pycom11g22840

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0014693
Physical Location & Seq
Reverse (-)
25853961 .. 25855674
1714 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1014 bp
ATGGCTCATGAGGAAGAACAAACCCAAAACACTAGCAATGGAATTATTGGATTGGGAAGCAATAACATCATCAGTAGCAGATCTTCATCCAAAAAAACAAAGCAGAAAAAAGTGCCACAGAGAGGACTTGGTGTTGCACAGCTTGAGAAAATCAGGCTTGAAGAACAGCAGAAGAAAGCAGCTGCTGCTGCAATTTTGTCCACCACCCCACCATCTTCTCTCTCATCACCAACTAAATCTACTTCATCTTCATGTCCTAGTTCGGTTCCGATCAGGCATTTTTATCAGCCTCCCTCTTCAATCCCATTCCCATCACTGGATCTGCCTTCTCCAAACTCAATTTTCCAGCCGCCGTTGATTCCACCGGCCCACAGCGGCGTTGATGGTAGAAAGTTAATGATCAGCAGTCGCACTGTTCCATTTGGAAAGAGAAATAGTTACAAAAATAATAATACTAATGGTTGTGGGAATGGGAATCATGTTCCCAACTTGTGGAATCCGTGTGAGTTCAATGTTCTTGATCATCAAGAGAGTTCTAATCCTGGGTTGGATCCTGGATTGGCATTCAGGTCTAATTTGAATGTGCCTTTTGAGTCCAACAACAACAACCCCATTTGGGCTATCTCCAATTTTCCAACAAGAACACATCAATTTCATCAACAGCACCCTCCTCCACCGCTACCACCACCACCATCACCTCCCCCTCCTTCAATGGTGAATGTGTCAACAGCAACTTCAACATCATCTGTACTAAATTTTCAGATAGAGCCCCCTTCAAACCAAAGCTATTACAGCAACTATGCTCCTATGTGGCCGGATGAAGAAAAGATGGTTGGCATGAAGAGGCCCTATCCATTTTCTCTGGAGAATCCGTCTGTCCCCTCCATCAACTTCAAGTTCCCTACCTTTGTTGCTCCACCTATAAGAACAGATGAAGGAACTTCATGTGGGAACAGCTCCCCCTTCAATTTTGATCCAGCAATCAACCCAAATTTCAGGTCAATTTATCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NOZZLE

Protein Analysis

338

Amino Acids

36.85

Weight (kDa)

9.14

Isoelectric Point (pI)

68.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014693)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g18750 FvH4_3g18750 FvH4_3g18750
malus_domestica MD03G1238800.v1.1 MD11G1258600.v1.1
prunus_persica Prupe.4G171200_v2.0.a1
pyrus_communis pycom11g22840
rosa_chinensis RchiOBHm_Chr5g0031561
rosa_laevigata RLG00000033324
rosa_multiflora Rmu_sc0014784.1_g000002
rosa_roxburghii Rroxscaffold_1G00048740
rosa_rugosa Rorug05G0127000
rosa_samantha Rh5AG220200 Rh5BG219600 Rh5CG243000 Rh5DG224700
rosa_wichuraiana Rw5G020080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 492
AciI CCGC 3 cut(s) 350, 375, 677
AclWI GGATC 4 cut(s) 327, 545, 558, 968
AcoI YGGCCR 1 cut(s) 812
AcsI RAATTY 2 cut(s) 754, 991
AfaI GTAC 1 cut(s) 750
AfiI CCNNNNNNNGG 4 cut(s) 122, 316, 492, 616
AgsI TTSAA 9 cut(s) 161, 300, 511, 580, 711, 738, 777, 895, 967
AjnI CCWGG 2 cut(s) 541, 553
AjuI GAANNNNNNNTTGG 2 cut(s) 816, 848
AluBI AGCT 4 cut(s) 142, 182, 786, 957
AluI AGCT 4 cut(s) 142, 182, 786, 957
AlwI GGATC 4 cut(s) 327, 545, 558, 968
AlwNI CAGNNNCTG 1 cut(s) 185
AoxI GGCC 3 cut(s) 366, 812, 845
ApeKI GCWGC 4 cut(s) 179, 182, 185, 188
ApoI RAATTY 2 cut(s) 754, 991
ArsI GACNNNNNNTTYG 1 cut(s) 983
AspS9I GGNCC 2 cut(s) 367, 846
AsuHPI GGTGA 3 cut(s) 219, 687, 727
BamHI GGATCC 1 cut(s) 550
BanII GRGCYC 1 cut(s) 771
BarI GAAGNNNNNNTAC 2 cut(s) 67, 99
BbvI GCAGC 4 cut(s) 169, 172, 175, 191
BccI CCATC 6 cut(s) 220, 319, 377, 700, 823, 893
BceAI ACGGC 1 cut(s) 337
BciT130I CCWGG 2 cut(s) 543, 555
BclI TGATCA 2 cut(s) 399, 520
BfaI CTAG 2 cut(s) 33, 258
BglII AGATCT 1 cut(s) 80
BisI GCNGC 6 cut(s) 180, 183, 186, 189, 350, 376
BlsI GCNGC 6 cut(s) 181, 184, 187, 190, 351, 377
Bme1390I CCNGG 2 cut(s) 543, 555
BmgT120I GGNCC 2 cut(s) 367, 846
BmiI GGNNCC 2 cut(s) 267, 552
BmrFI CCNGG 2 cut(s) 543, 555
BpmI CTGGAG 1 cut(s) 884
BpuEI CTTGAG 1 cut(s) 164
BsaBI GATNNNNATC 1 cut(s) 85
BsaJI CCNNGG 1 cut(s) 542
BsaXI ACNNNNNCTCC 2 cut(s) 857, 887
Bsc4I CCNNNNNNNGG 4 cut(s) 122, 316, 492, 616
Bse118I RCCGGY 1 cut(s) 364
Bse1I ACTGG 1 cut(s) 321
Bse3DI GCAATG 1 cut(s) 43
Bse8I GATNNNNATC 1 cut(s) 85
BseBI CCWGG 2 cut(s) 543, 555
BseDI CCNNGG 1 cut(s) 542
BseGI GGATG 2 cut(s) 86, 823
BseJI GATNNNNATC 1 cut(s) 85
BseLI CCNNNNNNNGG 4 cut(s) 122, 316, 492, 616
BseMI GCAATG 1 cut(s) 43
BseNI ACTGG 1 cut(s) 321
BseRI GAGGAG 1 cut(s) 660
BseXI GCAGC 4 cut(s) 169, 172, 175, 191
BshFI GGCC 3 cut(s) 368, 814, 847
BsiSI CCGG 2 cut(s) 365, 815
BslFI GGGAC 1 cut(s) 863
BslI CCNNNNNNNGG 4 cut(s) 122, 316, 492, 616
BsmFI GGGAC 1 cut(s) 863
BsmI GAATGC 1 cut(s) 563
BsnI GGCC 3 cut(s) 368, 814, 847
Bsp1286I GDGCHC 1 cut(s) 771
Bsp143I GATC 7 cut(s) 80, 270, 319, 399, 520, 550, 973
BspACI CCGC 3 cut(s) 350, 375, 677
BspANI GGCC 3 cut(s) 368, 814, 847
BspHI TCATGA 1 cut(s) 7
BspLI GGNNCC 2 cut(s) 267, 552
BspPI GGATC 4 cut(s) 327, 545, 558, 968
BsrDI GCAATG 1 cut(s) 43
BsrFI RCCGGY 1 cut(s) 364
BsrI ACTGG 1 cut(s) 321
BssAI RCCGGY 1 cut(s) 364
BssECI CCNNGG 1 cut(s) 542
BssMI GATC 7 cut(s) 80, 270, 319, 399, 520, 550, 973
Bst2UI CCWGG 2 cut(s) 543, 555
Bst4CI ACNGT 1 cut(s) 415
Bst6I CTCTTC 2 cut(s) 301, 836
BstAPI GCANNNNNTGC 1 cut(s) 185
BstF5I GGATG 2 cut(s) 86, 823
BstKTI GATC 7 cut(s) 83, 273, 322, 402, 523, 553, 976
BstMBI GATC 7 cut(s) 80, 270, 319, 399, 520, 550, 973
BstMWI GCNNNNNNNGC 3 cut(s) 185, 188, 792
BstNI CCWGG 2 cut(s) 543, 555
BstSCI CCNGG 2 cut(s) 541, 553
BstV1I GCAGC 4 cut(s) 169, 172, 175, 191
BstX2I RGATCY 3 cut(s) 80, 319, 550
BstYI RGATCY 3 cut(s) 80, 319, 550
BsuRI GGCC 3 cut(s) 368, 814, 847
BtsCI GGATG 2 cut(s) 86, 823
BtsIMutI CAGTG 2 cut(s) 314, 411
CaiI CAGNNNCTG 1 cut(s) 185
CciI TCATGA 1 cut(s) 7
Cfr10I RCCGGY 1 cut(s) 364
Cfr13I GGNCC 2 cut(s) 367, 846
Csp6I GTAC 1 cut(s) 749
CviAII CATG 5 cut(s) 8, 252, 479, 838, 945
CviQI GTAC 1 cut(s) 749
DpnI GATC 7 cut(s) 82, 272, 321, 401, 522, 552, 975
DpnII GATC 7 cut(s) 80, 270, 319, 399, 520, 550, 973
EaeI YGGCCR 1 cut(s) 812
Eam1104I CTCTTC 2 cut(s) 301, 836
EarI CTCTTC 2 cut(s) 301, 836
Eco24I GRGCYC 1 cut(s) 771
EcoO109I RGGNCCY 1 cut(s) 846
EcoRII CCWGG 2 cut(s) 541, 553
EcoT38I GRGCYC 1 cut(s) 771
FaeI CATG 5 cut(s) 11, 255, 482, 841, 948
FaiI YATR 8 cut(s) 9, 253, 480, 801, 809, 839, 923, 946
FaqI GGGAC 1 cut(s) 863
FatI CATG 5 cut(s) 7, 251, 478, 837, 944
FbaI TGATCA 2 cut(s) 399, 520
Fnu4HI GCNGC 6 cut(s) 180, 183, 186, 189, 350, 376
FokI GGATG 2 cut(s) 73, 830
FriOI GRGCYC 1 cut(s) 771
Fsp4HI GCNGC 6 cut(s) 180, 183, 186, 189, 350, 376
FspBI CTAG 2 cut(s) 33, 258
GluI GCNGC 6 cut(s) 180, 183, 186, 189, 350, 376
GsuI CTGGAG 1 cut(s) 884
HaeIII GGCC 3 cut(s) 368, 814, 847
HapII CCGG 2 cut(s) 365, 815
Hin1II CATG 5 cut(s) 11, 255, 482, 841, 948
HincII GTYRAC 1 cut(s) 726
HindII GTYRAC 1 cut(s) 726
HinfI GANTC 5 cut(s) 358, 475, 496, 593, 868
HpaII CCGG 2 cut(s) 365, 815
HphI GGTGA 3 cut(s) 219, 687, 727
Hpy166II GTNNAC 2 cut(s) 201, 726
Hpy188I TCNGA 2 cut(s) 270, 762
Hpy188III TCNNGA 4 cut(s) 8, 518, 527, 863
Hpy8I GTNNAC 2 cut(s) 201, 726
HpyAV CCTTC 5 cut(s) 336, 717, 783, 929, 973
HpyCH4III ACNGT 1 cut(s) 415
HpyCH4V TGCA 2 cut(s) 137, 191
HpyF10VI GCNNNNNNNGC 3 cut(s) 185, 188, 792
Hsp92II CATG 5 cut(s) 11, 255, 482, 841, 948
Ksp22I TGATCA 2 cut(s) 399, 520
Kzo9I GATC 7 cut(s) 80, 270, 319, 399, 520, 550, 973
LmnI GCTCC 3 cut(s) 808, 919, 962
Lsp1109I GCAGC 4 cut(s) 169, 172, 175, 191
MaeI CTAG 2 cut(s) 33, 258
MaeIII GTNAC 1 cut(s) 437
MalI GATC 7 cut(s) 82, 272, 321, 401, 522, 552, 975
MboI GATC 7 cut(s) 80, 270, 319, 399, 520, 550, 973
MboII GAAGA 9 cut(s) 26, 75, 173, 184, 207, 240, 288, 833, 853
MflI RGATCY 3 cut(s) 80, 319, 550
MhlI GDGCHC 1 cut(s) 771
MlyI GAGTC 1 cut(s) 602
MmeI TCCRAC 3 cut(s) 528, 621, 659
MseI TTAA 1 cut(s) 395
MslI CAYNNNNRTG 1 cut(s) 250
MspA1I CMGCKG 2 cut(s) 182, 375
MspI CCGG 2 cut(s) 365, 815
MspR9I CCNGG 2 cut(s) 543, 555
Mva1269I GAATGC 1 cut(s) 563
MvaI CCWGG 2 cut(s) 543, 555
MwoI GCNNNNNNNGC 3 cut(s) 185, 188, 792
NdeII GATC 7 cut(s) 80, 270, 319, 399, 520, 550, 973
NlaIII CATG 5 cut(s) 11, 255, 482, 841, 948
NlaIV GGNNCC 2 cut(s) 267, 552
PagI TCATGA 1 cut(s) 7
PctI GAATGC 1 cut(s) 563
PfeI GAWTC 4 cut(s) 358, 475, 496, 868
PflMI CCANNNNNTGG 1 cut(s) 492
PfoI TCCNGGA 1 cut(s) 553
PkrI GCNGC 6 cut(s) 181, 184, 187, 190, 351, 377
PleI GAGTC 1 cut(s) 601
PpsI GAGTC 1 cut(s) 601
Psp6I CCWGG 2 cut(s) 541, 553
PspGI CCWGG 2 cut(s) 541, 553
PspN4I GGNNCC 2 cut(s) 267, 552
PspPI GGNCC 2 cut(s) 367, 846
PstNI CAGNNNCTG 1 cut(s) 185
PsuI RGATCY 3 cut(s) 80, 319, 550
PvuII CAGCTG 1 cut(s) 182
RsaI GTAC 1 cut(s) 750
RsaNI GTAC 1 cut(s) 749
RseI CAYNNNNRTG 1 cut(s) 250
SaqAI TTAA 1 cut(s) 395
SatI GCNGC 6 cut(s) 180, 183, 186, 189, 350, 376
Sau3AI GATC 7 cut(s) 80, 270, 319, 399, 520, 550, 973
Sau96I GGNCC 2 cut(s) 367, 846
SchI GAGTC 1 cut(s) 602
ScrFI CCNGG 2 cut(s) 543, 555
SduI GDGCHC 1 cut(s) 771
SetI ASST 9 cut(s) 144, 184, 572, 700, 788, 908, 922, 959, 1001
SmiMI CAYNNNNRTG 1 cut(s) 250
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
SsiI CCGC 3 cut(s) 350, 375, 677
SspMI CTAG 2 cut(s) 33, 258
StyD4I CCNGG 2 cut(s) 541, 553
TaaI ACNGT 1 cut(s) 415
TatI WGTACW 1 cut(s) 748
TauI GCSGC 2 cut(s) 352, 378
TfiI GAWTC 4 cut(s) 358, 475, 496, 868
Tru1I TTAA 1 cut(s) 395
Tru9I TTAA 1 cut(s) 395
TscAI CASTG 2 cut(s) 321, 418
TseI GCWGC 4 cut(s) 179, 182, 185, 188
TspDTI ATGAA 8 cut(s) 75, 234, 240, 644, 834, 854, 933, 948
TspGWI ACGGA 2 cut(s) 489, 861
TspRI CASTG 2 cut(s) 321, 418
Van91I CCANNNNNTGG 1 cut(s) 492
XapI RAATTY 2 cut(s) 754, 991
XspI CTAG 2 cut(s) 33, 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.