Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0004446

Physical Location & Seq

Genomic Coordinates Reverse (-)

24036961 .. 24038829

Gene Structure 1869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGCTTTCAGTGGATGGTCCAAGTGAGAATGGATCGGATGCAGCATCAGCTGAGGATAATGATTGGGCTGGTTTTCAGTCTGCTGAAAAGGCATCGACAGCTGAGAAAACTGGTCCATCAAATGCAGCAGAGAACAATGTCAAATCTTCATCAGGAATTGACGATCTATTTAAAGATGCACCTTCGTTAACACCTGTTTCAGAGAAACCCCAGAAAGACGTAAAAACTGACATTATGAGTCTTTTTGAGAAGTCGAACATGGTGTCACCCTTCTCAATGCATCAGCAGCAACTAGCAATGCTGGCTCAGCACCAGTCTCTTCTCATGGCTGCAGCTAAATCTGGCGCAGATCAAAAGTTTCCTGGTATTATTCAACAACCTGTGTCCAACGGAAGCAATTTACCTTCCCAAGGTTGGTCAAACGTTGGCTACCAATATCCTGGATTGGTGATGCCTGTAGATGGGCAGGCTGATCTACAGAAAGTTCCACAGAGTCAGACAAAGACCATGGGACAGGCACATCCACTGGGGACCTCTGTTCCGTATTCAGCATCTAGCTTTTACGGTATGGCCCAAGTTAACCCAGTTAATGGCGTGACAAACGATGGGGCGAAGAAGACTCAATCACCATCTCCGGTATCATCTTCAACTTCTGCACAATCAGGAAAGGATTATGATTTCTCTTCTTTAACACAATTGATGTTCGCAAAACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0007275 GO:0008150 GO:0009791 GO:0009838 GO:0009908 GO:0009987 GO:0010227 GO:0012505 GO:0016043 GO:0016192 GO:0022414 GO:0022607 GO:0030135 GO:0030136 GO:0030276 GO:0030308 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0034622 GO:0035459 GO:0035652 GO:0040008 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0043933 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045926 GO:0048367 GO:0048437 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0060858 GO:0061458 GO:0065003 GO:0065007 GO:0065009 GO:0071840 GO:0090567 GO:0090630 GO:0097708 GO:0098791 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ArfGap

Protein Analysis

239

Amino Acids

25.03

Weight (kDa)

4.97

Isoelectric Point (pI)

50.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004446)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54310
fragaria_vesca	FvH4_3g20910 FvH4_3g20910 FvH4_3g20910 FvH4_3g20910 FvH4_3g20910 FvH4_3g20910
malus_domestica	MD03G1219400.v1.1 MD11G1237500.v1.1
prunus_persica	Prupe.4G189700_v2.0.a1 Prupe.4G189700_v2.0.a1 Prupe.4G189700_v2.0.a1
pyrus_communis	pycom03g16860 pycom11g20880
rosa_chinensis	RchiOBHm_Chr5g0035341
rosa_laevigata	RLG00000007187 RLG00000033618
rosa_multiflora	Rmu_sc0007948.1_g000014
rosa_roxburghii	Rroxscaffold_1G00045060 Rroxscaffold_5G00369750
rosa_rugosa	Rorug04G0221700 Rorug04G0221700 Rorug05G0151300 Rorug05G0151400 Rorug05G0151400
rosa_samantha	Rh4AG278900 Rh4BG284300 Rh5AG244400 Rh5BG243900 Rh5CG275700 Rh5DG252900
rosa_wichuraiana	Rw5G022320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	590
AclI	AACGTT	1 cut(s)	423
AclWI	GGATC	1 cut(s)	40
AfiI	CCNNNNNNNGG	4 cut(s)	410, 414, 461, 590
AgsI	TTSAA	2 cut(s)	374, 648
AjnI	CCWGG	2 cut(s)	361, 439
AluBI	AGCT	4 cut(s)	50, 101, 335, 558
AluI	AGCT	4 cut(s)	50, 101, 335, 558
Alw26I	GTCTC	1 cut(s)	321
AlwI	GGATC	1 cut(s)	40
AoxI	GGCC	1 cut(s)	570
ApeKI	GCWGC	5 cut(s)	41, 125, 286, 329, 332
ArsI	GACNNNNNNTTYG	2 cut(s)	248, 280
AspLEI	GCGC	1 cut(s)	347
AspS9I	GGNCC	4 cut(s)	17, 113, 531, 571
AsuHPI	GGTGA	3 cut(s)	258, 460, 618
AvaII	GGWCC	3 cut(s)	17, 113, 531
BbsI	GAAGAC	1 cut(s)	623
BbvCI	CCTCAGC	1 cut(s)	51
BbvI	GCAGC	5 cut(s)	53, 137, 298, 316, 344
BccI	CCATC	5 cut(s)	8, 124, 455, 599, 637
BciT130I	CCWGG	2 cut(s)	363, 441
BcoDI	GTCTC	1 cut(s)	321
BfaI	CTAG	2 cut(s)	293, 555
BfmI	CTRYAG	3 cut(s)	330, 456, 476
BisI	GCNGC	5 cut(s)	42, 126, 287, 330, 333
BlpI	GCTNAGC	1 cut(s)	306
BlsI	GCNGC	5 cut(s)	43, 127, 288, 331, 334
Bme1390I	CCNGG	2 cut(s)	363, 441
Bme18I	GGWCC	3 cut(s)	17, 113, 531
BmgT120I	GGNCC	4 cut(s)	17, 113, 531, 571
BmiI	GGNNCC	1 cut(s)	532
BmrFI	CCNGG	2 cut(s)	363, 441
BmrI	ACTGGG	2 cut(s)	536, 578
BmsI	GCATC	7 cut(s)	28, 53, 101, 166, 289, 441, 560
BmuI	ACTGGG	2 cut(s)	536, 578
BpiI	GAAGAC	1 cut(s)	623
Bpu10I	CCTNAGC	1 cut(s)	51
Bpu1102I	GCTNAGC	1 cut(s)	306
BsaJI	CCNNGG	2 cut(s)	409, 507
BsaWI	WCCGGW	1 cut(s)	634
Bsc4I	CCNNNNNNNGG	4 cut(s)	410, 414, 461, 590
Bse1I	ACTGG	4 cut(s)	115, 313, 531, 584
Bse3DI	GCAATG	1 cut(s)	303
BseBI	CCWGG	2 cut(s)	363, 441
BseDI	CCNNGG	2 cut(s)	409, 507
BseGI	GGATG	3 cut(s)	19, 43, 520
BseLI	CCNNNNNNNGG	4 cut(s)	410, 414, 461, 590
BseMI	GCAATG	1 cut(s)	303
BseMII	CTCAG	3 cut(s)	42, 93, 320
BseNI	ACTGG	4 cut(s)	115, 313, 531, 584
BseXI	GCAGC	5 cut(s)	53, 137, 298, 316, 344
BsgI	GTGCAG	1 cut(s)	639
BshFI	GGCC	1 cut(s)	572
BsiSI	CCGG	1 cut(s)	635
BslFI	GGGAC	2 cut(s)	525, 544
BslI	CCNNNNNNNGG	4 cut(s)	410, 414, 461, 590
BsmAI	GTCTC	1 cut(s)	321
BsmFI	GGGAC	2 cut(s)	525, 544
BsnI	GGCC	1 cut(s)	572
Bsp143I	GATC	4 cut(s)	32, 163, 349, 472
Bsp1720I	GCTNAGC	1 cut(s)	306
Bsp19I	CCATGG	1 cut(s)	507
BspANI	GGCC	1 cut(s)	572
BspCNI	CTCAG	3 cut(s)	43, 94, 319
BspLI	GGNNCC	1 cut(s)	532
BspMAI	CTGCAG	1 cut(s)	334
BspPI	GGATC	1 cut(s)	40
BsrDI	GCAATG	1 cut(s)	303
BsrI	ACTGG	4 cut(s)	115, 313, 531, 584
BssECI	CCNNGG	2 cut(s)	409, 507
BssMI	GATC	4 cut(s)	32, 163, 349, 472
BssT1I	CCWWGG	2 cut(s)	409, 507
Bst2UI	CCWGG	2 cut(s)	363, 441
Bst4CI	ACNGT	1 cut(s)	566
Bst6I	CTCTTC	2 cut(s)	324, 688
BstC8I	GCNNGC	2 cut(s)	303, 468
BstDEI	CTNAG	3 cut(s)	51, 102, 306
BstDSI	CCRYGG	1 cut(s)	507
BstENI	CCTNNNNNAGG	1 cut(s)	408
BstF5I	GGATG	3 cut(s)	19, 43, 520
BstHHI	GCGC	1 cut(s)	347
BstKTI	GATC	4 cut(s)	35, 166, 352, 475
BstMAI	GTCTC	1 cut(s)	321
BstMBI	GATC	4 cut(s)	32, 163, 349, 472
BstMWI	GCNNNNNNNGC	6 cut(s)	47, 89, 98, 286, 302, 307
BstNI	CCWGG	2 cut(s)	363, 441
BstSCI	CCNGG	2 cut(s)	361, 439
BstSFI	CTRYAG	3 cut(s)	330, 456, 476
BstV1I	GCAGC	5 cut(s)	53, 137, 298, 316, 344
BstV2I	GAAGAC	1 cut(s)	623
BstXI	CCANNNNNNTGG	1 cut(s)	440
BsuRI	GGCC	1 cut(s)	572
BtgI	CCRYGG	1 cut(s)	507
BtsCI	GGATG	3 cut(s)	19, 43, 520
BtsIMutI	CAGTG	2 cut(s)	15, 524
Cac8I	GCNNGC	2 cut(s)	303, 468
CfoI	GCGC	1 cut(s)	347
Cfr13I	GGNCC	4 cut(s)	17, 113, 531, 571
CviAII	CATG	3 cut(s)	259, 325, 508
DdeI	CTNAG	3 cut(s)	51, 102, 306
DpnI	GATC	4 cut(s)	34, 165, 351, 474
DpnII	GATC	4 cut(s)	32, 163, 349, 472
DraI	TTTAAA	1 cut(s)	172
Eam1104I	CTCTTC	2 cut(s)	324, 688
EarI	CTCTTC	2 cut(s)	324, 688
Eco130I	CCWWGG	2 cut(s)	409, 507
Eco47I	GGWCC	3 cut(s)	17, 113, 531
EcoNI	CCTNNNNNAGG	1 cut(s)	408
EcoO109I	RGGNCCY	1 cut(s)	531
EcoRII	CCWGG	2 cut(s)	361, 439
EcoT14I	CCWWGG	2 cut(s)	409, 507
EcoT22I	ATGCAT	1 cut(s)	282
ErhI	CCWWGG	2 cut(s)	409, 507
FaeI	CATG	3 cut(s)	262, 328, 511
FaiI	YATR	6 cut(s)	236, 260, 326, 509, 569, 675
FaqI	GGGAC	2 cut(s)	525, 544
FatI	CATG	3 cut(s)	258, 324, 507
Fnu4HI	GCNGC	5 cut(s)	42, 126, 287, 330, 333
FokI	GGATG	3 cut(s)	26, 50, 507
Fsp4HI	GCNGC	5 cut(s)	42, 126, 287, 330, 333
FspBI	CTAG	2 cut(s)	293, 555
GlaI	GCGC	1 cut(s)	346
GluI	GCNGC	5 cut(s)	42, 126, 287, 330, 333
HaeIII	GGCC	1 cut(s)	572
HapII	CCGG	1 cut(s)	635
HhaI	GCGC	1 cut(s)	347
Hin1II	CATG	3 cut(s)	262, 328, 511
Hin6I	GCGC	1 cut(s)	345
HinP1I	GCGC	1 cut(s)	345
HincII	GTYRAC	2 cut(s)	189, 580
HindII	GTYRAC	2 cut(s)	189, 580
HinfI	GANTC	3 cut(s)	238, 493, 619
HpaI	GTTAAC	2 cut(s)	189, 580
HpaII	CCGG	1 cut(s)	635
HphI	GGTGA	3 cut(s)	258, 460, 618
Hpy166II	GTNNAC	2 cut(s)	189, 580
Hpy188I	TCNGA	3 cut(s)	37, 202, 498
Hpy188III	TCNNGA	2 cut(s)	153, 663
Hpy8I	GTNNAC	2 cut(s)	189, 580
HpyAV	CCTTC	3 cut(s)	192, 280, 414
HpyCH4III	ACNGT	1 cut(s)	566
HpyCH4IV	ACGT	2 cut(s)	219, 423
HpyCH4V	TGCA	6 cut(s)	41, 125, 179, 280, 332, 656
HpyF10VI	GCNNNNNNNGC	6 cut(s)	47, 89, 98, 286, 302, 307
HpyF3I	CTNAG	3 cut(s)	51, 102, 306
HpySE526I	ACGT	2 cut(s)	219, 423
Hsp92II	CATG	3 cut(s)	262, 328, 511
HspAI	GCGC	1 cut(s)	345
KspAI	GTTAAC	2 cut(s)	189, 580
Kzo9I	GATC	4 cut(s)	32, 163, 349, 472
Lsp1109I	GCAGC	5 cut(s)	53, 137, 298, 316, 344
LweI	GCATC	7 cut(s)	28, 53, 101, 166, 289, 441, 560
MaeI	CTAG	2 cut(s)	293, 555
MaeII	ACGT	2 cut(s)	219, 423
MaeIII	GTNAC	2 cut(s)	264, 595
MalI	GATC	4 cut(s)	34, 165, 351, 474
MboI	GATC	4 cut(s)	32, 163, 349, 472
MboII	GAAGA	6 cut(s)	138, 311, 625, 628, 636, 675
MfeI	CAATTG	1 cut(s)	695
MluCI	AATT	3 cut(s)	156, 397, 695
MlyI	GAGTC	3 cut(s)	247, 502, 613
MmeI	TCCRAC	1 cut(s)	411
MnlI	CCTC	2 cut(s)	46, 544
Mph1103I	ATGCAT	1 cut(s)	282
MseI	TTAA	5 cut(s)	171, 188, 579, 588, 689
MspA1I	CMGCKG	2 cut(s)	50, 101
MspI	CCGG	1 cut(s)	635
MspR9I	CCNGG	2 cut(s)	363, 441
MunI	CAATTG	1 cut(s)	695
MvaI	CCWGG	2 cut(s)	363, 441
MwoI	GCNNNNNNNGC	6 cut(s)	47, 89, 98, 286, 302, 307
NcoI	CCATGG	1 cut(s)	507
NdeII	GATC	4 cut(s)	32, 163, 349, 472
NlaIII	CATG	3 cut(s)	262, 328, 511
NlaIV	GGNNCC	1 cut(s)	532
NmuCI	GTSAC	2 cut(s)	264, 595
NsiI	ATGCAT	1 cut(s)	282
PflMI	CCANNNNNTGG	1 cut(s)	590
PfoI	TCCNGGA	1 cut(s)	439
PkrI	GCNGC	5 cut(s)	43, 127, 288, 331, 334
PleI	GAGTC	3 cut(s)	246, 501, 613
PpsI	GAGTC	3 cut(s)	246, 501, 613
PpuMI	RGGWCCY	1 cut(s)	531
Psp1406I	AACGTT	1 cut(s)	423
Psp5II	RGGWCCY	1 cut(s)	531
Psp6I	CCWGG	2 cut(s)	361, 439
PspGI	CCWGG	2 cut(s)	361, 439
PspN4I	GGNNCC	1 cut(s)	532
PspPI	GGNCC	4 cut(s)	17, 113, 531, 571
PspPPI	RGGWCCY	1 cut(s)	531
PstI	CTGCAG	1 cut(s)	334
PvuII	CAGCTG	2 cut(s)	50, 101
SaqAI	TTAA	5 cut(s)	171, 188, 579, 588, 689
SatI	GCNGC	5 cut(s)	42, 126, 287, 330, 333
Sau3AI	GATC	4 cut(s)	32, 163, 349, 472
Sau96I	GGNCC	4 cut(s)	17, 113, 531, 571
SchI	GAGTC	3 cut(s)	247, 502, 613
ScrFI	CCNGG	2 cut(s)	363, 441
SfaNI	GCATC	7 cut(s)	28, 53, 101, 166, 289, 441, 560
SfcI	CTRYAG	3 cut(s)	330, 456, 476
SinI	GGWCC	3 cut(s)	17, 113, 531
Sse9I	AATT	3 cut(s)	156, 397, 695
SspMI	CTAG	2 cut(s)	293, 555
StyD4I	CCNGG	2 cut(s)	361, 439
StyI	CCWWGG	2 cut(s)	409, 507
TaaI	ACNGT	1 cut(s)	566
TaiI	ACGT	2 cut(s)	222, 426
TaqI	TCGA	2 cut(s)	95, 254
TasI	AATT	3 cut(s)	156, 397, 695
Tru1I	TTAA	5 cut(s)	171, 188, 579, 588, 689
Tru9I	TTAA	5 cut(s)	171, 188, 579, 588, 689
TscAI	CASTG	2 cut(s)	15, 531
TseFI	GTSAC	2 cut(s)	264, 595
TseI	GCWGC	5 cut(s)	41, 125, 286, 329, 332
Tsp45I	GTSAC	2 cut(s)	264, 595
TspDTI	ATGAA	1 cut(s)	138
TspGWI	ACGGA	2 cut(s)	405, 531
TspRI	CASTG	2 cut(s)	15, 531
Van91I	CCANNNNNTGG	1 cut(s)	590
VpaK11BI	GGWCC	3 cut(s)	17, 113, 531
XagI	CCTNNNNNAGG	1 cut(s)	408
XspI	CTAG	2 cut(s)	293, 555
Zsp2I	ATGCAT	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.