pycom11g22120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0007332
Physical Location & Seq
Forward (+)
25125599 .. 25130447
4849 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 972 bp
ATGGTGGGGCGTTTGGCTGTGGACATTGGCCTACATTATCCAATTCCAACCCAAAAATCACCTCTCGAAATTACAAAGCCAAAAGTCCCTCCGTCCCTCCGTCCCTCCCCTCATCCAACCATGTCAGGCAAAGACCGTATGCTGAAGAGCCTCAAGAAGTTCGCTGACTTTCATTACAAAATCTTCACGGATAAATATGGCCAGCAGCTCACTGACATTTTCGAGTTCCCTATCAAGCTTGTCCTTTCTCCTTTCACTCTTGCTTTCGACATTGCCGGCTCTGCTCAACGTGGGTTTGGCGTTCCCGAGTTGGTGTCCAAGCTATCTTACATGTCAATCTTTGCAGTTGCTACTTTAGGAACTTATGACATAGCATTAGAGATGGGAAAGAAGGTGATATGTCAAAGGAACTGTGGAACCTGCAATGGTTGGCAGGCATTGCGGTGTACCATGTGCAGAGGATCAGGGAGGGTGCAATACCAAGTGAAGAATTACACCTTGAGAAGTGGAGAGAAGGCAACAGCTCAATGTGTTGCAGATGCCATTGCTGATAATCGGGCTGAGTTGGTTCATCTTCCATCCGCCATAAATCTTGATGCACCATTGCCATCTAAAGAGTGCCCAACCTGTGATGGCACGGGTGTGATGGGCTGTCCTGAGTGCAAGGACAAATTACAAGTCAGAATCTCTGCAGATGATATCATGGAGCCTCCATGGAAGGCCTACAATGTTCTGAGGAAGATGGACTACCCCTATGAGCATATAGTTCACAGCATGAAAGATCCCAGCATCGCTGCATTTTGGCTGTTTACCTTGCCTCAGGTTGTGGGGGGTTTCGACTTCGATGATGATATCAAGAAAAAAATTTGGTGGCAATACAAGGAATCTATGCGGTATGATCAACTTCGTGATGTGGTGGCCAAGCGAAAACCTGGCTGGGAGCAGTTGCAGGAAGCCTTGATCGATCCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

324

Amino Acids

36.42

Weight (kDa)

8.68

Isoelectric Point (pI)

42.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-AtTam37 PF25112 129 - 239 2.7e-62 AtTam37 zinc finger region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 428
AciI CCGC 3 cut(s) 442, 582, 892
AclWI GGATC 3 cut(s) 469, 776, 959
AcoI YGGCCR 2 cut(s) 199, 918
AcsI RAATTY 1 cut(s) 864
AcuI CTGAAG 1 cut(s) 164
AfaI GTAC 1 cut(s) 448
AflIII ACRYGT 1 cut(s) 330
AjnI CCWGG 1 cut(s) 931
AleI CACNNNNGTG 1 cut(s) 641
AluBI AGCT 4 cut(s) 208, 238, 322, 524
AluI AGCT 4 cut(s) 208, 238, 322, 524
AlwI GGATC 3 cut(s) 469, 776, 959
Ama87I CYCGRG 1 cut(s) 305
AoxI GGCC 4 cut(s) 28, 199, 720, 918
ApeKI GCWGC 2 cut(s) 205, 794
ApoI RAATTY 1 cut(s) 864
ArsI GACNNNNNNTTYG 2 cut(s) 663, 695
AsuHPI GGTGA 2 cut(s) 51, 406
AvaI CYCGRG 1 cut(s) 305
AxyI CCTNAGG 1 cut(s) 819
BaeGI GKGCMC 1 cut(s) 623
BalI TGGCCA 2 cut(s) 201, 920
BarI GAAGNNNNNNTAC 2 cut(s) 731, 763
BbvI GCAGC 2 cut(s) 217, 781
BccI CCATC 6 cut(s) 376, 586, 616, 626, 640, 736
BciT130I CCWGG 1 cut(s) 933
BclI TGATCA 1 cut(s) 898
BfmI CTRYAG 1 cut(s) 690
BfuAI ACCTGC 1 cut(s) 428
BisI GCNGC 2 cut(s) 206, 795
BlsI GCNGC 2 cut(s) 207, 796
Bme1390I CCNGG 1 cut(s) 933
BmeT110I CYCGRG 1 cut(s) 305
BmiI GGNNCC 2 cut(s) 418, 708
BmrFI CCNGG 1 cut(s) 933
BmsI GCATC 3 cut(s) 529, 586, 798
BpuEI CTTGAG 2 cut(s) 137, 520
Bsa29I ATCGAT 1 cut(s) 963
BsaJI CCNNGG 1 cut(s) 713
Bse118I RCCGGY 1 cut(s) 275
Bse21I CCTNAGG 1 cut(s) 819
Bse3DI GCAATG 5 cut(s) 270, 430, 437, 543, 602
BseBI CCWGG 1 cut(s) 933
BseCI ATCGAT 1 cut(s) 963
BseDI CCNNGG 1 cut(s) 713
BseGI GGATG 2 cut(s) 112, 578
BseMI GCAATG 5 cut(s) 270, 430, 437, 543, 602
BseMII CTCAG 4 cut(s) 552, 648, 725, 833
BseSI GKGCMC 1 cut(s) 623
BseXI GCAGC 2 cut(s) 217, 781
BseYI CCCAGC 2 cut(s) 785, 936
BsgI GTGCAG 1 cut(s) 475
BshFI GGCC 4 cut(s) 30, 201, 722, 920
BshVI ATCGAT 1 cut(s) 963
BsiHKCI CYCGRG 1 cut(s) 305
BsiSI CCGG 1 cut(s) 276
BslFI GGGAC 3 cut(s) 71, 79, 87
BsmFI GGGAC 3 cut(s) 71, 79, 87
BsnI GGCC 4 cut(s) 30, 201, 722, 920
BsoBI CYCGRG 1 cut(s) 305
Bsp1286I GDGCHC 1 cut(s) 623
Bsp143I GATC 5 cut(s) 461, 781, 898, 960, 964
Bsp19I CCATGG 1 cut(s) 713
BspACI CCGC 3 cut(s) 442, 582, 892
BspANI GGCC 4 cut(s) 30, 201, 722, 920
BspCNI CTCAG 4 cut(s) 553, 649, 726, 832
BspDI ATCGAT 1 cut(s) 963
BspLI GGNNCC 2 cut(s) 418, 708
BspMAI CTGCAG 1 cut(s) 694
BspMI ACCTGC 1 cut(s) 428
BspPI GGATC 3 cut(s) 469, 776, 959
BspQI GCTCTTC 1 cut(s) 140
BsrDI GCAATG 5 cut(s) 270, 430, 437, 543, 602
BsrFI RCCGGY 1 cut(s) 275
BssAI RCCGGY 1 cut(s) 275
BssECI CCNNGG 1 cut(s) 713
BssMI GATC 5 cut(s) 461, 781, 898, 960, 964
BssT1I CCWWGG 1 cut(s) 713
Bst2UI CCWGG 1 cut(s) 933
Bst4CI ACNGT 2 cut(s) 137, 413
Bst6I CTCTTC 1 cut(s) 140
BstAPI GCANNNNNTGC 1 cut(s) 439
BstC8I GCNNGC 3 cut(s) 203, 277, 435
BstDEI CTNAG 4 cut(s) 561, 657, 734, 819
BstDSI CCRYGG 1 cut(s) 713
BstF5I GGATG 2 cut(s) 112, 578
BstKTI GATC 5 cut(s) 464, 784, 901, 963, 967
BstMBI GATC 5 cut(s) 461, 781, 898, 960, 964
BstMWI GCNNNNNNNGC 2 cut(s) 281, 439
BstNI CCWGG 1 cut(s) 933
BstNSI RCATGY 1 cut(s) 334
BstSCI CCNGG 1 cut(s) 931
BstSFI CTRYAG 1 cut(s) 690
BstSLI GKGCMC 1 cut(s) 623
BstV1I GCAGC 2 cut(s) 217, 781
BstX2I RGATCY 1 cut(s) 781
BstYI RGATCY 1 cut(s) 781
Bsu15I ATCGAT 1 cut(s) 963
Bsu36I CCTNAGG 1 cut(s) 819
BsuRI GGCC 4 cut(s) 30, 201, 722, 920
BsuTUI ATCGAT 1 cut(s) 963
BtgI CCRYGG 1 cut(s) 713
BtgZI GCGATG 1 cut(s) 775
BtsCI GGATG 2 cut(s) 112, 578
BtsIMutI CAGTG 1 cut(s) 210
BveI ACCTGC 1 cut(s) 428
Cac8I GCNNGC 3 cut(s) 203, 277, 435
Cfr10I RCCGGY 1 cut(s) 275
ClaI ATCGAT 1 cut(s) 963
Csp6I GTAC 1 cut(s) 447
CviAII CATG 6 cut(s) 121, 331, 451, 703, 714, 775
CviQI GTAC 1 cut(s) 447
DdeI CTNAG 4 cut(s) 561, 657, 734, 819
DpnI GATC 5 cut(s) 463, 783, 900, 962, 966
DpnII GATC 5 cut(s) 461, 781, 898, 960, 964
EaeI YGGCCR 2 cut(s) 199, 918
Eam1104I CTCTTC 1 cut(s) 140
EarI CTCTTC 1 cut(s) 140
EciI GGCGGA 1 cut(s) 571
Eco130I CCWWGG 1 cut(s) 713
Eco147I AGGCCT 1 cut(s) 722
Eco32I GATATC 2 cut(s) 700, 853
Eco57I CTGAAG 1 cut(s) 164
Eco81I CCTNAGG 1 cut(s) 819
Eco88I CYCGRG 1 cut(s) 305
EcoRII CCWGG 1 cut(s) 931
EcoRV GATATC 2 cut(s) 700, 853
EcoT14I CCWWGG 1 cut(s) 713
ErhI CCWWGG 1 cut(s) 713
FaeI CATG 6 cut(s) 124, 334, 454, 706, 717, 778
FaqI GGGAC 3 cut(s) 71, 79, 87
FatI CATG 6 cut(s) 120, 330, 450, 702, 713, 774
FbaI TGATCA 1 cut(s) 898
Fnu4HI GCNGC 2 cut(s) 206, 795
FokI GGATG 2 cut(s) 99, 565
Fsp4HI GCNGC 2 cut(s) 206, 795
GluI GCNGC 2 cut(s) 206, 795
GsaI CCCAGC 2 cut(s) 789, 940
HaeIII GGCC 4 cut(s) 30, 201, 722, 920
HapII CCGG 1 cut(s) 276
Hin1II CATG 6 cut(s) 124, 334, 454, 706, 717, 778
HindIII AAGCTT 1 cut(s) 236
HinfI GANTC 2 cut(s) 684, 884
HpaII CCGG 1 cut(s) 276
HphI GGTGA 2 cut(s) 51, 406
Hpy166II GTNNAC 4 cut(s) 22, 447, 769, 810
Hpy188I TCNGA 2 cut(s) 683, 735
Hpy188III TCNNGA 7 cut(s) 65, 154, 305, 593, 656, 856, 908
Hpy8I GTNNAC 4 cut(s) 22, 447, 769, 810
HpyAV CCTTC 3 cut(s) 385, 508, 712
HpyCH4III ACNGT 2 cut(s) 137, 413
HpyCH4IV ACGT 1 cut(s) 289
HpyF10VI GCNNNNNNNGC 2 cut(s) 281, 439
HpyF3I CTNAG 4 cut(s) 561, 657, 734, 819
HpySE526I ACGT 1 cut(s) 289
Hsp92II CATG 6 cut(s) 124, 334, 454, 706, 717, 778
KroI GCCGGC 1 cut(s) 275
KroNI GCCGGC 1 cut(s) 277
Ksp22I TGATCA 1 cut(s) 898
Kzo9I GATC 5 cut(s) 461, 781, 898, 960, 964
LguI GCTCTTC 1 cut(s) 140
LmnI GCTCC 2 cut(s) 706, 940
Lsp1109I GCAGC 2 cut(s) 217, 781
LweI GCATC 3 cut(s) 529, 586, 798
MaeII ACGT 1 cut(s) 289
MalI GATC 5 cut(s) 463, 783, 900, 962, 966
MboI GATC 5 cut(s) 461, 781, 898, 960, 964
MboII GAAGA 5 cut(s) 157, 175, 499, 566, 751
MflI RGATCY 1 cut(s) 781
MhlI GDGCHC 1 cut(s) 623
MlsI TGGCCA 2 cut(s) 201, 920
MluCI AATT 5 cut(s) 42, 69, 490, 671, 864
MluNI TGGCCA 2 cut(s) 201, 920
MmeI TCCRAC 2 cut(s) 71, 140
Mox20I TGGCCA 2 cut(s) 201, 920
MroNI GCCGGC 1 cut(s) 275
MscI TGGCCA 2 cut(s) 201, 920
MslI CAYNNNNRTG 2 cut(s) 442, 641
Msp20I TGGCCA 2 cut(s) 201, 920
MspI CCGG 1 cut(s) 276
MspR9I CCNGG 1 cut(s) 933
MvaI CCWGG 1 cut(s) 933
MwoI GCNNNNNNNGC 2 cut(s) 281, 439
NaeI GCCGGC 1 cut(s) 277
NcoI CCATGG 1 cut(s) 713
NdeII GATC 5 cut(s) 461, 781, 898, 960, 964
NgoMIV GCCGGC 1 cut(s) 275
NlaIII CATG 6 cut(s) 124, 334, 454, 706, 717, 778
NlaIV GGNNCC 2 cut(s) 418, 708
NspI RCATGY 1 cut(s) 334
OliI CACNNNNGTG 1 cut(s) 641
PceI AGGCCT 1 cut(s) 722
PciI ACATGT 1 cut(s) 330
PciSI GCTCTTC 1 cut(s) 140
PdiI GCCGGC 1 cut(s) 277
PfeI GAWTC 2 cut(s) 684, 884
PkrI GCNGC 2 cut(s) 207, 796
PscI ACATGT 1 cut(s) 330
Psp6I CCWGG 1 cut(s) 931
PspFI CCCAGC 2 cut(s) 785, 936
PspGI CCWGG 1 cut(s) 931
PspN4I GGNNCC 2 cut(s) 418, 708
PstI CTGCAG 1 cut(s) 694
PsuI RGATCY 1 cut(s) 781
RsaI GTAC 1 cut(s) 448
RsaNI GTAC 1 cut(s) 447
RseI CAYNNNNRTG 2 cut(s) 442, 641
SapI GCTCTTC 1 cut(s) 140
SatI GCNGC 2 cut(s) 206, 795
Sau3AI GATC 5 cut(s) 461, 781, 898, 960, 964
ScrFI CCNGG 1 cut(s) 933
SduI GDGCHC 1 cut(s) 623
SfaNI GCATC 3 cut(s) 529, 586, 798
SfcI CTRYAG 1 cut(s) 690
SmiMI CAYNNNNRTG 2 cut(s) 442, 641
SmlI CTYRAG 2 cut(s) 152, 499
SmoI CTYRAG 2 cut(s) 152, 499
Sse9I AATT 5 cut(s) 42, 69, 490, 671, 864
SseBI AGGCCT 1 cut(s) 722
SsiI CCGC 3 cut(s) 442, 582, 892
StuI AGGCCT 1 cut(s) 722
StyD4I CCNGG 1 cut(s) 931
StyI CCWWGG 1 cut(s) 713
TaaI ACNGT 2 cut(s) 137, 413
TaiI ACGT 1 cut(s) 292
TaqI TCGA 6 cut(s) 66, 222, 267, 837, 843, 963
TasI AATT 5 cut(s) 42, 69, 490, 671, 864
TfiI GAWTC 2 cut(s) 684, 884
TscAI CASTG 1 cut(s) 217
TseI GCWGC 2 cut(s) 205, 794
TspDTI ATGAA 3 cut(s) 161, 560, 791
TspGWI ACGGA 4 cut(s) 81, 89, 203, 957
TspRI CASTG 1 cut(s) 217
XapI RAATTY 1 cut(s) 864
XceI RCATGY 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.