580
BaeGI GKGCMC 1 cut(s) 114
BalI TGGCCA 2 cut(s) 78, 857
BanI GGYRCC 1 cut(s) 109
Bbv12I GWGCWC 1 cut(s) 976
BccI CCATC 1 cut(s) 329
BcnI CCSGG 3 cut(s) 345, 760, 761
BfaI CTAG 4 cut(s) 285, 432, 509, 803
BfmI CTRYAG 2 cut(s) 725, 977
BfuAI ACCTGC 1 cut(s) 142
BglI GCCNNNNNGGC 1 cut(s) 275
BlnI CCTAGG 1 cut(s) 508
Bme1390I CCNGG 3 cut(s) 345, 760, 761
Bme18I GGWCC 1 cut(s) 131
BmeT110I CYCGRG 1 cut(s) 759
BmgT120I GGNCC 3 cut(s) 131, 341, 697
BmiI GGNNCC 4 cut(s) 111, 132, 343, 619
BmrFI CCNGG 3 cut(s) 345, 760, 761
BmrI ACTGGG 1 cut(s) 1076
BmsI GCATC 3 cut(s) 148, 185, 376
BmtI GCTAGC 1 cut(s) 288
BmuI ACTGGG 1 cut(s) 1076
BpmI CTGGAG 1 cut(s) 990
Bpu10I CCTNAGC 1 cut(s) 532
BpuEI CTTGAG 1 cut(s) 731
BpuMI CCSGG 3 cut(s) 345, 760, 761
BsaJI CCNNGG 6 cut(s) 243, 327, 343, 508, 758, 759
BsaXI ACNNNNNCTCC 6 cut(s) 284, 314, 714, 744, 1038, 1068
Bsc4I CCNNNNNNNGG 3 cut(s) 351, 899, 1028
Bse1I ACTGG 3 cut(s) 848, 893, 1082
Bse21I CCTNAGG 2 cut(s) 153, 580
Bse3DI GCAATG 2 cut(s) 76, 1101
BseDI CCNNGG 6 cut(s) 243, 327, 343, 508, 758, 759
BseGI GGATG 1 cut(s) 163
BseLI CCNNNNNNNGG 3 cut(s) 351, 899, 1028
BseMI GCAATG 2 cut(s) 76, 1101
BseMII CTCAG 3 cut(s) 167, 436, 546
BseNI ACTGG 3 cut(s) 848, 893, 1082
BseSI GKGCMC 1 cut(s) 114
BseYI CCCAGC 3 cut(s) 113, 455, 806
BshFI GGCC 4 cut(s) 78, 342, 699, 857
BshNI GGYRCC 1 cut(s) 109
BsiHKAI GWGCWC 1 cut(s) 976
BsiHKCI CYCGRG 1 cut(s) 759
BsiSI CCGG 2 cut(s) 345, 760
BslFI GGGAC 1 cut(s) 144
BslI CCNNNNNNNGG 3 cut(s) 351, 899, 1028
BsmFI GGGAC 1 cut(s) 144
BsmI GAATGC 1 cut(s) 126
BsnI GGCC 4 cut(s) 78, 342, 699, 857
BsoBI CYCGRG 1 cut(s) 759
Bsp1286I GDGCHC 2 cut(s) 114, 976
Bsp1407I TGTACA 1 cut(s) 790
Bsp143I GATC 1 cut(s) 754
Bsp19I CCATGG 1 cut(s) 243
BspACI CCGC 4 cut(s) 30, 251, 500, 1029
BspANI GGCC 4 cut(s) 78, 342, 699, 857
BspCNI CTCAG 3 cut(s) 166, 435, 545
BspLI GGNNCC 4 cut(s) 111, 132, 343, 619
BspMAI CTGCAG 1 cut(s) 981
BspMI ACCTGC 1 cut(s) 142
BspOI GCTAGC 1 cut(s) 288
BspPI GGATC 1 cut(s) 749
BspT107I GGYRCC 1 cut(s) 109
BsrDI GCAATG 2 cut(s) 76, 1101
BsrGI TGTACA 1 cut(s) 790
BsrI ACTGG 3 cut(s) 848, 893, 1082
BssECI CCNNGG 6 cut(s) 243, 327, 343, 508, 758, 759
BssMI GATC 1 cut(s) 754
BssNAI GTATAC 1 cut(s) 1059
BssT1I CCWWGG 3 cut(s) 243, 327, 508
Bst1107I GTATAC 1 cut(s) 1059
Bst4CI ACNGT 2 cut(s) 95, 308
BstAUI TGTACA 1 cut(s) 790
BstC8I GCNNGC 3 cut(s) 163, 286, 855
BstDEI CTNAG 7 cut(s) 153, 422, 488, 532, 580, 607, 885
BstDSI CCRYGG 1 cut(s) 243
BstEII GGTNACC 1 cut(s) 660
BstF5I GGATG 1 cut(s) 163
BstHHI GCGC 1 cut(s) 1034
BstKTI GATC 1 cut(s) 757
BstMBI GATC 1 cut(s) 754
BstPI GGTNACC 1 cut(s) 660
BstSCI CCNGG 3 cut(s) 343, 758, 759
BstSFI CTRYAG 2 cut(s) 725, 977
BstSLI GKGCMC 1 cut(s) 114
BstZ17I GTATAC 1 cut(s) 1059
Bsu36I CCTNAGG 2 cut(s) 153, 580
BsuRI GGCC 4 cut(s) 78, 342, 699, 857
BtgI CCRYGG 1 cut(s) 243
BtsCI GGATG 1 cut(s) 163
BtsI GCAGTG 1 cut(s) 974
BtsIMutI CAGTG 3 cut(s) 855, 900, 974
BveI ACCTGC 1 cut(s) 142
Cac8I GCNNGC 3 cut(s) 163, 286, 855
CfoI GCGC 1 cut(s) 1034
Cfr13I GGNCC 3 cut(s) 131, 341, 697
Cfr9I CCCGGG 1 cut(s) 759
Csp6I GTAC 3 cut(s) 483, 791, 843
CspCI CAANNNNNGTGG 2 cut(s) 847, 882
CviAII CATG 3 cut(s) 244, 837, 1011
CviQI GTAC 3 cut(s) 483, 791, 843
DdeI CTNAG 7 cut(s) 153, 422, 488, 532, 580, 607, 885
DpnI GATC 1 cut(s) 756
DpnII GATC 1 cut(s) 754
EaeI YGGCCR 2 cut(s) 76, 855
Eco130I CCWWGG 3 cut(s) 243, 327, 508
Eco47I GGWCC 1 cut(s) 131
Eco57I CTGAAG 2 cut(s) 146, 660
Eco81I CCTNAGG 2 cut(s) 153, 580
Eco88I CYCGRG 1 cut(s) 759
Eco91I GGTNACC 1 cut(s) 660
EcoO109I RGGNCCY 2 cut(s) 131, 341
EcoO65I GGTNACC 1 cut(s) 660
EcoRI GAATTC 1 cut(s) 562
EcoT14I CCWWGG 3 cut(s) 243, 327, 508
ErhI CCWWGG 3 cut(s) 243, 327, 508
FaeI CATG 3 cut(s) 247, 840, 1014
FaqI GGGAC 1 cut(s) 144
FatI CATG 3 cut(s) 243, 836, 1010
FauNDI CATATG 1 cut(s) 640
FblI GTMKAC 1 cut(s) 1058
FokI GGATG 1 cut(s) 170
FspBI CTAG 4 cut(s) 285, 432, 509, 803
GlaI GCGC 1 cut(s) 1033
GsaI CCCAGC 3 cut(s) 117, 459, 810
GsuI CTGGAG 1 cut(s) 990
HaeIII GGCC 4 cut(s) 78, 342, 699, 857
HapII CCGG 2 cut(s) 345, 760
HhaI GCGC 1 cut(s) 1034
Hin1II CATG 3 cut(s) 247, 840, 1014
Hin6I GCGC 1 cut(s) 1032
HinP1I GCGC 1 cut(s) 1032
HinfI GANTC 3 cut(s) 170, 703, 889
HpaII CCGG 2 cut(s) 345, 760
Hpy166II GTNNAC 2 cut(s) 791, 1059
Hpy188III TCNNGA 2 cut(s) 155, 404
Hpy8I GTNNAC 2 cut(s) 791, 1059
HpyAV CCTTC 2 cut(s) 121, 792
HpyCH4III ACNGT 2 cut(s) 95, 308
HpyCH4IV ACGT 1 cut(s) 881
HpyCH4V TGCA 6 cut(s) 4, 69, 176, 602, 840, 979
HpyF3I CTNAG 7 cut(s) 153, 422, 488, 532, 580, 607, 885
HpySE526I ACGT 1 cut(s) 881
Hsp92II CATG 3 cut(s) 247, 840, 1014
HspAI GCGC 1 cut(s) 1032
Kzo9I GATC 1 cut(s) 754
LmnI GCTCC 5 cut(s) 521, 617, 735, 946, 971
LweI GCATC 3 cut(s) 148, 185, 376
MaeI CTAG 4 cut(s) 285, 432, 509, 803
MaeII ACGT 1 cut(s) 881
MaeIII GTNAC 5 cut(s) 89, 463, 512, 660, 1084
MalI GATC 1 cut(s) 756
MboI GATC 1 cut(s) 754
MfeI CAATTG 2 cut(s) 25, 567
MhlI GDGCHC 2 cut(s) 114, 976
MlsI TGGCCA 2 cut(s) 78, 857
MluNI TGGCCA 2 cut(s) 78, 857
MmeI TCCRAC 1 cut(s) 282
Mox20I TGGCCA 2 cut(s) 78, 857
MroXI GAANNNNTTC 1 cut(s) 399
MscI TGGCCA 2 cut(s) 78, 857
MseI TTAA 2 cut(s) 45, 225
Msp20I TGGCCA 2 cut(s) 78, 857
MspA1I CMGCKG 3 cut(s) 251, 502, 1029
MspI CCGG 2 cut(s) 345, 760
MspR9I CCNGG 3 cut(s) 345, 760, 761
MunI CAATTG 2 cut(s) 25, 567
Mva1269I GAATGC 1 cut(s) 126
NciI CCSGG 3 cut(s) 345, 760, 761
NcoI CCATGG 1 cut(s) 243
NdeI CATATG 1 cut(s) 640
NdeII GATC 1 cut(s) 754
NheI GCTAGC 1 cut(s) 284
NlaIII CATG 3 cut(s) 247, 840, 1014
NlaIV GGNNCC 4 cut(s) 111, 132, 343, 619
NmuCI GTSAC 2 cut(s) 89, 463
PctI GAATGC 1 cut(s) 126
PdmI GAANNNNTTC 1 cut(s) 399
PfeI GAWTC 3 cut(s) 170, 703, 889
PpuMI RGGWCCY 1 cut(s) 131
PshBI ATTAAT 1 cut(s) 45
Psp5II RGGWCCY 1 cut(s) 131
PspEI GGTNACC 1 cut(s) 660
PspFI CCCAGC 3 cut(s) 113, 455, 806
PspN4I GGNNCC 4 cut(s) 111, 132, 343, 619
PspPI GGNCC 3 cut(s) 131, 341, 697
PspPPI RGGWCCY 1 cut(s) 131
PstI CTGCAG 1 cut(s) 981
RsaI GTAC 3 cut(s) 484, 792, 844
RsaNI GTAC 3 cut(s) 483, 791, 843
SaqAI TTAA 2 cut(s) 45, 225
Sau3AI GATC 1 cut(s) 754
Sau96I GGNCC 3 cut(s) 131, 341, 697
ScrFI CCNGG 3 cut(s) 345, 760, 761
SduI GDGCHC 2 cut(s) 114, 976
SfaNI GCATC 3 cut(s) 148, 185, 376
SfcI CTRYAG 2 cut(s) 725, 977
SinI GGWCC 1 cut(s) 131
SmaI CCCGGG 1 cut(s) 761
SmlI CTYRAG 1 cut(s) 710
SmoI CTYRAG 1 cut(s) 710
SsiI CCGC 4 cut(s) 30, 251, 500, 1029
SspMI CTAG 4 cut(s) 285, 432, 509, 803
StyD4I CCNGG 3 cut(s) 343, 758, 759
StyI CCWWGG 3 cut(s) 243, 327, 508
TaaI ACNGT 2 cut(s) 95, 308
TaiI ACGT 1 cut(s) 884
TatI WGTACW 2 cut(s) 482, 790
TauI GCSGC 3 cut(s) 33, 254, 1032
TfiI GAWTC 3 cut(s) 170, 703, 889
Tru1I TTAA 2 cut(s) 45, 225
Tru9I TTAA 2 cut(s) 45, 225
TscAI CASTG 3 cut(s) 855, 900, 981
TseFI GTSAC 2 cut(s) 89, 463
Tsp45I GTSAC 2 cut(s) 89, 463
TspDTI ATGAA 3 cut(s) 23, 408, 981
TspGWI ACGGA 1 cut(s) 305
TspMI CCCGGG 1 cut(s) 759
TspRI CASTG 3 cut(s) 855, 900, 981
VpaK11BI GGWCC 1 cut(s) 131
VspI ATTAAT 1 cut(s) 45
XapI RAATTY 5 cut(s) 10, 238, 256, 562, 1001
XmaI CCCGGG 1 cut(s) 759
XmaJI CCTAGG 1 cut(s) 508
XmiI GTMKAC 1 cut(s) 1058
XmnI GAANNNNTTC 1 cut(s) 399
XspI CTAG 4 cut(s) 285, 432, 509, 803
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.