Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0005477

Physical Location & Seq

Genomic Coordinates Reverse (-)

28738630 .. 28745864

Gene Structure 7235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g26100.15

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3369 bp

ATGGAGGAGCCACCGTCAGCCACCGCGGCGGAACCGTCGACGACTGTCCTCCGCAAGAGGACTAGGGGTCGGACTCAGACCACTGAGAACCCTGAGAGGACCACCGCCGGGAGCGACCAGGAGGAGCGCGAGAGCTCACCCGATGACTTCAAAGAAGCTCGTCCTAGAGCTAAACGAGGTCGACCTGCCGCTGCTGCTGCCGCTGGCCCTTCCGCCGCCGCACCGCAGAAACTCGCCGGCCTCACCTTGATTGAGGTCATCAAGGGCAATGGGAAACTTATCCCTCAAGCAGTCAAGCTTTGGGTTGAGCGATATGAAAAGGATCCAAAACCTGCTATGGTTGAACTTTTGATGATGCTGTTTGAGGCATGTGGGGCCAAGTATCAATTCAAAGGAGAGTTGCTGGACGAGATTGATGTTGATGATGTTGTGGTTGCTCTAGTTGAGCTTGCTAGAAGTGGTAATGTTGAAGATTACCAAAGTTCGAAAAAGAAGGAATTTAAGAACTTCAAAGAAAATCTTCAATCTTTCTGGGATAATTTGGTCCGTGAATGTCAACATGGGCCATTGGTTGATCAGATCTTGTTCGAGAAATGCATGGATTATATAATTGCTTTGTCATGCACTCCTCCAAGAGTTTATCGTCAAGCTGCTACTTTGACGGGTCTCCAGCTTGTCACATCGTTTATATCTGTTGCTAACACCCTTGGTGCTCAGCGAGAAACTACTCGTAGACAATTAGATGCTGAAAAAAAGAAACAAACTGAGGGGCCTCGTGTGGAATCACTGAACAAGAGGTTTTCAATGACTCATGACAAGATAACTATACTAGAACAGATGATGCGCAAGATATTTCAAGGGTTATTTGTGCATCGCTATCGAGACATTGATCCAAATATTCGGATGTCTTGCATAGAGTCACTAGGCGTGTGGATTCTTTCCTATCCATCACTGTTCTTGCAGGATTTATACCTGAAGTATCTTGGCTGGACACTAAATGACAAAAGTGCTGGTGTAAGAAAAGCTTCCGTCCTTGCATTGCAAAATCTTTATGAGGTTGATGATAATGTGCCAACTCTTGGTCTATTCACCGAAAGATTTTCTAGTCGGATGATTGATCTTGCTGATGACATCGACATTTCTGTGGCTGTATGTGCAATTGGCCTTGTTAAACAACTACTAAGACACCAGCTTCTACAAGATGATGATTTGATTCCTTTATATGATCTGCTTATCGATAACCTACCAGAGATCAGGCATGCTATAGGGGCATTAGTGTATGAACACTTGATTTCTCAGAAGTTTAATAGCTCCCAATCTGGTGCAAAAGGAGATGGCAGCAATTCTTCTGAGGTCCATCTTGGGAGAATGTTGAAAATTCTAAATGAGTTCTCTGCCGATCCAATTCTAAGCATCTATGTCATTGATGATGTTTGGGAGTACATGAAGGCAATGAAGGATTGGAAGTGTATTATCTCCATGCTTTTGAATGAGAATCCATTGATCGAGCTTACTGAGGAGGATGCAACAAACTTGGTACGACTTCTTTGTTCATCTGTCAAAAAGGCCGTGGGAGAGAGGATTGTTCCTGCCACCGATAACCGAAAGCCACATTACAGTAAAGCTCAAAAAGATGTATTTGAACACAACAGACGAGATATAACTCTTGCCATGATGAAGAATTACCCATTACTTCTACGGAAGTTCATGGCTGACAAAACAAAAGTACCATCACTGATTGAAATTATCGTGCACATGAATCTTGAGCTATATTCCCTGAAGAGGCAGGAGCAGAACTTCAAAACTGTCCTTCAACTCATCAAGGAGGCATTTTTTAAACATGGTGAGAGGGAGGCACTGAGATCTTGCGTAAATGCTATCAACCTTTGTTCCACGGAGAGTCAAGGGGAGCTAAAAGATTTTGCTCGTAATACACTAAAGGAACTTCAGGATGAGCTTATTGCCAAGCTTAAATCTGCAATGAAAGAAGTGGCGGATGGTGGTGATGAATATCCTCTTCTGGTGAATTTGAAAAGGTTGTATGAGCTTCAATTAACAAGAGCTGTTTCTACTGATACCTTGTATGAAGATCTTGTCTCAACTCTTCAGAGTCATACAAGCAGGGACCATGAGGTTATCAGTTTTCTGCTTCTCAACATGTCTCTGCATTTGGAATGGTCTCTGCAGTCAATCATCACTAGTGAGACTGTCTCTGAAGCATCTTTGTCTTCTCTATTGGTGAAACGCAATTCCTTGTCTCAGCAACTAGAGTACTTTCTTAACAGCCCTCCTGAATTGGAGGGTAATCCTGCTAATCAGCTAGCTTGTAGGGTTTGTATTCTGCTATCAGAGTTGTGGTTTATGTTTAGAAAGACACTTTTTGCTTCAACAAATCTGGAAAGGTTGGGATATCATCCAGATGCATCCATTCTTAAAAAATTTTGGAACCTATGTGTGCAACAGCTCAGTATTTCAGATGAGACAGAAGATGAATATGCGAACCGAGAATATATTGAGGAGGCAAACAGAGAAGCAGTAATTATTGCTGCTGCAAAGTTGGTTGCTAACGATGTAGGTTCTAAGGAATATCTTGGTCCGGAGATTATCTCTCGATTTTTGATACATGGAACATCTGTAGCAGAGATTGTTAAGAATCTCATTACTTGTCTAAAGAAGAAAGATGATGATCTTCCCAAAATTTTCTTCGAGGCGCTGAAAAAGGCCTACCAGCGGTACGTGGTTCAACTTTCTGAGAGTGATGATGAATCTTCAGCAAGCAAGTGTTTTCAAGAATGTAAAGAATTGGCTGCTCGGATTTCTGGGATGTTTATAGGTGCTGCCAGGAACAAGCACAGATCAAACATTCTAAAAATTGTTAGTGATGGTATAGAATATGCATTTCTAGATGCGCCGAAGCAGTTATCTTTTCTGGAAGGTGCTGTGATCCATTTCGTATCCAAATTGCCAACATCTGATATCCTGGACATTGTGAAGGATGTCCAGAGCAGAACAGAAAATGTAAATACGGATGAAGATCCCAGTGGCTGGCGCCCCTATCACACGTTTGTTGACAACTTGCTTGAGAAATATGCAAAGAATGAAGGTATCCAAGATGAACAGGATGCCCCCTCTGTAAAGCGCAGGGGTCGCCCACGCAAAAAGCGTCGGGGAAAGGGACTCTTTGATGAGCAGAGTTCGAGTGAAGAAGAGGATTTAATAAGCGCATCGGACCATGAAAATGCTCAAGAGGAAGAAAACAAGCAAGACGACGAGGATGACGATGAAGATGCTCCGTTGATACAGTCATTTAGGTCATCGGCCAAGTTGAGGGCATTGAGAGTTGCAAGAGCGGAAACGAAGGCCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007127 GO:0007135 GO:0008150 GO:0008608 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464 GO:0045132 GO:0045143 GO:0045144 GO:0048285 GO:0051177 GO:0051276 GO:0051316 GO:0051321 GO:0051455 GO:0051754 GO:0061982 GO:0061983 GO:0070192 GO:0070601 GO:0071840 GO:0098813 GO:0140013 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

STAG

Protein Analysis

1123

Amino Acids

127.26

Weight (kDa)

5.58

Isoelectric Point (pI)

47.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47980
fragaria_vesca	FvH4_2g24570 FvH4_2g24570 FvH4_2g24570 FvH4_2g24570 FvH4_2g24570 FvH4_2g24570
malus_domestica	MD11G1296700.v1.1
prunus_persica	Prupe.8G250900_v2.0.a1 Prupe.8G250900_v2.0.a1 Prupe.8G250900_v2.0.a1 Prupe.8G250900_v2.0.a1 Prupe.8G250900_v2.0.a1 Prupe.8G250900_v2.0.a1
pyrus_communis	pycom11g26100
rosa_chinensis	RchiOBHm_Chr6g0292391
rosa_laevigata	RLG00000012032
rosa_multiflora	Rmu_sc0012226.1_g000001 Rmu_sc0023540.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026580 Rroxscaffold_7G00175100
rosa_rugosa	Rorug06G0226100 Rorug06G0226200 Rorug06G0226300
rosa_samantha	Rh6AG339600 Rh6BG346800 Rh6CG353600 Rh6DG339600
rosa_wichuraiana	Rw6G029550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	845
Acc36I	ACCTGC	2 cut(s)	193, 340
AccB1I	GGYRCC	1 cut(s)	3048
AccB7I	CCANNNNNTGG	2 cut(s)	1079, 3045
AccBSI	CCGCTC	1 cut(s)	3350
AccI	GTMKAC	3 cut(s)	38, 181, 733
AccII	CGCG	2 cut(s)	26, 129
AccIII	TCCGGA	1 cut(s)	2596
AclWI	GGATC	6 cut(s)	317, 330, 884, 1394, 2938, 3029
AcoI	YGGCCR	1 cut(s)	3318
AcsI	RAATTY	5 cut(s)	497, 1377, 2026, 2438, 2697
AcuI	CTGAAG	6 cut(s)	995, 1799, 1931, 2090, 2235, 2754
AcyI	GRCGYC	1 cut(s)	3049
AfaI	GTAC	5 cut(s)	1442, 1539, 1728, 2273, 2735
AfiI	CCNNNNNNNGG	6 cut(s)	108, 1079, 1782, 2730, 3045, 3327
AflIII	ACRYGT	2 cut(s)	2157, 3060
AhdI	GACNNNNNGTC	1 cut(s)	66
AhlI	ACTAGT	1 cut(s)	2198
AjnI	CCWGG	3 cut(s)	117, 2840, 2979
AjuI	GAANNNNNNNTTGG	4 cut(s)	371, 403, 2687, 2719
Alw21I	GWGCWC	3 cut(s)	137, 715, 1755
Alw26I	GTCTC	9 cut(s)	671, 876, 2101, 2166, 2184, 2198, 2215, 2262, 2474
Alw44I	GTGCAC	1 cut(s)	1751
AlwI	GGATC	6 cut(s)	317, 330, 884, 1394, 2938, 3029
AlwNI	CAGNNNCTG	1 cut(s)	3045
Aor13HI	TCCGGA	1 cut(s)	2596
ApaLI	GTGCAC	1 cut(s)	1751
ApeKI	GCWGC	9 cut(s)	191, 194, 197, 650, 1338, 2546, 2549, 2807, 2837
ApoI	RAATTY	5 cut(s)	497, 1377, 2026, 2438, 2697
Asp700I	GAANNNNTTC	2 cut(s)	519, 1024
AspLEI	GCGC	7 cut(s)	129, 846, 2713, 2911, 3051, 3141, 3224
AsuC2I	CCSGG	1 cut(s)	109
AsuHPI	GGTGA	7 cut(s)	129, 235, 1081, 1856, 2015, 2035, 2251
AsuII	TTCGAA	1 cut(s)	485
AsuNHI	GCTAGC	1 cut(s)	2320
AvaII	GGWCC	6 cut(s)	99, 544, 1354, 2125, 2594, 3229
BaeGI	GKGCMC	1 cut(s)	1755
BaeI	ACNNNNGTAYC	2 cut(s)	1710, 1743
BamHI	GGATCC	1 cut(s)	322
BanI	GGYRCC	1 cut(s)	3048
BanII	GRGCYC	1 cut(s)	137
BauI	CACGAG	1 cut(s)	774
BbsI	GAAGAC	1 cut(s)	2220
Bbv12I	GWGCWC	3 cut(s)	137, 715, 1755
BbvI	GCAGC	9 cut(s)	178, 181, 184, 637, 1350, 2533, 2536, 2794, 2824
BccI	CCATC	6 cut(s)	955, 1328, 1365, 1738, 1991, 2876
BceAI	ACGGC	1 cut(s)	1553
BcgI	CGANNNNNNTGC	4 cut(s)	860, 894, 3269, 3303
BciT130I	CCWGG	3 cut(s)	119, 2842, 2981
BciVI	GTATCC	2 cut(s)	2965, 3116
BclI	TGATCA	1 cut(s)	574
BcnI	CCSGG	1 cut(s)	109
BcoDI	GTCTC	9 cut(s)	671, 876, 2101, 2166, 2184, 2198, 2215, 2262, 2474
BcuI	ACTAGT	1 cut(s)	2198
BfmI	CTRYAG	3 cut(s)	1263, 2183, 2634
BfoI	RGCGCY	2 cut(s)	2714, 3052
BfuAI	ACCTGC	2 cut(s)	193, 340
BfuI	GTATCC	2 cut(s)	2965, 3116
BglI	GCCNNNNNGGC	1 cut(s)	26
BglII	AGATCT	3 cut(s)	579, 1862, 2089
BlpI	GCTNAGC	1 cut(s)	714
BmcAI	AGTACT	1 cut(s)	2273
Bme1390I	CCNGG	4 cut(s)	109, 119, 2842, 2981
Bme18I	GGWCC	6 cut(s)	99, 544, 1354, 2125, 2594, 3229
BmeRI	GACNNNNNGTC	1 cut(s)	66
BmiI	GGNNCC	8 cut(s)	9, 33, 324, 376, 771, 2126, 2447, 3050
BmrFI	CCNGG	4 cut(s)	109, 119, 2842, 2981
BmrI	ACTGGG	1 cut(s)	3033
BmtI	GCTAGC	1 cut(s)	2324
BmuI	ACTGGG	1 cut(s)	3033
BoxI	GACNNNNGTC	1 cut(s)	44
BpiI	GAAGAC	1 cut(s)	2220
BplI	GAGNNNNNCTC	4 cut(s)	2195, 2227, 2591, 2623
BpmI	CTGGAG	1 cut(s)	653
Bpu1102I	GCTNAGC	1 cut(s)	714
Bpu14I	TTCGAA	1 cut(s)	485
BpuEI	CTTGAG	4 cut(s)	270, 1784, 3101, 3228
BpuMI	CCSGG	1 cut(s)	109
Bsa29I	ATCGAT	1 cut(s)	1236
BsaAI	YACGTR	1 cut(s)	2737
BsaBI	GATNNNNATC	3 cut(s)	2010, 2685, 3033
BsaHI	GRCGYC	1 cut(s)	3049
BsaI	GGTCTC	2 cut(s)	671, 2184
BsaJI	CCNNGG	4 cut(s)	24, 706, 1569, 1893
BsaWI	WCCGGW	1 cut(s)	2596
BsaXI	ACNNNNNCTCC	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	6 cut(s)	108, 1079, 1782, 2730, 3045, 3327
Bse118I	RCCGGY	1 cut(s)	236
Bse1I	ACTGG	1 cut(s)	3039
Bse3DI	GCAATG	4 cut(s)	274, 1037, 1458, 1986
Bse8I	GATNNNNATC	3 cut(s)	2010, 2685, 3033
BseAI	TCCGGA	1 cut(s)	2596
BseBI	CCWGG	3 cut(s)	119, 2842, 2981
BseCI	ATCGAT	1 cut(s)	1236
BseDI	CCNNGG	4 cut(s)	24, 706, 1569, 1893
BseJI	GATNNNNATC	3 cut(s)	2010, 2685, 3033
BseLI	CCNNNNNNNGG	6 cut(s)	108, 1079, 1782, 2730, 3045, 3327
BseMI	GCAATG	4 cut(s)	274, 1037, 1458, 1986
BseNI	ACTGG	1 cut(s)	3039
BseRI	GAGGAG	5 cut(s)	20, 137, 618, 1532, 2531
BseSI	GKGCMC	1 cut(s)	1755
BseXI	GCAGC	9 cut(s)	178, 181, 184, 637, 1350, 2533, 2536, 2794, 2824
Bsh1236I	CGCG	2 cut(s)	26, 129
BshNI	GGYRCC	1 cut(s)	3048
BshVI	ATCGAT	1 cut(s)	1236
BsiHKAI	GWGCWC	3 cut(s)	137, 715, 1755
BsiSI	CCGG	3 cut(s)	108, 237, 2597
BslFI	GGGAC	2 cut(s)	2138, 3189
BslI	CCNNNNNNNGG	6 cut(s)	108, 1079, 1782, 2730, 3045, 3327
BsmAI	GTCTC	9 cut(s)	671, 876, 2101, 2166, 2184, 2198, 2215, 2262, 2474
BsmFI	GGGAC	2 cut(s)	2138, 3189
Bso31I	GGTCTC	2 cut(s)	671, 2184
Bsp119I	TTCGAA	1 cut(s)	485
Bsp1286I	GDGCHC	3 cut(s)	137, 715, 1755
Bsp13I	TCCGGA	1 cut(s)	2596
Bsp1720I	GCTNAGC	1 cut(s)	714
BspDI	ATCGAT	1 cut(s)	1236
BspEI	TCCGGA	1 cut(s)	2596
BspFNI	CGCG	2 cut(s)	26, 129
BspHI	TCATGA	1 cut(s)	811
BspLI	GGNNCC	8 cut(s)	9, 33, 324, 376, 771, 2126, 2447, 3050
BspMAI	CTGCAG	1 cut(s)	2187
BspMI	ACCTGC	2 cut(s)	193, 340
BspOI	GCTAGC	1 cut(s)	2324
BspPI	GGATC	6 cut(s)	317, 330, 884, 1394, 2938, 3029
BspT104I	TTCGAA	1 cut(s)	485
BspT107I	GGYRCC	1 cut(s)	3048
BspTNI	GGTCTC	2 cut(s)	671, 2184
BsrBI	CCGCTC	1 cut(s)	3350
BsrDI	GCAATG	4 cut(s)	274, 1037, 1458, 1986
BsrFI	RCCGGY	1 cut(s)	236
BsrI	ACTGG	1 cut(s)	3039
BssAI	RCCGGY	1 cut(s)	236
BssECI	CCNNGG	4 cut(s)	24, 706, 1569, 1893
BssNI	GRCGYC	1 cut(s)	3049
BssSI	CACGAG	1 cut(s)	774
BssT1I	CCWWGG	1 cut(s)	706
Bst2BI	CACGAG	1 cut(s)	774
Bst2UI	CCWGG	3 cut(s)	119, 2842, 2981
Bst4CI	ACNGT	8 cut(s)	15, 36, 46, 954, 1619, 1807, 2209, 3303
Bst6I	CTCTTC	4 cut(s)	1775, 2022, 2109, 3201
BstACI	GRCGYC	1 cut(s)	3049
BstBAI	YACGTR	1 cut(s)	2737
BstBI	TTCGAA	1 cut(s)	485
BstC8I	GCNNGC	7 cut(s)	205, 238, 450, 1260, 2322, 2776, 3047
BstDSI	CCRYGG	3 cut(s)	24, 1569, 1893
BstFNI	CGCG	2 cut(s)	26, 129
BstH2I	RGCGCY	2 cut(s)	2714, 3052
BstHHI	GCGC	7 cut(s)	129, 846, 2713, 2911, 3051, 3141, 3224
BstMAI	GTCTC	9 cut(s)	671, 876, 2101, 2166, 2184, 2198, 2215, 2262, 2474
BstMWI	GCNNNNNNNGC	8 cut(s)	26, 194, 197, 200, 374, 1154, 1268, 3147
BstNI	CCWGG	3 cut(s)	119, 2842, 2981
BstNSI	RCATGY	3 cut(s)	372, 1262, 2161
BstPAI	GACNNNNGTC	1 cut(s)	44
BstSCI	CCNGG	4 cut(s)	107, 117, 2840, 2979
BstSFI	CTRYAG	3 cut(s)	1263, 2183, 2634
BstSLI	GKGCMC	1 cut(s)	1755
BstUI	CGCG	2 cut(s)	26, 129
BstV1I	GCAGC	9 cut(s)	178, 181, 184, 637, 1350, 2533, 2536, 2794, 2824
BstV2I	GAAGAC	1 cut(s)	2220
BstX2I	RGATCY	5 cut(s)	322, 579, 1862, 2089, 3034
BstYI	RGATCY	5 cut(s)	322, 579, 1862, 2089, 3034
Bsu15I	ATCGAT	1 cut(s)	1236
BsuI	GTATCC	2 cut(s)	2965, 3116
BsuTUI	ATCGAT	1 cut(s)	1236
BtgI	CCRYGG	3 cut(s)	24, 1569, 1893
BtgZI	GCGATG	1 cut(s)	857
BtsIMutI	CAGTG	6 cut(s)	81, 785, 950, 1733, 1856, 3046
BveI	ACCTGC	2 cut(s)	193, 340
Cac8I	GCNNGC	7 cut(s)	205, 238, 450, 1260, 2322, 2776, 3047
CaiI	CAGNNNCTG	1 cut(s)	3045
CciI	TCATGA	1 cut(s)	811
CfoI	GCGC	7 cut(s)	129, 846, 2713, 2911, 3051, 3141, 3224
Cfr10I	RCCGGY	1 cut(s)	236
Cfr42I	CCGCGG	1 cut(s)	27
ClaI	ATCGAT	1 cut(s)	1236
CseI	GACGC	1 cut(s)	3152
Csp6I	GTAC	5 cut(s)	1441, 1538, 1727, 2272, 2734
CviQI	GTAC	5 cut(s)	1441, 1538, 1727, 2272, 2734
DinI	GGCGCC	1 cut(s)	3050
DraI	TTTAAA	1 cut(s)	1837
DriI	GACNNNNNGTC	1 cut(s)	66
EaeI	YGGCCR	1 cut(s)	3318
Eam1104I	CTCTTC	4 cut(s)	1775, 2022, 2109, 3201
Eam1105I	GACNNNNNGTC	1 cut(s)	66
EarI	CTCTTC	4 cut(s)	1775, 2022, 2109, 3201
EciI	GGCGGA	3 cut(s)	44, 202, 2009
Ecl136II	GAGCTC	1 cut(s)	135
Eco130I	CCWWGG	1 cut(s)	706
Eco147I	AGGCCT	1 cut(s)	2723
Eco24I	GRGCYC	1 cut(s)	137
Eco31I	GGTCTC	2 cut(s)	671, 2184
Eco32I	GATATC	2 cut(s)	2411, 2977
Eco47I	GGWCC	6 cut(s)	99, 544, 1354, 2125, 2594, 3229
Eco53kI	GAGCTC	1 cut(s)	135
Eco57I	CTGAAG	6 cut(s)	995, 1799, 1931, 2090, 2235, 2754
EcoICRI	GAGCTC	1 cut(s)	135
EcoO109I	RGGNCCY	1 cut(s)	770
EcoRII	CCWGG	3 cut(s)	117, 2840, 2979
EcoRV	GATATC	2 cut(s)	2411, 2977
EcoT14I	CCWWGG	1 cut(s)	706
EcoT22I	ATGCAT	3 cut(s)	599, 2425, 2899
EcoT38I	GRGCYC	1 cut(s)	137
EgeI	GGCGCC	1 cut(s)	3050
EheI	GGCGCC	1 cut(s)	3050
ErhI	CCWWGG	1 cut(s)	706
FalI	AAGNNNNNCTT	6 cut(s)	504, 536, 1009, 1041, 3164, 3196
FaqI	GGGAC	2 cut(s)	2138, 3189
FbaI	TGATCA	1 cut(s)	574
FblI	GTMKAC	3 cut(s)	38, 181, 733
FriOI	GRGCYC	1 cut(s)	137
FspI	TGCGCA	1 cut(s)	845
GlaI	GCGC	7 cut(s)	128, 845, 2712, 2910, 3050, 3140, 3223
GsuI	CTGGAG	1 cut(s)	653
HaeII	RGCGCY	2 cut(s)	2714, 3052
HapII	CCGG	3 cut(s)	108, 237, 2597
HgaI	GACGC	1 cut(s)	3152
HhaI	GCGC	7 cut(s)	129, 846, 2713, 2911, 3051, 3141, 3224
Hin1I	GRCGYC	1 cut(s)	3049
Hin6I	GCGC	7 cut(s)	127, 844, 2711, 2909, 3049, 3139, 3222
HinP1I	GCGC	7 cut(s)	127, 844, 2711, 2909, 3049, 3139, 3222
HincII	GTYRAC	4 cut(s)	39, 182, 557, 3070
HindII	GTYRAC	4 cut(s)	39, 182, 557, 3070
HindIII	AAGCTT	3 cut(s)	296, 1023, 1967
HpaII	CCGG	3 cut(s)	108, 237, 2597
HphI	GGTGA	7 cut(s)	129, 235, 1081, 1856, 2015, 2035, 2251
Hpy166II	GTNNAC	6 cut(s)	39, 182, 557, 734, 1753, 3070
Hpy8I	GTNNAC	6 cut(s)	39, 182, 557, 734, 1753, 3070
Hpy99I	CGWCG	4 cut(s)	40, 43, 3168, 3272
HpyAV	CCTTC	9 cut(s)	219, 487, 1441, 1450, 1820, 2927, 2986, 3095, 3352
HpyCH4III	ACNGT	8 cut(s)	15, 36, 46, 954, 1619, 1807, 2209, 3303
HpyCH4IV	ACGT	2 cut(s)	2736, 3062
HpyF10VI	GCNNNNNNNGC	8 cut(s)	26, 194, 197, 200, 374, 1154, 1268, 3147
HpySE526I	ACGT	2 cut(s)	2736, 3062
Hsp92I	GRCGYC	1 cut(s)	3049
HspAI	GCGC	7 cut(s)	127, 844, 2711, 2909, 3049, 3139, 3222
KasI	GGCGCC	1 cut(s)	3048
Kpn2I	TCCGGA	1 cut(s)	2596
KroI	GCCGGC	1 cut(s)	236
KroNI	GCCGGC	1 cut(s)	238
Ksp22I	TGATCA	1 cut(s)	574
KspI	CCGCGG	1 cut(s)	27
LmnI	GCTCC	7 cut(s)	7, 111, 124, 1316, 1789, 1909, 3295
Lsp1109I	GCAGC	9 cut(s)	178, 181, 184, 637, 1350, 2533, 2536, 2794, 2824
MaeII	ACGT	2 cut(s)	2736, 3062
MaeIII	GTNAC	2 cut(s)	676, 918
MbiI	CCGCTC	1 cut(s)	3350
MfeI	CAATTG	1 cut(s)	1158
MflI	RGATCY	5 cut(s)	322, 579, 1862, 2089, 3034
MhlI	GDGCHC	3 cut(s)	137, 715, 1755
Mly113I	GGCGCC	1 cut(s)	3049
MlyI	GAGTC	6 cut(s)	67, 802, 926, 1909, 2119, 3171
MmeI	TCCRAC	2 cut(s)	50, 1088
Mph1103I	ATGCAT	3 cut(s)	599, 2425, 2899
MroI	TCCGGA	1 cut(s)	2596
MroNI	GCCGGC	1 cut(s)	236
MroXI	GAANNNNTTC	2 cut(s)	519, 1024
MslI	CAYNNNNRTG	3 cut(s)	1142, 2418, 3237
MspA1I	CMGCKG	4 cut(s)	26, 191, 203, 2731
MspI	CCGG	3 cut(s)	108, 237, 2597
MspR9I	CCNGG	4 cut(s)	109, 119, 2842, 2981
MunI	CAATTG	1 cut(s)	1158
MvaI	CCWGG	3 cut(s)	119, 2842, 2981
MvnI	CGCG	2 cut(s)	26, 129
MwoI	GCNNNNNNNGC	8 cut(s)	26, 194, 197, 200, 374, 1154, 1268, 3147
NaeI	GCCGGC	1 cut(s)	238
NarI	GGCGCC	1 cut(s)	3049
NciI	CCSGG	1 cut(s)	109
NgoMIV	GCCGGC	1 cut(s)	236
NheI	GCTAGC	1 cut(s)	2320
NlaIV	GGNNCC	8 cut(s)	9, 33, 324, 376, 771, 2126, 2447, 3050
NmuCI	GTSAC	2 cut(s)	676, 918
NsbI	TGCGCA	1 cut(s)	845
NsiI	ATGCAT	3 cut(s)	599, 2425, 2899
NspI	RCATGY	3 cut(s)	372, 1262, 2161
NspV	TTCGAA	1 cut(s)	485
PaeI	GCATGC	1 cut(s)	1262
PagI	TCATGA	1 cut(s)	811
PceI	AGGCCT	1 cut(s)	2723
PciI	ACATGT	1 cut(s)	2157
PcsI	WCGNNNNNNNCGW	2 cut(s)	3160, 3276
PdiI	GCCGGC	1 cut(s)	238
PdmI	GAANNNNTTC	2 cut(s)	519, 1024
PfeI	GAWTC	7 cut(s)	782, 934, 1213, 1495, 1759, 2653, 2765
PflMI	CCANNNNNTGG	2 cut(s)	1079, 3045
PfoI	TCCNGGA	1 cut(s)	2979
PleI	GAGTC	6 cut(s)	67, 802, 925, 1908, 2118, 3171
PluTI	GGCGCC	1 cut(s)	3052
PpsI	GAGTC	6 cut(s)	67, 802, 925, 1908, 2118, 3171
Ppu21I	YACGTR	1 cut(s)	2737
PscI	ACATGT	1 cut(s)	2157
PshAI	GACNNNNGTC	1 cut(s)	44
Psp124BI	GAGCTC	1 cut(s)	137
Psp6I	CCWGG	3 cut(s)	117, 2840, 2979
PspGI	CCWGG	3 cut(s)	117, 2840, 2979
PspN4I	GGNNCC	8 cut(s)	9, 33, 324, 376, 771, 2126, 2447, 3050
PstI	CTGCAG	1 cut(s)	2187
PstNI	CAGNNNCTG	1 cut(s)	3045
PsuI	RGATCY	5 cut(s)	322, 579, 1862, 2089, 3034
RsaI	GTAC	5 cut(s)	1442, 1539, 1728, 2273, 2735
RsaNI	GTAC	5 cut(s)	1441, 1538, 1727, 2272, 2734
RseI	CAYNNNNRTG	3 cut(s)	1142, 2418, 3237
SacI	GAGCTC	1 cut(s)	137
SacII	CCGCGG	1 cut(s)	27
SalI	GTCGAC	2 cut(s)	37, 180
ScaI	AGTACT	1 cut(s)	2273
SchI	GAGTC	6 cut(s)	67, 802, 926, 1909, 2119, 3171
ScrFI	CCNGG	4 cut(s)	109, 119, 2842, 2981
SduI	GDGCHC	3 cut(s)	137, 715, 1755
SfcI	CTRYAG	3 cut(s)	1263, 2183, 2634
SfoI	GGCGCC	1 cut(s)	3050
Sfr303I	CCGCGG	1 cut(s)	27
SfuI	TTCGAA	1 cut(s)	485
SgrBI	CCGCGG	1 cut(s)	27
SgrDI	CGTCGACG	1 cut(s)	37
SinI	GGWCC	6 cut(s)	99, 544, 1354, 2125, 2594, 3229
SmiMI	CAYNNNNRTG	3 cut(s)	1142, 2418, 3237
SmlI	CTYRAG	4 cut(s)	285, 1763, 3080, 3243
SmoI	CTYRAG	4 cut(s)	285, 1763, 3080, 3243
SpeI	ACTAGT	1 cut(s)	2198
SphI	GCATGC	1 cut(s)	1262
SseBI	AGGCCT	1 cut(s)	2723
SspDI	GGCGCC	1 cut(s)	3048
SspI	AATATT	1 cut(s)	898
SstI	GAGCTC	1 cut(s)	137
StuI	AGGCCT	1 cut(s)	2723
StyD4I	CCNGG	4 cut(s)	107, 117, 2840, 2979
StyI	CCWWGG	1 cut(s)	706
TaaI	ACNGT	8 cut(s)	15, 36, 46, 954, 1619, 1807, 2209, 3303
TaiI	ACGT	2 cut(s)	2739, 3065
TatI	WGTACW	2 cut(s)	1440, 2271
TauI	GCSGC	5 cut(s)	29, 191, 203, 218, 221
TfiI	GAWTC	7 cut(s)	782, 934, 1213, 1495, 1759, 2653, 2765
TscAI	CASTG	6 cut(s)	88, 792, 957, 1740, 1863, 3046
TseFI	GTSAC	2 cut(s)	676, 918
TseI	GCWGC	9 cut(s)	191, 194, 197, 650, 1338, 2546, 2549, 2807, 2837
Tsp45I	GTSAC	2 cut(s)	676, 918
TspGWI	ACGGA	6 cut(s)	536, 1018, 1714, 1910, 3041, 3282
TspRI	CASTG	6 cut(s)	88, 792, 957, 1740, 1863, 3046
Van91I	CCANNNNNTGG	2 cut(s)	1079, 3045
VneI	GTGCAC	1 cut(s)	1751
VpaK11BI	GGWCC	6 cut(s)	99, 544, 1354, 2125, 2594, 3229
XapI	RAATTY	5 cut(s)	497, 1377, 2026, 2438, 2697
XbaI	TCTAGA	1 cut(s)	2902
XceI	RCATGY	3 cut(s)	372, 1262, 2161
XmiI	GTMKAC	3 cut(s)	38, 181, 733
XmnI	GAANNNNTTC	2 cut(s)	519, 1024
ZrmI	AGTACT	1 cut(s)	2273
Zsp2I	ATGCAT	3 cut(s)	599, 2425, 2899

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.