Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005477

Physical Location & Seq

Genomic Coordinates Reverse (-)

33452376 .. 33461044

Gene Structure 8669 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00026580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2994 bp

ATGAAAAGGCAAGGCGAAGATTTGGCATCGGAAGAGCCAGAAACAAAACGTGTTCGGAGAACAAAAGACCTGAAACTCATTATGAGTATACCCTCTACAAAGTCTGTCATGCTTGACAATGAGTTCGCTAATCTGATTGATGATATAATCAAGGGTAAGCAAGAAATTCTGACTGAGTGGCTTAAGCGGTACCCTTGGTGTAGTGAATCATGTATAACAGAGCTCTTGGTACTTATTATTGAGGCATGCTTGGGTAAGATACCCACCAAAGAAGAATTGCTATGTAATTATAACGTCTTGGAGAAAGACCTGAGTTTGTATATGATTGACAGATCATATCTTTTTGGCACTCCTGTTAGTCAGGTTTTTAGTGTTATGTCAAAGATTGTAGCAGTGGCTCAGTCTCTTGGCAAGGGAGATTTGGTCATCCGCAGACTATCTGACACAGACAAAAAGAAACTTCTAAACTTCTGGGATGAATTGGTTGAAATGTGTAAAACTGATTTATTGTTTAATCAAATCTTGTTTAATAAGTGCATGGATTGTATAATTAGTTTATCATGGTCTAGTACAAGTGTACACCGGGAAACTGCCATTTTGATGGGTCATCAGCTTGTGGAGTCATACATAAAAGTGGCAAAATCCGAATTTGGAGAAATTAGTGAAAGAAAATATGATATTGGAGATGAAATGAATCCTGCGAATTTCTCCATGATTCATAAGATTACTGTTCTAGAAGAAATGATCGAGAAAATGTTTCAAGGGTTATTTCACTCTCGTTTTCGTGAGGACGATCAAAATATTCGGAAGTTTTGTGTTGAGGCATTAGGTAAATGGATTTTGTCCTACCCAAGAAAGTTATTGAAGGATTCACGCTTGGAGTATATTGCATGGACATTGATTGACAAAACTGCCGATGTACGAAAAGCTTCTATCTGCACAATGAAAAATATTTACAAGGATAATCCTGAGCTTCATGCACTCACTGAAGCAATATCTAATAGGATGGGACAGCTTACTAATTACACGAACTTTCCTCTGGGTGTAGGCGTCATTCACCTTATTGTAAAGTTAATAAGACAACGGTCAGATGTTAGCTTGAATTATTTATATGCATTGCTTGTTCATGATCCGGCATGGATGCGGCCTGCTCTAGGGAAACTTGTGTATGAATATTTAATTCGTCAAGGTGATGGAACAAATTCCCCAGAGTTCCTTGTTCGTGGAATACTGAAAATCCTCAAAGAGGTTTCTGGAGACCGCAATTTGGTCATTTATGTCATAGATCTTGTTTGGGAGTACATGGTGGAGATGAAGAACCAAGAAAAGGAAAAGGATGATGGTTCATATTTTTCTAGTATCTGGGACTGTATTGTCTACATGCTTTTGCAAGAGGGCCAATCGACTGAGCATGTGGATAAGCAGGATACAACAAACTTGGTATGGCTTTTGTGTGCATCTGTCAAAAAGACTGTAGGAGAGAGGATTGTTCCTGCTACCGATATTCGAAAGCCAACCTACAACAAACAGGAAACTAAGCTGTTTAAACAGGAGAAACAAGGTGCAACTTTAGTCATAATGAGGAAGTATCCAAAGCTACTAAATTTGTTTATGGACGATATCTTAGTCAACGGAGCAGAACTACAATCACTGATTGAAATCATTCTATACATTGATCCTGGGAAGATGAACCAGGAGAAGGAGTTGGAAAATGTCCCTTTCCTGATAAGAGAGATATTTAATGAACATAATGATAGAGAGGTGCTTAGAGTATGCATCAAAGCTATCGTGCAATGGGGTCCAAATGGTCTAAATTATGCCAGTCAGATATATAATGACCTCCATGCCAAACTGAAATCTCTCGTTACAAAGCTGGAGGTTGATAAGCTTCCTGGAATATTGAAGAGGTTGTATGAGCTTCAATTGTCAATAGATGTGTGTTACCGGAATTTTCAAGACTTTTATAAGGATTTGCTGTTAGCTTTTGATACGTTTGAAGCGAATGAAGAGGTGGTTAGGTTTTGTCTATTAAACATGCTTCTGTGTTTGAAAGCATGGGTGCTTTCATATATTTCTGAAAAGAAAGAGCTGGACGATCTAAGCATGACAAGTGGTTCCTTCTCTACGCTTTTGAAGAGCTTACTACACAGGTCTTTACAATCAAAGGACAGTTTGGGTTCCTTGGTGTGTTTTACACTCAACGAATTTTGGAGTATTCCTTATCCAAGTCATTGGGAACTATCTCCAAATGACTCTGATCTTCAAAGCTATAGGCAACTCTGTTTGCACTGGATAAATAAAGATCCTGTGAGTAACCAGTATGTTGAGGAGACCAGTACAGATGGAGTGCTAGTTGCTGCCATACCTTGGGTCGTTAGTGGTGATATTTCTAAGGCGAAGCAATATTTATGTCCAGAGATATCTCAGCTTGTTGCTCATAATGCAAATATGAGTGAGATTTTAGGACAAGTGACTAAGTTCCTACGAGAAAATGGAGGTCTACCAGCTCAATTGAAGGATATGAGGGCTGAGATTGATAAAGAACTAATCACTGGTCTAAGCAAGGCTAAAGATCGTCCAAAGGTTATCTTGGAAGTATTGAAAGTGGGTTTCCACCAGCATGTGGTTGTCCCTCCTAGAAAAATGGAGCAATCTTTTGTTAACAAGCATCGTCGGAAGTTTGAAGCACTGGCTCCAAAGCTTGATGTGATGTTAGGTCCCTTCATGGAATCAGACATCTCAGAAATTCTTCATGGAGGCATTGAATTTGCTGTTGTAGAAGCACCTGCTGCCCAGAACACTCTTTTTATGAAAGCAGTGCGCTATTTTGTAAGCAATATGTCTACATCTCAAATCCAGAAAATTAAAAACGATGTTCAAGGACGATGGGAGGTGGCATCCAAGAGTACAGATTCTTCTTTCTTGTCTCAACGTCAAACCATTCTTAACAATTGCCTAAAGATGATGGCAGGAAATGAAGGTCTCCAGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007127 GO:0007135 GO:0008150 GO:0008608 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464 GO:0045132 GO:0045143 GO:0045144 GO:0048285 GO:0051177 GO:0051276 GO:0051316 GO:0051321 GO:0051455 GO:0051754 GO:0061982 GO:0061983 GO:0070192 GO:0070601 GO:0071840 GO:0098813 GO:0140013 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

STAG

Protein Analysis

997

Amino Acids

114.55

Weight (kDa)

6.3

Isoelectric Point (pI)

43.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STAG	PF08514	151 - 220	3.3e-07	STAG domain
SCD	PF21581	264 - 328	3.3e-15	Stromalin conservative domain
HEAT_SCC3-SA	PF24571	455 - 683	1.1e-23	Cohesin subunit SCC3/SA, HEAT-repeats domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47980
fragaria_vesca	FvH4_2g24570 FvH4_2g24570 FvH4_2g24570 FvH4_2g24570 FvH4_2g24570 FvH4_2g24570
malus_domestica	MD11G1296700.v1.1
prunus_persica	Prupe.8G250900_v2.0.a1 Prupe.8G250900_v2.0.a1 Prupe.8G250900_v2.0.a1 Prupe.8G250900_v2.0.a1 Prupe.8G250900_v2.0.a1 Prupe.8G250900_v2.0.a1
pyrus_communis	pycom11g26100
rosa_chinensis	RchiOBHm_Chr6g0292391
rosa_laevigata	RLG00000012032
rosa_multiflora	Rmu_sc0012226.1_g000001 Rmu_sc0023540.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026580 Rroxscaffold_7G00175100
rosa_rugosa	Rorug06G0226100 Rorug06G0226200 Rorug06G0226300
rosa_samantha	Rh6AG339600 Rh6BG346800 Rh6CG353600 Rh6DG339600
rosa_wichuraiana	Rw6G029550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	291, 1965
AarI	CACCTGC	1 cut(s)	2794
AasI	GACNNNNNNGTC	1 cut(s)	1373
Acc36I	ACCTGC	1 cut(s)	2794
Acc65I	GGTACC	1 cut(s)	189
AccB1I	GGYRCC	1 cut(s)	189
AccB7I	CCANNNNNTGG	2 cut(s)	2367, 2623
AccI	GTMKAC	4 cut(s)	88, 1377, 2500, 2843
AciI	CCGC	4 cut(s)	187, 430, 1144, 1261
AclWI	GGATC	3 cut(s)	1124, 1670, 2297
AcsI	RAATTY	9 cut(s)	165, 647, 703, 1201, 1603, 1948, 2204, 2745, 2765
AcuI	CTGAAG	1 cut(s)	1008
AcyI	GRCGYC	1 cut(s)	1050
AfaI	GTAC	8 cut(s)	191, 231, 571, 579, 921, 1301, 2338, 2908
AfiI	CCNNNNNNNGG	7 cut(s)	1154, 1246, 1267, 1327, 1699, 2367, 2623
AflII	CTTAAG	1 cut(s)	182
AflIII	ACRYGT	1 cut(s)	49
AjnI	CCWGG	4 cut(s)	1678, 1692, 1891, 2985
Alw21I	GWGCWC	1 cut(s)	225
Alw26I	GTCTC	5 cut(s)	408, 1251, 2324, 2931, 2987
AlwI	GGATC	3 cut(s)	1124, 1670, 2297
AoxI	GGCC	2 cut(s)	1145, 1396
ApeKI	GCWGC	2 cut(s)	2357, 2789
ApoI	RAATTY	9 cut(s)	165, 647, 703, 1201, 1603, 1948, 2204, 2745, 2765
ArsI	GACNNNNNNTTYG	2 cut(s)	107, 139
Asp700I	GAANNNNTTC	4 cut(s)	928, 1201, 1662, 2748
Asp718I	GGTACC	1 cut(s)	189
AspLEI	GCGC	1 cut(s)	2823
AspS9I	GGNCC	3 cut(s)	1396, 1799, 2717
AsuC2I	CCSGG	1 cut(s)	584
AsuHPI	GGTGA	3 cut(s)	1049, 1202, 2393
AsuII	TTCGAA	1 cut(s)	1507
AvaII	GGWCC	2 cut(s)	1799, 2717
BanI	GGYRCC	1 cut(s)	189
BanII	GRGCYC	1 cut(s)	225
BarI	GAAGNNNNNNTAC	2 cut(s)	2899, 2931
Bbv12I	GWGCWC	1 cut(s)	225
BbvI	GCAGC	2 cut(s)	2344, 2776
BccI	CCATC	7 cut(s)	595, 1000, 1187, 1334, 2336, 2880, 2959
BciT130I	CCWGG	4 cut(s)	1680, 1694, 1893, 2987
BciVI	GTATCC	2 cut(s)	1420, 1599
BcnI	CCSGG	1 cut(s)	584
BcoDI	GTCTC	5 cut(s)	408, 1251, 2324, 2931, 2987
BfaI	CTAG	6 cut(s)	567, 734, 1154, 1356, 2351, 2637
BfmI	CTRYAG	2 cut(s)	1473, 2269
BfrI	CTTAAG	1 cut(s)	182
BfuAI	ACCTGC	1 cut(s)	2794
BfuI	GTATCC	2 cut(s)	1420, 1599
BglII	AGATCT	1 cut(s)	1285
BisI	GCNGC	3 cut(s)	1145, 2358, 2790
BlsI	GCNGC	3 cut(s)	1146, 2359, 2791
Bme1390I	CCNGG	5 cut(s)	584, 1680, 1694, 1893, 2987
Bme18I	GGWCC	2 cut(s)	1799, 2717
BmgT120I	GGNCC	3 cut(s)	1396, 1799, 2717
BmiI	GGNNCC	6 cut(s)	191, 1800, 2116, 2179, 2694, 2719
BmrFI	CCNGG	5 cut(s)	584, 1680, 1694, 1893, 2987
BmsI	GCATC	6 cut(s)	35, 1131, 1466, 1785, 2677, 2906
BoxI	GACNNNNGTC	1 cut(s)	1084
BpmI	CTGGAG	3 cut(s)	1275, 1895, 2969
Bpu10I	CCTNAGC	1 cut(s)	969
Bpu14I	TTCGAA	1 cut(s)	1507
BpuMI	CCSGG	1 cut(s)	584
BsaBI	GATNNNNATC	1 cut(s)	1658
BsaHI	GRCGYC	1 cut(s)	1050
BsaI	GGTCTC	3 cut(s)	1251, 2324, 2987
BsaJI	CCNNGG	4 cut(s)	194, 1679, 2181, 2366
BsaWI	WCCGGW	1 cut(s)	1944
BsaXI	ACNNNNNCTCC	6 cut(s)	408, 438, 1688, 1718, 2337, 2367
Bsc4I	CCNNNNNNNGG	7 cut(s)	1154, 1246, 1267, 1327, 1699, 2367, 2623
Bse1I	ACTGG	6 cut(s)	1821, 2294, 2317, 2334, 2557, 2694
Bse3DI	GCAATG	2 cut(s)	1115, 1799
Bse8I	GATNNNNATC	1 cut(s)	1658
BseBI	CCWGG	4 cut(s)	1680, 1694, 1893, 2987
BseDI	CCNNGG	4 cut(s)	194, 1679, 2181, 2366
BseGI	GGATG	6 cut(s)	426, 481, 1011, 1146, 1342, 2897
BseJI	GATNNNNATC	1 cut(s)	1658
BseLI	CCNNNNNNNGG	7 cut(s)	1154, 1246, 1267, 1327, 1699, 2367, 2623
BseMI	GCAATG	2 cut(s)	1115, 1799
BseMII	CTCAG	8 cut(s)	165, 302, 413, 960, 1398, 2438, 2520, 2754
BseNI	ACTGG	6 cut(s)	1821, 2294, 2317, 2334, 2557, 2694
BseRI	GAGGAG	1 cut(s)	2342
BseXI	GCAGC	2 cut(s)	2344, 2776
BsgI	GTGCAG	1 cut(s)	922
BshFI	GGCC	2 cut(s)	1147, 1398
BshNI	GGYRCC	1 cut(s)	189
BsiHKAI	GWGCWC	1 cut(s)	225
BsiSI	CCGG	3 cut(s)	583, 1133, 1945
BslFI	GGGAC	5 cut(s)	1023, 1379, 1700, 2615, 2703
BslI	CCNNNNNNNGG	7 cut(s)	1154, 1246, 1267, 1327, 1699, 2367, 2623
BsmAI	GTCTC	5 cut(s)	408, 1251, 2324, 2931, 2987
BsmFI	GGGAC	5 cut(s)	1023, 1379, 1700, 2615, 2703
BsnI	GGCC	2 cut(s)	1147, 1398
Bso31I	GGTCTC	3 cut(s)	1251, 2324, 2987
Bsp119I	TTCGAA	1 cut(s)	1507
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp1407I	TGTACA	1 cut(s)	577
BspACI	CCGC	4 cut(s)	187, 430, 1144, 1261
BspANI	GGCC	2 cut(s)	1147, 1398
BspCNI	CTCAG	8 cut(s)	166, 303, 412, 961, 1399, 2437, 2521, 2753
BspHI	TCATGA	1 cut(s)	1126
BspLI	GGNNCC	6 cut(s)	191, 1800, 2116, 2179, 2694, 2719
BspMI	ACCTGC	1 cut(s)	2794
BspPI	GGATC	3 cut(s)	1124, 1670, 2297
BspQI	GCTCTTC	2 cut(s)	27, 2129
BspT104I	TTCGAA	1 cut(s)	1507
BspT107I	GGYRCC	1 cut(s)	189
BspTI	CTTAAG	1 cut(s)	182
BspTNI	GGTCTC	3 cut(s)	1251, 2324, 2987
BsrDI	GCAATG	2 cut(s)	1115, 1799
BsrGI	TGTACA	1 cut(s)	577
BsrI	ACTGG	6 cut(s)	1821, 2294, 2317, 2334, 2557, 2694
BssECI	CCNNGG	4 cut(s)	194, 1679, 2181, 2366
BssNAI	GTATAC	1 cut(s)	89
BssNI	GRCGYC	1 cut(s)	1050
BssT1I	CCWWGG	3 cut(s)	194, 2181, 2366
Bst1107I	GTATAC	1 cut(s)	89
Bst2UI	CCWGG	4 cut(s)	1680, 1694, 1893, 2987
Bst4CI	ACNGT	5 cut(s)	730, 1086, 1370, 1474, 2171
Bst6I	CTCTTC	4 cut(s)	27, 1898, 2001, 2129
BstACI	GRCGYC	1 cut(s)	1050
BstAFI	CTTAAG	1 cut(s)	182
BstAPI	GCANNNNNTGC	1 cut(s)	2789
BstAUI	TGTACA	1 cut(s)	577
BstBI	TTCGAA	1 cut(s)	1507
BstC8I	GCNNGC	2 cut(s)	247, 1149
BstENI	CCTNNNNNAGG	2 cut(s)	1152, 1244
BstF5I	GGATG	6 cut(s)	426, 481, 1011, 1146, 1342, 2897
BstHHI	GCGC	1 cut(s)	2823
BstMAI	GTCTC	5 cut(s)	408, 1251, 2324, 2931, 2987
BstMWI	GCNNNNNNNGC	2 cut(s)	2441, 2789
BstNI	CCWGG	4 cut(s)	1680, 1694, 1893, 2987
BstNSI	RCATGY	5 cut(s)	249, 1384, 1415, 2038, 2624
BstPAI	GACNNNNGTC	1 cut(s)	1084
BstSCI	CCNGG	5 cut(s)	582, 1678, 1692, 1891, 2985
BstSFI	CTRYAG	2 cut(s)	1473, 2269
BstV1I	GCAGC	2 cut(s)	2344, 2776
BstX2I	RGATCY	2 cut(s)	1285, 2302
BstXI	CCANNNNNNTGG	2 cut(s)	601, 2232
BstYI	RGATCY	2 cut(s)	1285, 2302
BstZ17I	GTATAC	1 cut(s)	89
BsuI	GTATCC	2 cut(s)	1420, 1599
BsuRI	GGCC	2 cut(s)	1147, 1398
BtsCI	GGATG	6 cut(s)	426, 481, 1011, 1146, 1342, 2897
BtsI	GCAGTG	2 cut(s)	399, 2823
BtsIMutI	CAGTG	7 cut(s)	399, 984, 1649, 2287, 2550, 2687, 2823
BveI	ACCTGC	1 cut(s)	2794
Cac8I	GCNNGC	2 cut(s)	247, 1149
CciI	TCATGA	1 cut(s)	1126
CfoI	GCGC	1 cut(s)	2823
Cfr13I	GGNCC	3 cut(s)	1396, 1799, 2717
CseI	GACGC	1 cut(s)	1039
Csp6I	GTAC	8 cut(s)	190, 230, 570, 578, 920, 1300, 2337, 2907
CviQI	GTAC	8 cut(s)	190, 230, 570, 578, 920, 1300, 2337, 2907
DraI	TTTAAA	1 cut(s)	1546
DrdI	GACNNNNNNGTC	1 cut(s)	1373
DseDI	GACNNNNNNGTC	1 cut(s)	1373
Eam1104I	CTCTTC	4 cut(s)	27, 1898, 2001, 2129
EarI	CTCTTC	4 cut(s)	27, 1898, 2001, 2129
Ecl136II	GAGCTC	1 cut(s)	223
Eco130I	CCWWGG	3 cut(s)	194, 2181, 2366
Eco24I	GRGCYC	1 cut(s)	225
Eco31I	GGTCTC	3 cut(s)	1251, 2324, 2987
Eco32I	GATATC	2 cut(s)	1621, 2421
Eco47I	GGWCC	2 cut(s)	1799, 2717
Eco53kI	GAGCTC	1 cut(s)	223
Eco57I	CTGAAG	1 cut(s)	1008
EcoICRI	GAGCTC	1 cut(s)	223
EcoNI	CCTNNNNNAGG	2 cut(s)	1152, 1244
EcoO109I	RGGNCCY	1 cut(s)	2717
EcoRII	CCWGG	4 cut(s)	1678, 1692, 1891, 2985
EcoRV	GATATC	2 cut(s)	1621, 2421
EcoT14I	CCWWGG	3 cut(s)	194, 2181, 2366
EcoT22I	ATGCAT	2 cut(s)	1117, 1778
EcoT38I	GRGCYC	1 cut(s)	225
ErhI	CCWWGG	3 cut(s)	194, 2181, 2366
FalI	AAGNNNNNCTT	2 cut(s)	2573, 2605
FaqI	GGGAC	5 cut(s)	1023, 1379, 1700, 2615, 2703
FblI	GTMKAC	4 cut(s)	88, 1377, 2500, 2843
Fnu4HI	GCNGC	3 cut(s)	1145, 2358, 2790
FokI	GGATG	6 cut(s)	413, 488, 1018, 1153, 1349, 2884
FriOI	GRGCYC	1 cut(s)	225
Fsp4HI	GCNGC	3 cut(s)	1145, 2358, 2790
FspBI	CTAG	6 cut(s)	567, 734, 1154, 1356, 2351, 2637
GlaI	GCGC	1 cut(s)	2822
GluI	GCNGC	3 cut(s)	1145, 2358, 2790
GsuI	CTGGAG	3 cut(s)	1275, 1895, 2969
HaeIII	GGCC	2 cut(s)	1147, 1398
HapII	CCGG	3 cut(s)	583, 1133, 1945
HgaI	GACGC	1 cut(s)	1039
HhaI	GCGC	1 cut(s)	2823
Hin1I	GRCGYC	1 cut(s)	1050
Hin6I	GCGC	1 cut(s)	2821
HinP1I	GCGC	1 cut(s)	2821
HincII	GTYRAC	2 cut(s)	1630, 2662
HindII	GTYRAC	2 cut(s)	1630, 2662
HindIII	AAGCTT	3 cut(s)	927, 1886, 2699
HinfI	GANTC	8 cut(s)	206, 620, 694, 715, 869, 2252, 2729, 2912
HpaI	GTTAAC	1 cut(s)	2662
HpaII	CCGG	3 cut(s)	583, 1133, 1945
HphI	GGTGA	3 cut(s)	1049, 1202, 2393
Hpy166II	GTNNAC	8 cut(s)	89, 578, 580, 1378, 1630, 2501, 2662, 2844
Hpy8I	GTNNAC	8 cut(s)	89, 578, 580, 1378, 1630, 2501, 2662, 2844
Hpy99I	CGWCG	1 cut(s)	2676
HpyAV	CCTTC	6 cut(s)	859, 1693, 2128, 2509, 2731, 2972
HpyCH4III	ACNGT	5 cut(s)	730, 1086, 1370, 1474, 2171
HpyCH4IV	ACGT	4 cut(s)	49, 294, 1991, 2932
HpyF10VI	GCNNNNNNNGC	2 cut(s)	2441, 2789
HpySE526I	ACGT	4 cut(s)	49, 294, 1991, 2932
Hsp92I	GRCGYC	1 cut(s)	1050
HspAI	GCGC	1 cut(s)	2821
KpnI	GGTACC	1 cut(s)	193
KspAI	GTTAAC	1 cut(s)	2662
LguI	GCTCTTC	2 cut(s)	27, 2129
LmnI	GCTCC	3 cut(s)	1634, 2647, 2698
Lsp1109I	GCAGC	2 cut(s)	2344, 2776
LweI	GCATC	6 cut(s)	35, 1131, 1466, 1785, 2677, 2906
MaeI	CTAG	6 cut(s)	567, 734, 1154, 1356, 2351, 2637
MaeII	ACGT	4 cut(s)	49, 294, 1991, 2932
MaeIII	GTNAC	4 cut(s)	1864, 1940, 2312, 2470
MfeI	CAATTG	3 cut(s)	1922, 2510, 2950
MflI	RGATCY	2 cut(s)	1285, 2302
MhlI	GDGCHC	1 cut(s)	225
MlyI	GAGTC	2 cut(s)	629, 2246
MmeI	TCCRAC	2 cut(s)	1686, 2654
Mph1103I	ATGCAT	2 cut(s)	1117, 1778
MroXI	GAANNNNTTC	4 cut(s)	928, 1201, 1662, 2748
MslI	CAYNNNNRTG	3 cut(s)	599, 632, 2619
MspCI	CTTAAG	1 cut(s)	182
MspI	CCGG	3 cut(s)	583, 1133, 1945
MspR9I	CCNGG	5 cut(s)	584, 1680, 1694, 1893, 2987
MssI	GTTTAAAC	1 cut(s)	1546
MunI	CAATTG	3 cut(s)	1922, 2510, 2950
MvaI	CCWGG	4 cut(s)	1680, 1694, 1893, 2987
MwoI	GCNNNNNNNGC	2 cut(s)	2441, 2789
NciI	CCSGG	1 cut(s)	584
NlaIV	GGNNCC	6 cut(s)	191, 1800, 2116, 2179, 2694, 2719
NmuCI	GTSAC	1 cut(s)	2470
NsiI	ATGCAT	2 cut(s)	1117, 1778
NspI	RCATGY	5 cut(s)	249, 1384, 1415, 2038, 2624
NspV	TTCGAA	1 cut(s)	1507
PaeI	GCATGC	1 cut(s)	249
PagI	TCATGA	1 cut(s)	1126
PaqCI	CACCTGC	1 cut(s)	2794
PciSI	GCTCTTC	2 cut(s)	27, 2129
PcsI	WCGNNNNNNNCGW	1 cut(s)	1997
PdmI	GAANNNNTTC	4 cut(s)	928, 1201, 1662, 2748
PfeI	GAWTC	6 cut(s)	206, 694, 715, 869, 2729, 2912
PflMI	CCANNNNNTGG	2 cut(s)	2367, 2623
PfoI	TCCNGGA	1 cut(s)	1891
PkrI	GCNGC	3 cut(s)	1146, 2359, 2791
PleI	GAGTC	2 cut(s)	628, 2246
PmeI	GTTTAAAC	1 cut(s)	1546
PpsI	GAGTC	2 cut(s)	628, 2246
PpuMI	RGGWCCY	1 cut(s)	2717
PshAI	GACNNNNGTC	1 cut(s)	1084
PsiI	TTATAA	2 cut(s)	291, 1965
Psp124BI	GAGCTC	1 cut(s)	225
Psp5II	RGGWCCY	1 cut(s)	2717
Psp6I	CCWGG	4 cut(s)	1678, 1692, 1891, 2985
PspGI	CCWGG	4 cut(s)	1678, 1692, 1891, 2985
PspN4I	GGNNCC	6 cut(s)	191, 1800, 2116, 2179, 2694, 2719
PspPI	GGNCC	3 cut(s)	1396, 1799, 2717
PspPPI	RGGWCCY	1 cut(s)	2717
PsuI	RGATCY	2 cut(s)	1285, 2302
RsaI	GTAC	8 cut(s)	191, 231, 571, 579, 921, 1301, 2338, 2908
RsaNI	GTAC	8 cut(s)	190, 230, 570, 578, 920, 1300, 2337, 2907
RseI	CAYNNNNRTG	3 cut(s)	599, 632, 2619
SacI	GAGCTC	1 cut(s)	225
SapI	GCTCTTC	2 cut(s)	27, 2129
SatI	GCNGC	3 cut(s)	1145, 2358, 2790
Sau96I	GGNCC	3 cut(s)	1396, 1799, 2717
SchI	GAGTC	2 cut(s)	629, 2246
ScrFI	CCNGG	5 cut(s)	584, 1680, 1694, 1893, 2987
SduI	GDGCHC	1 cut(s)	225
SfaNI	GCATC	6 cut(s)	35, 1131, 1466, 1785, 2677, 2906
SfcI	CTRYAG	2 cut(s)	1473, 2269
SfuI	TTCGAA	1 cut(s)	1507
SinI	GGWCC	2 cut(s)	1799, 2717
SmiMI	CAYNNNNRTG	3 cut(s)	599, 632, 2619
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
SphI	GCATGC	1 cut(s)	249
SsiI	CCGC	4 cut(s)	187, 430, 1144, 1261
SspI	AATATT	5 cut(s)	802, 952, 1175, 1899, 2405
SspMI	CTAG	6 cut(s)	567, 734, 1154, 1356, 2351, 2637
SstI	GAGCTC	1 cut(s)	225
StyD4I	CCNGG	5 cut(s)	582, 1678, 1692, 1891, 2985
StyI	CCWWGG	3 cut(s)	194, 2181, 2366
TaaI	ACNGT	5 cut(s)	730, 1086, 1370, 1474, 2171
TaiI	ACGT	4 cut(s)	52, 297, 1994, 2935
TaqI	TCGA	3 cut(s)	747, 1403, 1507
TatI	WGTACW	5 cut(s)	569, 577, 1299, 2336, 2906
TauI	GCSGC	1 cut(s)	1147
TfiI	GAWTC	6 cut(s)	206, 694, 715, 869, 2729, 2912
TscAI	CASTG	7 cut(s)	399, 991, 1656, 2294, 2557, 2694, 2823
TseFI	GTSAC	1 cut(s)	2470
TseI	GCWGC	2 cut(s)	2357, 2789
Tsp45I	GTSAC	1 cut(s)	2470
TspGWI	ACGGA	1 cut(s)	1647
TspRI	CASTG	7 cut(s)	399, 991, 1656, 2294, 2557, 2694, 2823
Van91I	CCANNNNNTGG	2 cut(s)	2367, 2623
Vha464I	CTTAAG	1 cut(s)	182
VpaK11BI	GGWCC	2 cut(s)	1799, 2717
XagI	CCTNNNNNAGG	2 cut(s)	1152, 1244
XapI	RAATTY	9 cut(s)	165, 647, 703, 1201, 1603, 1948, 2204, 2745, 2765
XbaI	TCTAGA	1 cut(s)	733
XceI	RCATGY	5 cut(s)	249, 1384, 1415, 2038, 2624
XmiI	GTMKAC	4 cut(s)	88, 1377, 2500, 2843
XmnI	GAANNNNTTC	4 cut(s)	928, 1201, 1662, 2748
XspI	CTAG	6 cut(s)	567, 734, 1154, 1356, 2351, 2637
Zsp2I	ATGCAT	2 cut(s)	1117, 1778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.