Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0009030

Physical Location & Seq

Genomic Coordinates Reverse (-)

28693479 .. 28694720

Gene Structure 1242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGCTGGTAGTAATGAAGTCAACGTCAATGAATCCAAGAAAGTTGTCCCTCTCAACACATGGGTACTAATCTCCAATTTCAAGCTGGCTTACAACCTCCTCCGCCGTGCCGACGGAACATTCAACCGCGAGCTGGCGGAGTTCCTCGACCGAAAAGTCCCCGCCAACACAGTTCCGGTTGACGGGGTTTTCTCGTTTGATCACGTCGACAGAGCCACCGGCCTCCTCAACCGTGTTTACCAGTTTGCGCCCCAAAACGAGTCTCAGTGGGGTATTGTGAATCTTGAGCAGCCCTTGAGCACCACCGAGGTCGTCCCGGTCATAATCTTTTTCCACGGCGGAAGCTTCACTCATTCCTCCGCCAACAGCGCCATCTACGATACTTTCTGCCGCCGCCTTGTCAACACTTGCAAGGCGGTTGTAGTCTCCGTTAACTACCGCCGTTCGCCAGAACATCGGTATCCTTGTGCTTATGAGGACGGATGGGCGGCTCTCAAGTGGGTGAAATCGAGAAAGTGGCTGCAGAGCGGGAAGGGGAAGGACTTGAAAGTTCATGTCTACTTGGCTGGAGACAGCTCCGGCGGCAACATTGCTCACCACGTCGCGGTGAAGGCAGCAGAAGCGGAGGTTGAGGTGATCGGAAACATCCTTCTCCACCCGATGTTTGCAGGGCAAAAGAGAACGGAATCAGAGAAGAGATTGGACGGGAAGTACTTCGTAACGATACAAGACCGCGACTGGTACTGGCGGGCATTTCTCCCCGAAGGCGAAGATAGAGATCGATCCGGCGTGTCACGTTTTCGGCCCGAGGGACAAGAGCCTCGAGGGCTTGAAATTTCCCAAGAGTCTCGTTGTTGTGGCTGGCTTCGATCTTATGCAAGATTGGCAATTGGCCTATGTGCAAGGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005975 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009311 GO:0009312 GO:0009653 GO:0009719 GO:0009725 GO:0009739 GO:0009755 GO:0009791 GO:0009892 GO:0009908 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010154 GO:0010325 GO:0010331 GO:0010468 GO:0010476 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0016051 GO:0016787 GO:0019222 GO:0019840 GO:0022414 GO:0023051 GO:0023052 GO:0023056 GO:0031406 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036094 GO:0042221 GO:0042562 GO:0043167 GO:0043168 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044238 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048518 GO:0048519 GO:0048522 GO:0048530 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0080154 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1901576 GO:1901700 GO:1901701 GO:1905392 GO:1905516 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

304

Amino Acids

34.24

Weight (kDa)

8.97

Isoelectric Point (pI)

44.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BD-FAE	PF20434	97 - 211	7.6e-12	BD-FAE
COesterase	PF00135	100 - 169	7.4e-06	Carboxylesterase family
Abhydrolase_3	PF07859	108 - 265	1.7e-46	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63010
fragaria_vesca	FvH4_2g24370 FvH4_2g24370 FvH4_3g11720
malus_domestica	MD03G1273300.v1.1 MD11G1296000.v1.1
prunus_persica	Prupe.8G249800_v2.0.a1 Prupe.8G249800_v2.0.a1 Prupe.8G249800_v2.0.a1 Prupe.8G249800_v2.0.a1
pyrus_communis	pycom03g21780 pycom11g26050
rosa_chinensis	RchiOBHm_Chr6g0292241
rosa_laevigata	RLG00000012050
rosa_multiflora	Rmu_sc0002993.1_g000009
rosa_roxburghii	Rroxscaffold_7G00175310
rosa_rugosa	Rorug06G0224800
rosa_samantha	Rh6AG337800 Rh6BG345100 Rh6CG352200 Rh6DG338100
rosa_wichuraiana	Rw6G029420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	155
AbsI	CCTCGAGG	1 cut(s)	822
AccBSI	CCGCTC	1 cut(s)	528
AccI	GTMKAC	2 cut(s)	207, 558
AccII	CGCG	3 cut(s)	129, 605, 735
AclWI	GGATC	1 cut(s)	777
AcsI	RAATTY	1 cut(s)	834
AfaI	GTAC	3 cut(s)	66, 713, 743
AfiI	CCNNNNNNNGG	3 cut(s)	133, 182, 604
AgsI	TTSAA	4 cut(s)	82, 124, 547, 833
AjiI	CACGTC	2 cut(s)	205, 601
AluBI	AGCT	4 cut(s)	85, 133, 345, 576
AluI	AGCT	4 cut(s)	85, 133, 345, 576
Alw21I	GWGCWC	1 cut(s)	302
Alw26I	GTCTC	4 cut(s)	267, 430, 564, 852
AlwI	GGATC	1 cut(s)	777
Ama87I	CYCGRG	2 cut(s)	806, 822
AoxI	GGCC	3 cut(s)	220, 803, 892
ApeKI	GCWGC	3 cut(s)	289, 520, 614
ApoI	RAATTY	1 cut(s)	834
Asp700I	GAANNNNTTC	1 cut(s)	713
AspLEI	GCGC	2 cut(s)	250, 371
AspS9I	GGNCC	1 cut(s)	804
AsuC2I	CCSGG	1 cut(s)	317
AsuHPI	GGTGA	4 cut(s)	514, 587, 619, 646
AvaI	CYCGRG	2 cut(s)	806, 822
BaeI	ACNNNNGTAYC	2 cut(s)	443, 476
Bbv12I	GWGCWC	1 cut(s)	302
BbvI	GCAGC	3 cut(s)	301, 507, 626
BccI	CCATC	2 cut(s)	380, 477
BceAI	ACGGC	3 cut(s)	90, 352, 426
BciVI	GTATCC	1 cut(s)	471
BclI	TGATCA	1 cut(s)	199
BcnI	CCSGG	1 cut(s)	317
BcoDI	GTCTC	4 cut(s)	267, 430, 564, 852
BfmI	CTRYAG	1 cut(s)	521
BfoI	RGCGCY	1 cut(s)	372
BfuI	GTATCC	1 cut(s)	471
BglI	GCCNNNNNGGC	1 cut(s)	826
BisI	GCNGC	7 cut(s)	290, 391, 394, 489, 521, 583, 615
BlsI	GCNGC	7 cut(s)	291, 392, 395, 490, 522, 584, 616
BmcAI	AGTACT	1 cut(s)	713
Bme1390I	CCNGG	1 cut(s)	317
BmeT110I	CYCGRG	2 cut(s)	806, 822
BmgBI	CACGTC	2 cut(s)	205, 601
BmgT120I	GGNCC	1 cut(s)	804
BmrFI	CCNGG	1 cut(s)	317
BpmI	CTGGAG	1 cut(s)	588
BpuEI	CTTGAG	3 cut(s)	305, 316, 479
BpuMI	CCSGG	1 cut(s)	317
Bsa29I	ATCGAT	1 cut(s)	781
BsaBI	GATNNNNATC	1 cut(s)	777
BsaJI	CCNNGG	3 cut(s)	306, 334, 807
BsaWI	WCCGGW	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	3 cut(s)	133, 182, 604
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	3 cut(s)	241, 743, 749
Bse3DI	GCAATG	1 cut(s)	588
Bse8I	GATNNNNATC	1 cut(s)	777
BseCI	ATCGAT	1 cut(s)	781
BseDI	CCNNGG	3 cut(s)	306, 334, 807
BseGI	GGATG	2 cut(s)	488, 645
BseJI	GATNNNNATC	1 cut(s)	777
BseLI	CCNNNNNNNGG	3 cut(s)	133, 182, 604
BseMI	GCAATG	1 cut(s)	588
BseMII	CTCAG	1 cut(s)	278
BseNI	ACTGG	3 cut(s)	241, 743, 749
BseRI	GAGGAG	2 cut(s)	89, 215
BseXI	GCAGC	3 cut(s)	301, 507, 626
Bsh1236I	CGCG	3 cut(s)	129, 605, 735
Bsh1285I	CGRYCG	1 cut(s)	151
BshFI	GGCC	3 cut(s)	222, 805, 894
BshVI	ATCGAT	1 cut(s)	781
BsiEI	CGRYCG	1 cut(s)	151
BsiHKAI	GWGCWC	1 cut(s)	302
BsiHKCI	CYCGRG	2 cut(s)	806, 822
BsiSI	CCGG	5 cut(s)	176, 219, 317, 579, 786
BslFI	GGGAC	4 cut(s)	32, 143, 299, 825
BslI	CCNNNNNNNGG	3 cut(s)	133, 182, 604
BsmAI	GTCTC	4 cut(s)	267, 430, 564, 852
BsmFI	GGGAC	4 cut(s)	32, 143, 299, 825
BsnI	GGCC	3 cut(s)	222, 805, 894
BsoBI	CYCGRG	2 cut(s)	806, 822
Bsp1286I	GDGCHC	1 cut(s)	302
Bsp143I	GATC	5 cut(s)	199, 636, 778, 782, 869
BspANI	GGCC	3 cut(s)	222, 805, 894
BspCNI	CTCAG	1 cut(s)	277
BspDI	ATCGAT	1 cut(s)	781
BspFNI	CGCG	3 cut(s)	129, 605, 735
BspMAI	CTGCAG	1 cut(s)	525
BspPI	GGATC	1 cut(s)	777
BsrBI	CCGCTC	1 cut(s)	528
BsrDI	GCAATG	1 cut(s)	588
BsrFI	RCCGGY	1 cut(s)	218
BsrI	ACTGG	3 cut(s)	241, 743, 749
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	3 cut(s)	306, 334, 807
BssMI	GATC	5 cut(s)	199, 636, 778, 782, 869
Bst4CI	ACNGT	2 cut(s)	172, 233
Bst6I	CTCTTC	1 cut(s)	689
BstC8I	GCNNGC	5 cut(s)	87, 131, 135, 750, 863
BstDEI	CTNAG	1 cut(s)	264
BstDSI	CCRYGG	1 cut(s)	334
BstF5I	GGATG	2 cut(s)	488, 645
BstFNI	CGCG	3 cut(s)	129, 605, 735
BstH2I	RGCGCY	1 cut(s)	372
BstHHI	GCGC	2 cut(s)	250, 371
BstKTI	GATC	5 cut(s)	202, 639, 781, 785, 872
BstMAI	GTCTC	4 cut(s)	267, 430, 564, 852
BstMBI	GATC	5 cut(s)	199, 636, 778, 782, 869
BstMCI	CGRYCG	1 cut(s)	151
BstMWI	GCNNNNNNNGC	6 cut(s)	368, 582, 611, 620, 826, 884
BstSCI	CCNGG	1 cut(s)	315
BstSFI	CTRYAG	1 cut(s)	521
BstUI	CGCG	3 cut(s)	129, 605, 735
BstV1I	GCAGC	3 cut(s)	301, 507, 626
Bsu15I	ATCGAT	1 cut(s)	781
BsuI	GTATCC	1 cut(s)	471
BsuRI	GGCC	3 cut(s)	222, 805, 894
BsuTUI	ATCGAT	1 cut(s)	781
BtgI	CCRYGG	1 cut(s)	334
BtrI	CACGTC	2 cut(s)	205, 601
BtsCI	GGATG	2 cut(s)	488, 645
BtsIMutI	CAGTG	1 cut(s)	272
Cac8I	GCNNGC	5 cut(s)	87, 131, 135, 750, 863
CfoI	GCGC	2 cut(s)	250, 371
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	1 cut(s)	804
ClaI	ATCGAT	1 cut(s)	781
Csp6I	GTAC	3 cut(s)	65, 712, 742
CviAII	CATG	2 cut(s)	60, 554
CviQI	GTAC	3 cut(s)	65, 712, 742
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	5 cut(s)	201, 638, 780, 784, 871
DpnII	GATC	5 cut(s)	199, 636, 778, 782, 869
DrdI	GACNNNNNNGTC	1 cut(s)	155
DseDI	GACNNNNNNGTC	1 cut(s)	155
Eam1104I	CTCTTC	1 cut(s)	689
EarI	CTCTTC	1 cut(s)	689
EciI	GGCGGA	4 cut(s)	92, 152, 349, 354
Eco88I	CYCGRG	2 cut(s)	806, 822
FaeI	CATG	2 cut(s)	63, 557
FaiI	YATR	6 cut(s)	61, 323, 474, 555, 876, 898
FaqI	GGGAC	4 cut(s)	32, 143, 299, 825
FatI	CATG	2 cut(s)	59, 553
FauI	CCCGC	3 cut(s)	169, 521, 741
FbaI	TGATCA	1 cut(s)	199
FblI	GTMKAC	2 cut(s)	207, 558
Fnu4HI	GCNGC	7 cut(s)	290, 391, 394, 489, 521, 583, 615
FokI	GGATG	2 cut(s)	495, 632
Fsp4HI	GCNGC	7 cut(s)	290, 391, 394, 489, 521, 583, 615
GlaI	GCGC	2 cut(s)	249, 370
GluI	GCNGC	7 cut(s)	290, 391, 394, 489, 521, 583, 615
GsuI	CTGGAG	1 cut(s)	588
HaeII	RGCGCY	1 cut(s)	372
HaeIII	GGCC	3 cut(s)	222, 805, 894
HapII	CCGG	5 cut(s)	176, 219, 317, 579, 786
HhaI	GCGC	2 cut(s)	250, 371
Hin1II	CATG	2 cut(s)	63, 557
Hin6I	GCGC	2 cut(s)	248, 369
HinP1I	GCGC	2 cut(s)	248, 369
HincII	GTYRAC	5 cut(s)	22, 181, 208, 403, 433
HindII	GTYRAC	5 cut(s)	22, 181, 208, 403, 433
HindIII	AAGCTT	1 cut(s)	343
HinfI	GANTC	5 cut(s)	32, 260, 280, 686, 845
HpaI	GTTAAC	1 cut(s)	433
HpaII	CCGG	5 cut(s)	176, 219, 317, 579, 786
HphI	GGTGA	4 cut(s)	514, 587, 619, 646
Hpy166II	GTNNAC	7 cut(s)	22, 181, 208, 238, 403, 433, 559
Hpy188I	TCNGA	2 cut(s)	641, 691
Hpy188III	TCNNGA	2 cut(s)	284, 510
Hpy8I	GTNNAC	7 cut(s)	22, 181, 208, 238, 403, 433, 559
Hpy99I	CGWCG	3 cut(s)	116, 209, 605
HpyAV	CCTTC	5 cut(s)	526, 532, 604, 659, 758
HpyCH4III	ACNGT	2 cut(s)	172, 233
HpyCH4IV	ACGT	4 cut(s)	24, 204, 600, 796
HpyCH4V	TGCA	5 cut(s)	411, 523, 668, 878, 902
HpyF10VI	GCNNNNNNNGC	6 cut(s)	368, 582, 611, 620, 826, 884
HpyF3I	CTNAG	1 cut(s)	264
HpySE526I	ACGT	4 cut(s)	24, 204, 600, 796
Hsp92II	CATG	2 cut(s)	63, 557
HspAI	GCGC	2 cut(s)	248, 369
Ksp22I	TGATCA	1 cut(s)	199
KspAI	GTTAAC	1 cut(s)	433
Kzo9I	GATC	5 cut(s)	199, 636, 778, 782, 869
LmnI	GCTCC	1 cut(s)	581
Lsp1109I	GCAGC	3 cut(s)	301, 507, 626
MaeII	ACGT	4 cut(s)	24, 204, 600, 796
MaeIII	GTNAC	2 cut(s)	718, 792
MalI	GATC	5 cut(s)	201, 638, 780, 784, 871
MbiI	CCGCTC	1 cut(s)	528
MboI	GATC	5 cut(s)	199, 636, 778, 782, 869
MboII	GAAGA	2 cut(s)	706, 782
MfeI	CAATTG	1 cut(s)	888
MhlI	GDGCHC	1 cut(s)	302
MluCI	AATT	3 cut(s)	76, 834, 888
MlyI	GAGTC	2 cut(s)	269, 854
MroXI	GAANNNNTTC	1 cut(s)	713
MseI	TTAA	2 cut(s)	432, 910
MspI	CCGG	5 cut(s)	176, 219, 317, 579, 786
MspR9I	CCNGG	1 cut(s)	317
MunI	CAATTG	1 cut(s)	888
MvnI	CGCG	3 cut(s)	129, 605, 735
MwoI	GCNNNNNNNGC	6 cut(s)	368, 582, 611, 620, 826, 884
NciI	CCSGG	1 cut(s)	317
NdeII	GATC	5 cut(s)	199, 636, 778, 782, 869
NlaIII	CATG	2 cut(s)	63, 557
NmuCI	GTSAC	1 cut(s)	792
PaeR7I	CTCGAG	1 cut(s)	822
PdmI	GAANNNNTTC	1 cut(s)	713
PfeI	GAWTC	3 cut(s)	32, 280, 686
PkrI	GCNGC	7 cut(s)	291, 392, 395, 490, 522, 584, 616
PleI	GAGTC	2 cut(s)	268, 853
PpsI	GAGTC	2 cut(s)	268, 853
PspPI	GGNCC	1 cut(s)	804
PspXI	VCTCGAGB	1 cut(s)	822
PstI	CTGCAG	1 cut(s)	525
RsaI	GTAC	3 cut(s)	66, 713, 743
RsaNI	GTAC	3 cut(s)	65, 712, 742
SalI	GTCGAC	1 cut(s)	206
SaqAI	TTAA	2 cut(s)	432, 910
SatI	GCNGC	7 cut(s)	290, 391, 394, 489, 521, 583, 615
Sau3AI	GATC	5 cut(s)	199, 636, 778, 782, 869
Sau96I	GGNCC	1 cut(s)	804
ScaI	AGTACT	1 cut(s)	713
SchI	GAGTC	2 cut(s)	269, 854
ScrFI	CCNGG	1 cut(s)	317
SduI	GDGCHC	1 cut(s)	302
SfcI	CTRYAG	1 cut(s)	521
Sfr274I	CTCGAG	1 cut(s)	822
SlaI	CTCGAG	1 cut(s)	822
SmlI	CTYRAG	4 cut(s)	284, 295, 494, 822
SmoI	CTYRAG	4 cut(s)	284, 295, 494, 822
Sse9I	AATT	3 cut(s)	76, 834, 888
StyD4I	CCNGG	1 cut(s)	315
TaaI	ACNGT	2 cut(s)	172, 233
TaiI	ACGT	4 cut(s)	27, 207, 603, 799
TaqI	TCGA	6 cut(s)	147, 207, 509, 781, 823, 868
TaqII	GACCGA	1 cut(s)	165
TasI	AATT	3 cut(s)	76, 834, 888
TatI	WGTACW	1 cut(s)	711
TauI	GCSGC	4 cut(s)	393, 396, 491, 585
TfiI	GAWTC	3 cut(s)	32, 280, 686
Tru1I	TTAA	2 cut(s)	432, 910
Tru9I	TTAA	2 cut(s)	432, 910
TscAI	CASTG	1 cut(s)	272
TseFI	GTSAC	1 cut(s)	792
TseI	GCWGC	3 cut(s)	289, 520, 614
Tsp45I	GTSAC	1 cut(s)	792
TspDTI	ATGAA	3 cut(s)	30, 45, 542
TspGWI	ACGGA	4 cut(s)	129, 418, 495, 698
TspRI	CASTG	1 cut(s)	272
XapI	RAATTY	1 cut(s)	834
XcmI	CCANNNNNNNNNTGG	1 cut(s)	82
XhoI	CTCGAG	1 cut(s)	822
XmiI	GTMKAC	2 cut(s)	207, 558
XmnI	GAANNNNTTC	1 cut(s)	713
ZrmI	AGTACT	1 cut(s)	713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.