Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0003192

Physical Location & Seq

Genomic Coordinates Reverse (-)

25968775 .. 25970040

Gene Structure 1266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGGACCAAGTTTTGGCAACTGAGAAGTCTTTAGTTGCAATTGAAAAGCAATCTCCTACAGAGCCCAATGTAATGAATCCAGTGACAAACCAGCCCAGTCTTGTCTCTAGTAAATATCACCTTGCCGATCAACCGAGTTCTCCAACTTTAATAGATACTGTCAAGGTGCCAGAGTCTGACTCATCTGTGGGGAAGGTTGATGAAGTTTTGACCAGTGAAGGTTCTGTAGATGTGATGGAAAATCAATTGCCTACAAAGCTAAATGTGATGGATCCTGTAACAAACCAGCTGAGTGTTGTCTCTGGTAAATATTACCTTCCAGATCAACCTAGTTCTCCAATTTCAGTGGACACTCTTAAGGTGTCAGAGTCCAACTTATCTGTGGGAGACATTGATGGCGATTCAGATATTGAAAATTCTTTAGATTCACCTGAAAAGCAATCACCTATGGAGCCCAATTTAATGGATCATGTGACCAAACAGCTGAGTCTTGTTGGCAGTAAATATTACCTTGCAGATCAACCTAGTTCTTCTGCAGTGGATACTCTCGAAGTGTTAGAGTCCGAGTTATCTGTGGAAAATATTGATGAAGTTTTGGCAAATGAAAATTCTTTAGATGCAACTGAAAATCTAACACGTACAGACCCCAGTGTAATCGATCCATGCCAGCCGAGTCTTGTCTCCAGTAAAGATAACCTTGCAGGTCAACTTAGTTCTCCTGCTTCCATGAATACTCTTGAGGTAGTGGAGTCTGACTTGTCTGTTCCAGAGATTGATGACATTTTTACCAATGAAGACTCAGCTGCAAACAATGAAGAAACTGCCGTAAAAGTGTCTGCATCTATATTAGAGGAGTTAACTTCTCCTTTTGTGGCAGAACACTCGACAGCATCCCCACACGGGGTATTTTCTCATAGCAATCATGAAAATAGATGTGCTGATTTGCCTGAGGTTGCACCTGTAACCCCTGCATATGGATTGGAGTTTGAGTCCGAGCAGAAGTCGACTGTTTGTAATGAGTCTTCAGATGAAACTGAGTATGTATCTGGTGCTTCAAGTACTACTTCTGAAATTGCCTCTTCAGTTGTATCTGGGGAAAATGCTATAGAGAATATGGAACTTGCATCCTTCAGCAGCTCCAATGCAAAGGATTCTAATGGGCTCCCATCATCTGCTTCACCTTCAACCGTGTCTGGTGAGAATAAGGACCTCGGTATGGGACTTTCTTCTTTCAGCAGTGTCATATCACCCGAATCAGTAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

422

Amino Acids

44.49

Weight (kDa)

4.05

Isoelectric Point (pI)

54.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17780 AT1G17780 AT1G17780 AT1G17780 AT1G17780 AT1G17780 AT1G73130 AT1G73130 AT1G73130 AT1G73130 AT1G73130 AT2G16575
fragaria_vesca	FvH4_3g18640 FvH4_3g18640 FvH4_3g18640 FvH4_3g18640 FvH4_3g25880
malus_domestica	MD03G1240400.v1.1 MD11G1259700.v1.1
prunus_persica	Prupe.4G170200_v2.0.a1 Prupe.4G170200_v2.0.a1
pyrus_communis	pycom03g18560 pycom11g22940
rosa_chinensis	RchiOBHm_Chr5g0031461
rosa_laevigata	RLG00000002875 RLG00000029120 RLG00000033309
rosa_multiflora	Rmu_sc0000404.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431450 Rroxscaffold_1G00048870 Rroxscaffold_6G00411210
rosa_rugosa	Rorug05G0126000
rosa_samantha	Rh5AG218800 Rh5BG218100 Rh5CG241800 Rh5DG223400
rosa_wichuraiana	Rw5G019960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	692
AccB1I	GGYRCC	1 cut(s)	166
AccB7I	CCANNNNNTGG	1 cut(s)	13
AccI	GTMKAC	1 cut(s)	1004
AclWI	GGATC	4 cut(s)	266, 279, 474, 653
AcsI	RAATTY	2 cut(s)	415, 607
AcuI	CTGAAG	3 cut(s)	1008, 1065, 1114
AfaI	GTAC	2 cut(s)	640, 1060
AfiI	CCNNNNNNNGG	5 cut(s)	13, 900, 901, 974, 1216
AflII	CTTAAG	1 cut(s)	356
AflIII	ACRYGT	1 cut(s)	635
AgsI	TTSAA	4 cut(s)	44, 413, 1056, 1185
AluBI	AGCT	5 cut(s)	259, 289, 484, 803, 1137
AluI	AGCT	5 cut(s)	259, 289, 484, 803, 1137
Alw26I	GTCTC	4 cut(s)	109, 304, 381, 685
AlwI	GGATC	4 cut(s)	266, 279, 474, 653
AlwNI	CAGNNNCTG	1 cut(s)	176
ApeKI	GCWGC	2 cut(s)	803, 1134
ApoI	RAATTY	2 cut(s)	415, 607
AspS9I	GGNCC	2 cut(s)	4, 1207
AsuHPI	GGTGA	6 cut(s)	110, 420, 435, 1170, 1208, 1239
AvaII	GGWCC	2 cut(s)	4, 1207
AxyI	CCTNAGG	1 cut(s)	948
BamHI	GGATCC	1 cut(s)	271
BanI	GGYRCC	1 cut(s)	166
BanII	GRGCYC	3 cut(s)	66, 456, 1164
BarI	GAAGNNNNNNTAC	2 cut(s)	1006, 1038
BbsI	GAAGAC	2 cut(s)	801, 1014
BbvI	GCAGC	2 cut(s)	790, 1146
BccI	CCATC	4 cut(s)	229, 262, 389, 1174
BceAI	ACGGC	1 cut(s)	809
BcgI	CGANNNNNNTGC	2 cut(s)	864, 898
BciVI	GTATCC	1 cut(s)	535
BcoDI	GTCTC	4 cut(s)	109, 304, 381, 685
BfaI	CTAG	3 cut(s)	108, 330, 525
BfmI	CTRYAG	4 cut(s)	57, 225, 534, 1104
BfrI	CTTAAG	1 cut(s)	356
BfuAI	ACCTGC	1 cut(s)	692
BfuI	GTATCC	1 cut(s)	535
BisI	GCNGC	2 cut(s)	804, 1135
BlsI	GCNGC	2 cut(s)	805, 1136
BmcAI	AGTACT	1 cut(s)	1060
Bme18I	GGWCC	2 cut(s)	4, 1207
BmgT120I	GGNCC	2 cut(s)	4, 1207
BmiI	GGNNCC	4 cut(s)	168, 273, 453, 1163
BmrI	ACTGGG	2 cut(s)	90, 642
BmsI	GCATC	4 cut(s)	607, 848, 899, 1133
BmuI	ACTGGG	2 cut(s)	90, 642
BpiI	GAAGAC	2 cut(s)	801, 1014
BplI	GAGNNNNNCTC	2 cut(s)	164, 196
BpmI	CTGGAG	1 cut(s)	667
BpuEI	CTTGAG	1 cut(s)	758
Bsa29I	ATCGAT	1 cut(s)	657
BsaAI	YACGTR	1 cut(s)	638
BsaJI	CCNNGG	1 cut(s)	1210
BsaXI	ACNNNNNCTCC	2 cut(s)	974, 1004
Bsc4I	CCNNNNNNNGG	5 cut(s)	13, 900, 901, 974, 1216
Bse1I	ACTGG	5 cut(s)	80, 96, 213, 648, 684
Bse21I	CCTNAGG	1 cut(s)	948
BseCI	ATCGAT	1 cut(s)	657
BseDI	CCNNGG	1 cut(s)	1210
BseGI	GGATG	2 cut(s)	890, 1124
BseLI	CCNNNNNNNGG	5 cut(s)	13, 900, 901, 974, 1216
BseMII	CTCAG	6 cut(s)	12, 281, 476, 813, 939, 1026
BseNI	ACTGG	5 cut(s)	80, 96, 213, 648, 684
BseRI	GAGGAG	1 cut(s)	866
BseXI	GCAGC	2 cut(s)	790, 1146
BshNI	GGYRCC	1 cut(s)	166
BshVI	ATCGAT	1 cut(s)	657
BslFI	GGGAC	1 cut(s)	1233
BslI	CCNNNNNNNGG	5 cut(s)	13, 900, 901, 974, 1216
BsmAI	GTCTC	4 cut(s)	109, 304, 381, 685
BsmFI	GGGAC	1 cut(s)	1233
Bsp1286I	GDGCHC	3 cut(s)	66, 456, 1164
Bsp143I	GATC	6 cut(s)	127, 271, 322, 466, 517, 658
BspCNI	CTCAG	6 cut(s)	13, 282, 477, 812, 940, 1027
BspDI	ATCGAT	1 cut(s)	657
BspHI	TCATGA	1 cut(s)	922
BspLI	GGNNCC	4 cut(s)	168, 273, 453, 1163
BspMAI	CTGCAG	1 cut(s)	538
BspMI	ACCTGC	1 cut(s)	692
BspPI	GGATC	4 cut(s)	266, 279, 474, 653
BspT107I	GGYRCC	1 cut(s)	166
BspTI	CTTAAG	1 cut(s)	356
BsrI	ACTGG	5 cut(s)	80, 96, 213, 648, 684
BssECI	CCNNGG	1 cut(s)	1210
BssMI	GATC	6 cut(s)	127, 271, 322, 466, 517, 658
Bst4CI	ACNGT	3 cut(s)	160, 1009, 1189
Bst6I	CTCTTC	1 cut(s)	1084
BstAFI	CTTAAG	1 cut(s)	356
BstBAI	YACGTR	1 cut(s)	638
BstC8I	GCNNGC	1 cut(s)	668
BstDEI	CTNAG	7 cut(s)	21, 290, 485, 710, 799, 948, 1035
BstF5I	GGATG	2 cut(s)	890, 1124
BstKTI	GATC	6 cut(s)	130, 274, 325, 469, 520, 661
BstMAI	GTCTC	4 cut(s)	109, 304, 381, 685
BstMBI	GATC	6 cut(s)	127, 271, 322, 466, 517, 658
BstMWI	GCNNNNNNNGC	1 cut(s)	256
BstSFI	CTRYAG	4 cut(s)	57, 225, 534, 1104
BstV1I	GCAGC	2 cut(s)	790, 1146
BstV2I	GAAGAC	2 cut(s)	801, 1014
BstX2I	RGATCY	1 cut(s)	271
BstXI	CCANNNNNNTGG	1 cut(s)	463
BstYI	RGATCY	1 cut(s)	271
Bsu15I	ATCGAT	1 cut(s)	657
Bsu36I	CCTNAGG	1 cut(s)	948
BsuI	GTATCC	1 cut(s)	535
BsuTUI	ATCGAT	1 cut(s)	657
BtsCI	GGATG	2 cut(s)	890, 1124
BtsI	GCAGTG	2 cut(s)	543, 1243
BtsIMutI	CAGTG	6 cut(s)	87, 220, 351, 543, 655, 1243
BveI	ACCTGC	1 cut(s)	692
Cac8I	GCNNGC	1 cut(s)	668
CaiI	CAGNNNCTG	1 cut(s)	176
CciI	TCATGA	1 cut(s)	922
Cfr13I	GGNCC	2 cut(s)	4, 1207
ClaI	ATCGAT	1 cut(s)	657
Csp6I	GTAC	2 cut(s)	639, 1059
CspCI	CAANNNNNGTGG	2 cut(s)	327, 362
CviAII	CATG	4 cut(s)	470, 663, 727, 923
CviQI	GTAC	2 cut(s)	639, 1059
DdeI	CTNAG	7 cut(s)	21, 290, 485, 710, 799, 948, 1035
DpnI	GATC	6 cut(s)	129, 273, 324, 468, 519, 660
DpnII	GATC	6 cut(s)	127, 271, 322, 466, 517, 658
Eam1104I	CTCTTC	1 cut(s)	1084
EarI	CTCTTC	1 cut(s)	1084
Eco24I	GRGCYC	3 cut(s)	66, 456, 1164
Eco47I	GGWCC	2 cut(s)	4, 1207
Eco57I	CTGAAG	3 cut(s)	1008, 1065, 1114
Eco81I	CCTNAGG	1 cut(s)	948
EcoO109I	RGGNCCY	1 cut(s)	1207
EcoT38I	GRGCYC	3 cut(s)	66, 456, 1164
FaeI	CATG	4 cut(s)	473, 666, 730, 926
FalI	AAGNNNNNCTT	4 cut(s)	681, 713, 1048, 1080
FaqI	GGGAC	1 cut(s)	1233
FatI	CATG	4 cut(s)	469, 662, 726, 922
FauNDI	CATATG	1 cut(s)	973
FblI	GTMKAC	1 cut(s)	1004
Fnu4HI	GCNGC	2 cut(s)	804, 1135
FokI	GGATG	2 cut(s)	877, 1111
FriOI	GRGCYC	3 cut(s)	66, 456, 1164
Fsp4HI	GCNGC	2 cut(s)	804, 1135
FspBI	CTAG	3 cut(s)	108, 330, 525
GluI	GCNGC	2 cut(s)	804, 1135
GsuI	CTGGAG	1 cut(s)	667
Hin1II	CATG	4 cut(s)	473, 666, 730, 926
HincII	GTYRAC	3 cut(s)	707, 858, 1005
HindII	GTYRAC	3 cut(s)	707, 858, 1005
HpaI	GTTAAC	1 cut(s)	858
HphI	GGTGA	6 cut(s)	110, 420, 435, 1170, 1208, 1239
Hpy166II	GTNNAC	4 cut(s)	349, 707, 858, 1005
Hpy188I	TCNGA	8 cut(s)	178, 367, 406, 565, 754, 994, 1027, 1069
Hpy188III	TCNNGA	5 cut(s)	320, 548, 737, 767, 923
Hpy8I	GTNNAC	4 cut(s)	349, 707, 858, 1005
HpyAV	CCTTC	5 cut(s)	187, 212, 326, 1138, 1191
HpyCH4III	ACNGT	3 cut(s)	160, 1009, 1189
HpyCH4IV	ACGT	1 cut(s)	637
HpyF10VI	GCNNNNNNNGC	1 cut(s)	256
HpyF3I	CTNAG	7 cut(s)	21, 290, 485, 710, 799, 948, 1035
HpySE526I	ACGT	1 cut(s)	637
Hsp92II	CATG	4 cut(s)	473, 666, 730, 926
KspAI	GTTAAC	1 cut(s)	858
Kzo9I	GATC	6 cut(s)	127, 271, 322, 466, 517, 658
LmnI	GCTCC	3 cut(s)	451, 1142, 1167
Lsp1109I	GCAGC	2 cut(s)	790, 1146
LweI	GCATC	4 cut(s)	607, 848, 899, 1133
MaeI	CTAG	3 cut(s)	108, 330, 525
MaeII	ACGT	1 cut(s)	637
MaeIII	GTNAC	4 cut(s)	82, 277, 472, 961
MalI	GATC	6 cut(s)	129, 273, 324, 468, 519, 660
MboI	GATC	6 cut(s)	127, 271, 322, 466, 517, 658
MboII	GAAGA	6 cut(s)	522, 806, 827, 1014, 1071, 1218
MfeI	CAATTG	2 cut(s)	39, 245
MflI	RGATCY	1 cut(s)	271
MhlI	GDGCHC	3 cut(s)	66, 456, 1164
MluCI	AATT	7 cut(s)	39, 245, 339, 415, 457, 607, 1071
MmeI	TCCRAC	2 cut(s)	167, 396
MnlI	CCTC	5 cut(s)	733, 844, 943, 1087, 1220
MseI	TTAA	4 cut(s)	149, 357, 461, 857
MspA1I	CMGCKG	3 cut(s)	289, 484, 803
MspCI	CTTAAG	1 cut(s)	356
MunI	CAATTG	2 cut(s)	39, 245
MwoI	GCNNNNNNNGC	1 cut(s)	256
NdeI	CATATG	1 cut(s)	973
NdeII	GATC	6 cut(s)	127, 271, 322, 466, 517, 658
NlaIII	CATG	4 cut(s)	473, 666, 730, 926
NlaIV	GGNNCC	4 cut(s)	168, 273, 453, 1163
NmeAIII	GCCGAG	1 cut(s)	696
NmuCI	GTSAC	2 cut(s)	82, 472
PagI	TCATGA	1 cut(s)	922
PfeI	GAWTC	5 cut(s)	76, 401, 425, 1151, 1253
PflMI	CCANNNNNTGG	1 cut(s)	13
PkrI	GCNGC	2 cut(s)	805, 1136
Ppu21I	YACGTR	1 cut(s)	638
PpuMI	RGGWCCY	1 cut(s)	1207
Psp5II	RGGWCCY	1 cut(s)	1207
PspN4I	GGNNCC	4 cut(s)	168, 273, 453, 1163
PspPI	GGNCC	2 cut(s)	4, 1207
PspPPI	RGGWCCY	1 cut(s)	1207
PstI	CTGCAG	1 cut(s)	538
PstNI	CAGNNNCTG	1 cut(s)	176
PsuI	RGATCY	1 cut(s)	271
PvuII	CAGCTG	3 cut(s)	289, 484, 803
RsaI	GTAC	2 cut(s)	640, 1060
RsaNI	GTAC	2 cut(s)	639, 1059
SalI	GTCGAC	1 cut(s)	1003
SaqAI	TTAA	4 cut(s)	149, 357, 461, 857
SatI	GCNGC	2 cut(s)	804, 1135
Sau3AI	GATC	6 cut(s)	127, 271, 322, 466, 517, 658
Sau96I	GGNCC	2 cut(s)	4, 1207
ScaI	AGTACT	1 cut(s)	1060
SduI	GDGCHC	3 cut(s)	66, 456, 1164
SfaNI	GCATC	4 cut(s)	607, 848, 899, 1133
SfcI	CTRYAG	4 cut(s)	57, 225, 534, 1104
SinI	GGWCC	2 cut(s)	4, 1207
SmlI	CTYRAG	2 cut(s)	356, 737
SmoI	CTYRAG	2 cut(s)	356, 737
Sse9I	AATT	7 cut(s)	39, 245, 339, 415, 457, 607, 1071
SspI	AATATT	3 cut(s)	311, 506, 583
SspMI	CTAG	3 cut(s)	108, 330, 525
TaaI	ACNGT	3 cut(s)	160, 1009, 1189
TaiI	ACGT	1 cut(s)	640
TaqI	TCGA	4 cut(s)	549, 657, 884, 1004
TasI	AATT	7 cut(s)	39, 245, 339, 415, 457, 607, 1071
TatI	WGTACW	1 cut(s)	1058
TfiI	GAWTC	5 cut(s)	76, 401, 425, 1151, 1253
Tru1I	TTAA	4 cut(s)	149, 357, 461, 857
Tru9I	TTAA	4 cut(s)	149, 357, 461, 857
TscAI	CASTG	6 cut(s)	87, 220, 351, 543, 655, 1243
TseFI	GTSAC	2 cut(s)	82, 472
TseI	GCWGC	2 cut(s)	803, 1134
Tsp45I	GTSAC	2 cut(s)	82, 472
TspDTI	ATGAA	9 cut(s)	89, 216, 603, 618, 743, 807, 828, 939, 1044
TspRI	CASTG	6 cut(s)	87, 220, 351, 543, 655, 1243
Van91I	CCANNNNNTGG	1 cut(s)	13
Vha464I	CTTAAG	1 cut(s)	356
VpaK11BI	GGWCC	2 cut(s)	4, 1207
XapI	RAATTY	2 cut(s)	415, 607
XcmI	CCANNNNNNNNNTGG	1 cut(s)	379
XmiI	GTMKAC	1 cut(s)	1004
XspI	CTAG	3 cut(s)	108, 330, 525
ZrmI	AGTACT	1 cut(s)	1060

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.