pycom11g25050

Proline-rich nuclear receptor coactivator motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0011970
Physical Location & Seq
Reverse (-)
27915826 .. 27916461
636 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 636 bp
ATGGAGACTCTTCTGGTTGTGGCGCAGCATAAGAACCAGTACTATGGCCAGGGGAAGCCACACGGGCCGGGCCGAGTCGGCCCGTCGCCGTCCAAGGACTTCCGAGGGATCAATTGCCGGACTTTCCAATCCGGGTCAGGTATACTCCCAACCCCATCCAAGGCTTGCTCTACTCCTGTATCCAAACAGGGAGCATGCTCTGGTTCTCCTCCTAGGTTTTTAACTACACCTAGTCCAAACAAGATACATACATCTAGTCCAGTTTCACAGTCTGATAGCAGAACATTGATTAGAAGCACCCCAATTGCTATCAATGTCAACAACTCGAAGAAAGGCAAGCACTTCAATGGAAGTTTTTCATTTTCTGAGCTCTGGGCCGGTCCGGCTTACTCGAACTCTCCCCCACCGAGTTCGTTGCCAATCCCCAAGTTTTCAATCCGACCCAAGAGAACCGTGTCGCTCGAATTGCCCAAGTCGCCCGCTGATATCGAAATGCACCACCCAATTGCCAAGTCTACACCTGCATCCCCAACTAGGGAGCATGGTGGGTCTTCTGCTAGAGATCTCTTTCACAATGCTGACTCCGCGACCAAGACTCTGCGTCGCATTCTGAATCTCGATGTTGACGATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNRC

Protein Analysis

212

Amino Acids

22.66

Weight (kDa)

9.97

Isoelectric Point (pI)

66.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNRC PF15365 125 - 144 2.4e-07 Proline-rich nuclear receptor coactivator motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011970)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02715 AT4G02715
fragaria_vesca FvH4_2g23281
malus_domestica MD03G1262100.v1.1 MD11G1282800.v1.1
prunus_persica Prupe.8G238400_v2.0.a1
pyrus_communis pycom03g20990 pycom11g25050
rosa_chinensis RchiOBHm_Chr6g0290651
rosa_laevigata RLG00000012187
rosa_multiflora Rmu_co8113914.1_g000001 Rmu_sc0006791.1_g000005
rosa_roxburghii Rroxscaffold_7G00176830
rosa_rugosa Rorug06G0214000
rosa_samantha Rh6AG324500 Rh6BG332100 Rh6CG337800 Rh6DG325200
rosa_wichuraiana Rw6G028170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 529
Acc36I ACCTGC 1 cut(s) 529
AccI GTMKAC 2 cut(s) 142, 515
AccII CGCG 1 cut(s) 587
AciI CCGC 2 cut(s) 480, 585
AclWI GGATC 1 cut(s) 116
AcoI YGGCCR 1 cut(s) 46
AfaI GTAC 1 cut(s) 41
AfiI CCNNNNNNNGG 3 cut(s) 160, 534, 535
AgsI TTSAA 2 cut(s) 346, 435
AhdI GACNNNNNGTC 1 cut(s) 600
AjnI CCWGG 1 cut(s) 48
AluBI AGCT 1 cut(s) 370
AluI AGCT 1 cut(s) 370
Alw21I GWGCWC 1 cut(s) 372
AlwI GGATC 1 cut(s) 116
AoxI GGCC 5 cut(s) 46, 65, 70, 79, 375
ApeKI GCWGC 1 cut(s) 25
Asp700I GAANNNNTTC 1 cut(s) 355
AspA2I CCTAGG 1 cut(s) 212
AspLEI GCGC 1 cut(s) 25
AspS9I GGNCC 5 cut(s) 65, 70, 80, 375, 380
AsuC2I CCSGG 2 cut(s) 69, 133
AvaII GGWCC 1 cut(s) 380
AvrII CCTAGG 1 cut(s) 212
BaeI ACNNNNGTAYC 2 cut(s) 162, 195
BalI TGGCCA 1 cut(s) 48
BanII GRGCYC 1 cut(s) 372
BbsI GAAGAC 1 cut(s) 543
Bbv12I GWGCWC 1 cut(s) 372
BbvI GCAGC 1 cut(s) 37
BccI CCATC 1 cut(s) 163
BceAI ACGGC 1 cut(s) 73
BcgI CGANNNNNNTGC 2 cut(s) 397, 431
BciT130I CCWGG 1 cut(s) 50
BciVI GTATCC 1 cut(s) 190
BcnI CCSGG 2 cut(s) 69, 133
BfaI CTAG 5 cut(s) 213, 231, 255, 534, 558
BfuAI ACCTGC 1 cut(s) 529
BfuI GTATCC 1 cut(s) 190
BglI GCCNNNNNGGC 3 cut(s) 64, 78, 383
BglII AGATCT 1 cut(s) 562
BisI GCNGC 1 cut(s) 26
BlnI CCTAGG 1 cut(s) 212
BlsI GCNGC 1 cut(s) 27
BmcAI AGTACT 1 cut(s) 41
Bme1390I CCNGG 3 cut(s) 50, 69, 133
Bme18I GGWCC 1 cut(s) 380
BmeRI GACNNNNNGTC 1 cut(s) 600
BmgT120I GGNCC 5 cut(s) 65, 70, 80, 375, 380
BmrFI CCNGG 3 cut(s) 50, 69, 133
BmsI GCATC 1 cut(s) 533
BpiI GAAGAC 1 cut(s) 543
BpuMI CCSGG 2 cut(s) 69, 133
BsaJI CCNNGG 5 cut(s) 49, 93, 103, 159, 212
Bsc4I CCNNNNNNNGG 3 cut(s) 160, 534, 535
Bse118I RCCGGY 1 cut(s) 377
Bse1I ACTGG 2 cut(s) 37, 260
BseBI CCWGG 1 cut(s) 50
BseDI CCNNGG 5 cut(s) 49, 93, 103, 159, 212
BseGI GGATG 2 cut(s) 155, 524
BseLI CCNNNNNNNGG 3 cut(s) 160, 534, 535
BseMII CTCAG 1 cut(s) 357
BseNI ACTGG 2 cut(s) 37, 260
BseRI GAGGAG 1 cut(s) 198
BseXI GCAGC 1 cut(s) 37
Bsh1236I CGCG 1 cut(s) 587
BshFI GGCC 5 cut(s) 48, 67, 72, 81, 377
BsiHKAI GWGCWC 1 cut(s) 372
BsiSI CCGG 5 cut(s) 68, 118, 132, 378, 383
BslI CCNNNNNNNGG 3 cut(s) 160, 534, 535
BsmI GAATGC 1 cut(s) 606
BsnI GGCC 5 cut(s) 48, 67, 72, 81, 377
Bsp1286I GDGCHC 1 cut(s) 372
Bsp143I GATC 2 cut(s) 108, 562
BspACI CCGC 2 cut(s) 480, 585
BspANI GGCC 5 cut(s) 48, 67, 72, 81, 377
BspCNI CTCAG 1 cut(s) 358
BspFNI CGCG 1 cut(s) 587
BspMI ACCTGC 1 cut(s) 529
BspPI GGATC 1 cut(s) 116
BsrFI RCCGGY 1 cut(s) 377
BsrI ACTGG 2 cut(s) 37, 260
BssAI RCCGGY 1 cut(s) 377
BssECI CCNNGG 5 cut(s) 49, 93, 103, 159, 212
BssMI GATC 2 cut(s) 108, 562
BssNAI GTATAC 1 cut(s) 143
BssT1I CCWWGG 3 cut(s) 93, 159, 212
Bst1107I GTATAC 1 cut(s) 143
Bst2UI CCWGG 1 cut(s) 50
Bst4CI ACNGT 2 cut(s) 270, 454
Bst6I CTCTTC 1 cut(s) 15
BstC8I GCNNGC 4 cut(s) 166, 196, 338, 480
BstDEI CTNAG 1 cut(s) 366
BstF5I GGATG 2 cut(s) 155, 524
BstFNI CGCG 1 cut(s) 587
BstHHI GCGC 1 cut(s) 25
BstKTI GATC 2 cut(s) 111, 565
BstMBI GATC 2 cut(s) 108, 562
BstMWI GCNNNNNNNGC 6 cut(s) 64, 78, 383, 466, 475, 584
BstNI CCWGG 1 cut(s) 50
BstNSI RCATGY 1 cut(s) 198
BstSCI CCNGG 3 cut(s) 48, 67, 131
BstUI CGCG 1 cut(s) 587
BstV1I GCAGC 1 cut(s) 37
BstV2I GAAGAC 1 cut(s) 543
BstX2I RGATCY 1 cut(s) 562
BstXI CCANNNNNNTGG 1 cut(s) 44
BstYI RGATCY 1 cut(s) 562
BstZ17I GTATAC 1 cut(s) 143
BsuI GTATCC 1 cut(s) 190
BsuRI GGCC 5 cut(s) 48, 67, 72, 81, 377
BtsCI GGATG 2 cut(s) 155, 524
BveI ACCTGC 1 cut(s) 529
Cac8I GCNNGC 4 cut(s) 166, 196, 338, 480
CfoI GCGC 1 cut(s) 25
Cfr10I RCCGGY 1 cut(s) 377
Cfr13I GGNCC 5 cut(s) 65, 70, 80, 375, 380
CpoI CGGWCCG 1 cut(s) 380
CseI GACGC 1 cut(s) 590
Csp6I GTAC 1 cut(s) 40
CspI CGGWCCG 1 cut(s) 380
CviAII CATG 2 cut(s) 195, 542
CviJI RGCY 9 cut(s) 48, 58, 67, 72, 81, 164, 370, 377, 386
CviKI_1 RGCY 9 cut(s) 48, 58, 67, 72, 81, 164, 370, 377, 386
CviQI GTAC 1 cut(s) 40
DdeI CTNAG 1 cut(s) 366
DpnI GATC 2 cut(s) 110, 564
DpnII GATC 2 cut(s) 108, 562
DriI GACNNNNNGTC 1 cut(s) 600
EaeI YGGCCR 1 cut(s) 46
Eam1104I CTCTTC 1 cut(s) 15
Eam1105I GACNNNNNGTC 1 cut(s) 600
EarI CTCTTC 1 cut(s) 15
Ecl136II GAGCTC 1 cut(s) 370
Eco130I CCWWGG 3 cut(s) 93, 159, 212
Eco24I GRGCYC 1 cut(s) 372
Eco32I GATATC 1 cut(s) 487
Eco47I GGWCC 1 cut(s) 380
Eco53kI GAGCTC 1 cut(s) 370
EcoICRI GAGCTC 1 cut(s) 370
EcoRII CCWGG 1 cut(s) 48
EcoRV GATATC 1 cut(s) 487
EcoT14I CCWWGG 3 cut(s) 93, 159, 212
EcoT38I GRGCYC 1 cut(s) 372
ErhI CCWWGG 3 cut(s) 93, 159, 212
FaeI CATG 2 cut(s) 198, 545
FaiI YATR 6 cut(s) 30, 45, 143, 196, 249, 543
FatI CATG 2 cut(s) 194, 541
FauI CCCGC 1 cut(s) 487
FblI GTMKAC 2 cut(s) 142, 515
Fnu4HI GCNGC 1 cut(s) 26
FokI GGATG 2 cut(s) 142, 511
FriOI GRGCYC 1 cut(s) 372
Fsp4HI GCNGC 1 cut(s) 26
FspBI CTAG 5 cut(s) 213, 231, 255, 534, 558
GlaI GCGC 1 cut(s) 24
GluI GCNGC 1 cut(s) 26
HaeIII GGCC 5 cut(s) 48, 67, 72, 81, 377
HapII CCGG 5 cut(s) 68, 118, 132, 378, 383
HgaI GACGC 1 cut(s) 590
HhaI GCGC 1 cut(s) 25
Hin1II CATG 2 cut(s) 198, 545
Hin6I GCGC 1 cut(s) 23
HinP1I GCGC 1 cut(s) 23
HincII GTYRAC 2 cut(s) 319, 625
HindII GTYRAC 2 cut(s) 319, 625
HinfI GANTC 5 cut(s) 7, 75, 581, 595, 613
HpaII CCGG 5 cut(s) 68, 118, 132, 378, 383
Hpy166II GTNNAC 4 cut(s) 143, 319, 516, 625
Hpy188I TCNGA 5 cut(s) 104, 274, 367, 440, 612
Hpy188III TCNNGA 1 cut(s) 617
Hpy8I GTNNAC 4 cut(s) 143, 319, 516, 625
Hpy99I CGWCG 2 cut(s) 88, 606
HpyCH4III ACNGT 2 cut(s) 270, 454
HpyCH4V TGCA 2 cut(s) 496, 524
HpyF10VI GCNNNNNNNGC 6 cut(s) 64, 78, 383, 466, 475, 584
HpyF3I CTNAG 1 cut(s) 366
Hsp92II CATG 2 cut(s) 198, 545
HspAI GCGC 1 cut(s) 23
Kzo9I GATC 2 cut(s) 108, 562
LmnI GCTCC 2 cut(s) 191, 538
Lsp1109I GCAGC 1 cut(s) 37
LweI GCATC 1 cut(s) 533
MaeI CTAG 5 cut(s) 213, 231, 255, 534, 558
MalI GATC 2 cut(s) 110, 564
MboI GATC 2 cut(s) 108, 562
MboII GAAGA 2 cut(s) 340, 543
MfeI CAATTG 3 cut(s) 112, 303, 504
MflI RGATCY 1 cut(s) 562
MhlI GDGCHC 1 cut(s) 372
MlsI TGGCCA 1 cut(s) 48
MluCI AATT 4 cut(s) 112, 303, 464, 504
MluNI TGGCCA 1 cut(s) 48
MlyI GAGTC 3 cut(s) 84, 575, 589
MmeI TCCRAC 1 cut(s) 463
MnlI CCTC 2 cut(s) 98, 219
Mox20I TGGCCA 1 cut(s) 48
MroXI GAANNNNTTC 1 cut(s) 355
MscI TGGCCA 1 cut(s) 48
MseI TTAA 1 cut(s) 221
MslI CAYNNNNRTG 1 cut(s) 345
Msp20I TGGCCA 1 cut(s) 48
MspA1I CMGCKG 1 cut(s) 482
MspI CCGG 5 cut(s) 68, 118, 132, 378, 383
MspR9I CCNGG 3 cut(s) 50, 69, 133
MunI CAATTG 3 cut(s) 112, 303, 504
Mva1269I GAATGC 1 cut(s) 606
MvaI CCWGG 1 cut(s) 50
MvnI CGCG 1 cut(s) 587
MwoI GCNNNNNNNGC 6 cut(s) 64, 78, 383, 466, 475, 584
NciI CCSGG 2 cut(s) 69, 133
NdeII GATC 2 cut(s) 108, 562
NlaIII CATG 2 cut(s) 198, 545
NmeAIII GCCGAG 1 cut(s) 98
NspI RCATGY 1 cut(s) 198
PaeI GCATGC 1 cut(s) 198
PaqCI CACCTGC 1 cut(s) 529
PcsI WCGNNNNNNNCGW 1 cut(s) 624
PctI GAATGC 1 cut(s) 606
PdmI GAANNNNTTC 1 cut(s) 355
PfeI GAWTC 1 cut(s) 613
PkrI GCNGC 1 cut(s) 27
PleI GAGTC 3 cut(s) 83, 575, 589
PpsI GAGTC 3 cut(s) 83, 575, 589
Psp124BI GAGCTC 1 cut(s) 372
Psp6I CCWGG 1 cut(s) 48
PspGI CCWGG 1 cut(s) 48
PspPI GGNCC 5 cut(s) 65, 70, 80, 375, 380
PsuI RGATCY 1 cut(s) 562
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
RseI CAYNNNNRTG 1 cut(s) 345
Rsr2I CGGWCCG 1 cut(s) 380
RsrII CGGWCCG 1 cut(s) 380
SacI GAGCTC 1 cut(s) 372
SaqAI TTAA 1 cut(s) 221
SatI GCNGC 1 cut(s) 26
Sau3AI GATC 2 cut(s) 108, 562
Sau96I GGNCC 5 cut(s) 65, 70, 80, 375, 380
ScaI AGTACT 1 cut(s) 41
SchI GAGTC 3 cut(s) 84, 575, 589
ScrFI CCNGG 3 cut(s) 50, 69, 133
SduI GDGCHC 1 cut(s) 372
SetI ASST 5 cut(s) 142, 218, 232, 372, 523
SfaNI GCATC 1 cut(s) 533
SfiI GGCCNNNNNGGCC 1 cut(s) 78
SinI GGWCC 1 cut(s) 380
SmiMI CAYNNNNRTG 1 cut(s) 345
SphI GCATGC 1 cut(s) 198
Sse9I AATT 4 cut(s) 112, 303, 464, 504
SsiI CCGC 2 cut(s) 480, 585
SspMI CTAG 5 cut(s) 213, 231, 255, 534, 558
SstI GAGCTC 1 cut(s) 372
StyD4I CCNGG 3 cut(s) 48, 67, 131
StyI CCWWGG 3 cut(s) 93, 159, 212
TaaI ACNGT 2 cut(s) 270, 454
TaqI TCGA 5 cut(s) 326, 392, 462, 489, 618
TasI AATT 4 cut(s) 112, 303, 464, 504
TatI WGTACW 1 cut(s) 39
TfiI GAWTC 1 cut(s) 613
Tru1I TTAA 1 cut(s) 221
Tru9I TTAA 1 cut(s) 221
TseI GCWGC 1 cut(s) 25
TspDTI ATGAA 1 cut(s) 348
VpaK11BI GGWCC 1 cut(s) 380
XceI RCATGY 1 cut(s) 198
XmaJI CCTAGG 1 cut(s) 212
XmiI GTMKAC 2 cut(s) 142, 515
XmnI GAANNNNTTC 1 cut(s) 355
XspI CTAG 5 cut(s) 213, 231, 255, 534, 558
ZrmI AGTACT 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.