Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0013614

Physical Location & Seq

Genomic Coordinates Reverse (-)

28094203 .. 28096051

Gene Structure 1849 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGGGAAGAGAGGAGCTGCTTCAAGGAAAGAAGAAATGGCGCAGGCTCAGCCTCACACGTTAAAGCCTAAGGCAACAAATGCATCATCTGAAACTGAGGAACCGCAATCTGAGGGACCAAATCCTGCTCCTGAGAGAGTGGAACAGCACCCCGAAAACGCTAGCCCGAAAACTAACTCAAACCTTAGGATGCAAGAAAAATCTGCCAAACCATCTCATTCAAGAAAGAGAGTCAAGCAGTACAATGCCGTTGTTAGGCGTTCTCTGCGCATTCGTAACAGTGTTACGCCTGTTGAAAATGGGGACATAGAGCCTGTGTACGAAACTGTTAGTGAGAGTGAGACGGAAGATGAGCAGCCTCTTTTGGAGGAACCCCCTGTGAATGGGACAAACTTGGAGGAAGGACAGACCTCGGGCGAGAAAAGCATGGAAGAAAAAATGGACTATCTTCTACAACTCTTGGAAAAAATGAACTCAAAGGAAAATAAGAGAAGCTCTGGATTTTCTGAAAGCCCAGAGAAGAGATACAAAAGCTTGTACATCGACTCTCAGAAGAAGATTGAAGCCTTGACAAATGAGAACCATGAGCTTACTTCGAAGTTGGAAGTTGTTCATGCCAAACTTGAAGGGTTTGAGAAAGGGACTAATGCATTTTCTGAAGTGATGGAGAAAATGAAGGACGTGATTTTGGTTTCAACTTTATCGAAAGCTACCGAAACATTTATGAATTTCTCATCTCAAGCAGCACGTGATGCACTTTCTCCTCAGGATTCTGCTCAAGATCGCAAGTTTGCATCTAAGAACAAGAGAAAGAAGCAGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

275

Amino Acids

30.84

Weight (kDa)

6.58

Isoelectric Point (pI)

69.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013614)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g23590
malus_domestica	MD07G1082500.v1.1 MD11G1285300.v1.1
prunus_persica	Prupe.2G108100_v2.0.a1 Prupe.2G108100_v2.0.a1 Prupe.8G241200_v2.0.a1
pyrus_communis	pycom07g06590 pycom11g25290
rosa_chinensis	RchiOBHm_Chr6g0291061
rosa_laevigata	RLG00000012150
rosa_multiflora	Rmu_sc0004642.1_g000004
rosa_roxburghii	Rroxscaffold_7G00176410
rosa_rugosa	Rorug06G0217300
rosa_samantha	Rh6AG327400 Rh6BG334900 Rh6CG341100 Rh6DG328400
rosa_wichuraiana	Rw6G028480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	269
AciI	CCGC	1 cut(s)	104
AcsI	RAATTY	1 cut(s)	727
AcuI	CTGAAG	1 cut(s)	678
AcvI	CACGTG	1 cut(s)	749
AfaI	GTAC	3 cut(s)	242, 320, 539
AfiI	CCNNNNNNNGG	2 cut(s)	255, 383
AflIII	ACRYGT	1 cut(s)	57
AgsI	TTSAA	6 cut(s)	24, 222, 296, 563, 626, 696
AjiI	CACGTC	1 cut(s)	682
AluBI	AGCT	5 cut(s)	17, 495, 534, 589, 710
AluI	AGCT	5 cut(s)	17, 495, 534, 589, 710
Alw26I	GTCTC	1 cut(s)	335
Ama87I	CYCGRG	1 cut(s)	412
ApeKI	GCWGC	3 cut(s)	17, 355, 743
ApoI	RAATTY	1 cut(s)	727
Asp700I	GAANNNNTTC	1 cut(s)	609
AspLEI	GCGC	2 cut(s)	43, 270
AspS9I	GGNCC	1 cut(s)	116
AsuII	TTCGAA	1 cut(s)	596
AsuNHI	GCTAGC	1 cut(s)	161
AvaI	CYCGRG	1 cut(s)	412
AvaII	GGWCC	1 cut(s)	116
AxyI	CCTNAGG	3 cut(s)	69, 185, 765
BbrPI	CACGTG	1 cut(s)	749
BbvI	GCAGC	3 cut(s)	4, 367, 755
BccI	CCATC	2 cut(s)	220, 658
BceAI	ACGGC	1 cut(s)	233
BcoDI	GTCTC	1 cut(s)	335
BfaI	CTAG	1 cut(s)	162
BisI	GCNGC	3 cut(s)	18, 356, 744
BlpI	GCTNAGC	1 cut(s)	48
BlsI	GCNGC	3 cut(s)	19, 357, 745
Bme18I	GGWCC	1 cut(s)	116
BmeT110I	CYCGRG	1 cut(s)	412
BmgBI	CACGTC	1 cut(s)	682
BmgT120I	GGNCC	1 cut(s)	116
BmiI	GGNNCC	3 cut(s)	102, 117, 372
BmsI	GCATC	4 cut(s)	92, 180, 742, 803
BmtI	GCTAGC	1 cut(s)	165
Bpu1102I	GCTNAGC	1 cut(s)	48
Bpu14I	TTCGAA	1 cut(s)	596
BpuEI	CTTGAG	2 cut(s)	723, 762
BsaAI	YACGTR	1 cut(s)	749
BsaJI	CCNNGG	1 cut(s)	411
Bsc4I	CCNNNNNNNGG	2 cut(s)	255, 383
Bse21I	CCTNAGG	3 cut(s)	69, 185, 765
BseDI	CCNNGG	1 cut(s)	411
BseGI	GGATG	1 cut(s)	195
BseLI	CCNNNNNNNGG	2 cut(s)	255, 383
BseMII	CTCAG	6 cut(s)	62, 87, 102, 123, 563, 779
BseRI	GAGGAG	2 cut(s)	27, 753
BseXI	GCAGC	3 cut(s)	4, 367, 755
BsiHKCI	CYCGRG	1 cut(s)	412
BslFI	GGGAC	4 cut(s)	129, 317, 400, 655
BslI	CCNNNNNNNGG	2 cut(s)	255, 383
BsmAI	GTCTC	1 cut(s)	335
BsmBI	CGTCTC	1 cut(s)	335
BsmFI	GGGAC	4 cut(s)	129, 317, 400, 655
BsmI	GAATGC	1 cut(s)	270
BsoBI	CYCGRG	1 cut(s)	412
Bsp119I	TTCGAA	1 cut(s)	596
Bsp1407I	TGTACA	1 cut(s)	537
Bsp143I	GATC	1 cut(s)	781
Bsp1720I	GCTNAGC	1 cut(s)	48
BspACI	CCGC	1 cut(s)	104
BspCNI	CTCAG	6 cut(s)	61, 88, 103, 124, 562, 778
BspLI	GGNNCC	3 cut(s)	102, 117, 372
BspOI	GCTAGC	1 cut(s)	165
BspT104I	TTCGAA	1 cut(s)	596
BsrGI	TGTACA	1 cut(s)	537
BssECI	CCNNGG	1 cut(s)	411
BssMI	GATC	1 cut(s)	781
Bst4CI	ACNGT	2 cut(s)	281, 328
Bst6I	CTCTTC	2 cut(s)	2, 515
BstAPI	GCANNNNNTGC	2 cut(s)	80, 752
BstAUI	TGTACA	1 cut(s)	537
BstBAI	YACGTR	1 cut(s)	749
BstBI	TTCGAA	1 cut(s)	596
BstC8I	GCNNGC	2 cut(s)	45, 163
BstDEI	CTNAG	9 cut(s)	48, 69, 96, 111, 132, 185, 549, 765, 798
BstF5I	GGATG	1 cut(s)	195
BstHHI	GCGC	2 cut(s)	43, 270
BstKTI	GATC	1 cut(s)	784
BstMAI	GTCTC	1 cut(s)	335
BstMBI	GATC	1 cut(s)	781
BstMWI	GCNNNNNNNGC	5 cut(s)	49, 80, 265, 423, 752
BstV1I	GCAGC	3 cut(s)	4, 367, 755
Bsu36I	CCTNAGG	3 cut(s)	69, 185, 765
BtrI	CACGTC	1 cut(s)	682
BtsCI	GGATG	1 cut(s)	195
BtsIMutI	CAGTG	1 cut(s)	286
Cac8I	GCNNGC	2 cut(s)	45, 163
CfoI	GCGC	2 cut(s)	43, 270
Cfr13I	GGNCC	1 cut(s)	116
Csp6I	GTAC	3 cut(s)	241, 319, 538
CviAII	CATG	3 cut(s)	427, 584, 614
CviQI	GTAC	3 cut(s)	241, 319, 538
DdeI	CTNAG	9 cut(s)	48, 69, 96, 111, 132, 185, 549, 765, 798
DpnI	GATC	1 cut(s)	783
DpnII	GATC	1 cut(s)	781
Eam1104I	CTCTTC	2 cut(s)	2, 515
EarI	CTCTTC	2 cut(s)	2, 515
Eco47I	GGWCC	1 cut(s)	116
Eco57I	CTGAAG	1 cut(s)	678
Eco72I	CACGTG	1 cut(s)	749
Eco81I	CCTNAGG	3 cut(s)	69, 185, 765
Eco88I	CYCGRG	1 cut(s)	412
EcoT22I	ATGCAT	2 cut(s)	85, 652
Esp3I	CGTCTC	1 cut(s)	335
FaeI	CATG	3 cut(s)	430, 587, 617
FaiI	YATR	5 cut(s)	308, 428, 585, 615, 725
FaqI	GGGAC	4 cut(s)	129, 317, 400, 655
FatI	CATG	3 cut(s)	426, 583, 613
Fnu4HI	GCNGC	3 cut(s)	18, 356, 744
FokI	GGATG	1 cut(s)	202
Fsp4HI	GCNGC	3 cut(s)	18, 356, 744
FspBI	CTAG	1 cut(s)	162
FspI	TGCGCA	1 cut(s)	269
GlaI	GCGC	2 cut(s)	42, 269
GluI	GCNGC	3 cut(s)	18, 356, 744
HhaI	GCGC	2 cut(s)	43, 270
Hin1II	CATG	3 cut(s)	430, 587, 617
Hin6I	GCGC	2 cut(s)	41, 268
HinP1I	GCGC	2 cut(s)	41, 268
HindIII	AAGCTT	1 cut(s)	532
HinfI	GANTC	3 cut(s)	231, 545, 770
Hpy166II	GTNNAC	1 cut(s)	319
Hpy188I	TCNGA	5 cut(s)	91, 112, 508, 552, 658
Hpy188III	TCNNGA	5 cut(s)	131, 222, 498, 767, 779
Hpy8I	GTNNAC	1 cut(s)	319
HpyAV	CCTTC	3 cut(s)	395, 620, 670
HpyCH4III	ACNGT	2 cut(s)	281, 328
HpyCH4IV	ACGT	3 cut(s)	59, 681, 748
HpyCH4V	TGCA	5 cut(s)	83, 193, 650, 755, 794
HpyF10VI	GCNNNNNNNGC	5 cut(s)	49, 80, 265, 423, 752
HpyF3I	CTNAG	9 cut(s)	48, 69, 96, 111, 132, 185, 549, 765, 798
HpySE526I	ACGT	3 cut(s)	59, 681, 748
Hsp92II	CATG	3 cut(s)	430, 587, 617
HspAI	GCGC	2 cut(s)	41, 268
Kzo9I	GATC	1 cut(s)	781
LmnI	GCTCC	2 cut(s)	14, 133
LpnPI	CCDG	9 cut(s)	29, 138, 144, 303, 327, 390, 483, 528, 752
Lsp1109I	GCAGC	3 cut(s)	4, 367, 755
LweI	GCATC	4 cut(s)	92, 180, 742, 803
MaeI	CTAG	1 cut(s)	162
MaeII	ACGT	3 cut(s)	59, 681, 748
MaeIII	GTNAC	2 cut(s)	275, 283
MalI	GATC	1 cut(s)	783
MboI	GATC	1 cut(s)	781
MboII	GAAGA	8 cut(s)	19, 44, 359, 440, 443, 532, 565, 568
MluCI	AATT	1 cut(s)	727
MlyI	GAGTC	2 cut(s)	240, 539
MmeI	TCCRAC	1 cut(s)	582
MnlI	CCTC	9 cut(s)	5, 63, 91, 106, 361, 369, 391, 421, 774
Mph1103I	ATGCAT	2 cut(s)	85, 652
MroXI	GAANNNNTTC	1 cut(s)	609
MseI	TTAA	2 cut(s)	62, 823
Mva1269I	GAATGC	1 cut(s)	270
MwoI	GCNNNNNNNGC	5 cut(s)	49, 80, 265, 423, 752
NdeII	GATC	1 cut(s)	781
NheI	GCTAGC	1 cut(s)	161
NlaIII	CATG	3 cut(s)	430, 587, 617
NlaIV	GGNNCC	3 cut(s)	102, 117, 372
NsbI	TGCGCA	1 cut(s)	269
NsiI	ATGCAT	2 cut(s)	85, 652
NspV	TTCGAA	1 cut(s)	596
PctI	GAATGC	1 cut(s)	270
PdmI	GAANNNNTTC	1 cut(s)	609
PfeI	GAWTC	1 cut(s)	770
PkrI	GCNGC	3 cut(s)	19, 357, 745
PleI	GAGTC	2 cut(s)	239, 539
PmaCI	CACGTG	1 cut(s)	749
PmlI	CACGTG	1 cut(s)	749
PpsI	GAGTC	2 cut(s)	239, 539
Ppu21I	YACGTR	1 cut(s)	749
PspCI	CACGTG	1 cut(s)	749
PspN4I	GGNNCC	3 cut(s)	102, 117, 372
PspPI	GGNCC	1 cut(s)	116
RsaI	GTAC	3 cut(s)	242, 320, 539
RsaNI	GTAC	3 cut(s)	241, 319, 538
SaqAI	TTAA	2 cut(s)	62, 823
SatI	GCNGC	3 cut(s)	18, 356, 744
Sau3AI	GATC	1 cut(s)	781
Sau96I	GGNCC	1 cut(s)	116
SchI	GAGTC	2 cut(s)	240, 539
SfaNI	GCATC	4 cut(s)	92, 180, 742, 803
SfuI	TTCGAA	1 cut(s)	596
SinI	GGWCC	1 cut(s)	116
SmlI	CTYRAG	2 cut(s)	738, 777
SmoI	CTYRAG	2 cut(s)	738, 777
Sse9I	AATT	1 cut(s)	727
SsiI	CCGC	1 cut(s)	104
SspMI	CTAG	1 cut(s)	162
TaaI	ACNGT	2 cut(s)	281, 328
TaiI	ACGT	3 cut(s)	62, 684, 751
TaqI	TCGA	3 cut(s)	543, 596, 704
TasI	AATT	1 cut(s)	727
TatI	WGTACW	2 cut(s)	240, 537
TfiI	GAWTC	1 cut(s)	770
Tru1I	TTAA	2 cut(s)	62, 823
Tru9I	TTAA	2 cut(s)	62, 823
TscAI	CASTG	1 cut(s)	286
TseI	GCWGC	3 cut(s)	17, 355, 743
TspDTI	ATGAA	4 cut(s)	485, 602, 689, 740
TspGWI	ACGGA	1 cut(s)	359
TspRI	CASTG	1 cut(s)	286
VpaK11BI	GGWCC	1 cut(s)	116
XapI	RAATTY	1 cut(s)	727
XmnI	GAANNNNTTC	1 cut(s)	609
XspI	CTAG	1 cut(s)	162
Zsp2I	ATGCAT	2 cut(s)	85, 652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.