Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012226.1

Orthogroup ID

OG0005477

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2512

Gene Structure 2512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012226.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1444 bp

atgatgaagaactatccactacttctccgtaagttcatggcagacaaagcaaaaataccatcactggttgacattattctacacatgaatcttgggctatattccaagaggaggcaggagcagaatttcgaaaccgtccttcaactgatcaaagaggcatttttcaaacatggtgagaaggaggcgctgagatcttgcgcaaatgctatcatgctttgttcaacagacagtcaaggggagctaaaagatacggcccgtaatttagttaaggaacttcatgatgagcttataaataataagcttaaacctgcgatgaaagaagtggtggatggtggtgatgaatatcctcttcttgtaaatttgaagagaatgtatgagcttcaattgtcaggaaatgtgcctatcgagagtttgtatgaagatatggtctcaactcttcagagctatacaaacaaggatgatcaggttgtcacttttctgcttctcaacatgtatatgcatgtgcaatggtctctgcatgccatcatacatagtcctactatctcagaggcatctttatcttctatattagcgaaacgtgattctttgttagagcgactagagtacatccttaacagctgtcttgaaatggagggtaatcgctgcaatcagctagctcgctgggtttgtgttatactcactgatttgtctcgactgttcaaaaagacaaactttgcttcgtcgaagctggaaaaattaggatattctccagatgcatcggttcttcagaagttttggaaactttgtgtgcaacagctcagtatttcagatgagacggaagatgacgatgggaacaaagagtatattgaggagacaaatagagatactgtcatgatggctgctgtacggttagctgttactgataaagtttataaggagtacctgggtccagagattatttctagatttgtgatgcatggtacaagtgtagcagagatagttaagcatctgataacttttctgaagaagaatgatgatgatcttccgaaaactttcttggaagcgctgaaaatggcctaccatcggtatatggttgaactatctagaagtgatgatgaatctttagcaagcaagcattttctagagtttcaagaactagctgctcagctttctgggacatttataggtgcttccaagaacaggcacaaatcagacattttaaaaattgttaacgagggaattgaatatgcttttatagaagctccaaagcagttgtcctttctggaaggtgctgtgctccattttgtgtccaaattgcctacacctgatattctggagattaacgtcaatattcaaaatcgaacggagaatgtaaatatggatgaagatcccagtggctggcgtccttatcacacattcgttcagactttgcgggaaaaatttgcaaagattgaagttatccaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007127 GO:0007135 GO:0008150 GO:0008608 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464 GO:0045132 GO:0045143 GO:0045144 GO:0048285 GO:0051177 GO:0051276 GO:0051316 GO:0051321 GO:0051455 GO:0051754 GO:0061982 GO:0061983 GO:0070192 GO:0070601 GO:0071840 GO:0098813 GO:0140013 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

STAG

Protein Analysis

481

Amino Acids

55.26

Weight (kDa)

5.72

Isoelectric Point (pI)

46.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47980
fragaria_vesca	FvH4_2g24570 FvH4_2g24570 FvH4_2g24570 FvH4_2g24570 FvH4_2g24570 FvH4_2g24570
malus_domestica	MD11G1296700.v1.1
prunus_persica	Prupe.8G250900_v2.0.a1 Prupe.8G250900_v2.0.a1 Prupe.8G250900_v2.0.a1 Prupe.8G250900_v2.0.a1 Prupe.8G250900_v2.0.a1 Prupe.8G250900_v2.0.a1
pyrus_communis	pycom11g26100
rosa_chinensis	RchiOBHm_Chr6g0292391
rosa_laevigata	RLG00000012032
rosa_multiflora	Rmu_sc0012226.1_g000001 Rmu_sc0023540.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026580 Rroxscaffold_7G00175100
rosa_rugosa	Rorug06G0226100 Rorug06G0226200 Rorug06G0226300
rosa_samantha	Rh6AG339600 Rh6BG346800 Rh6CG353600 Rh6DG339600
rosa_wichuraiana	Rw6G029550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	290, 912
Acc16I	TGCGCA	1 cut(s)	199
Acc36I	ACCTGC	1 cut(s)	316
AccB7I	CCANNNNNTGG	1 cut(s)	1377
AciI	CCGC	1 cut(s)	1411
AclWI	GGATC	1 cut(s)	1361
AcsI	RAATTY	3 cut(s)	124, 358, 1418
AcuI	CTGAAG	3 cut(s)	422, 749, 1022
AcyI	GRCGYC	1 cut(s)	1381
AfaI	GTAC	4 cut(s)	605, 885, 920, 961
AfeI	AGCGCT	1 cut(s)	1044
AfiI	CCNNNNNNNGG	4 cut(s)	111, 1062, 1179, 1377
AflIII	ACRYGT	1 cut(s)	489
AjnI	CCWGG	1 cut(s)	921
AjuI	GAANNNNNNNTTGG	2 cut(s)	1019, 1051
Alw21I	GWGCWC	1 cut(s)	1278
Alw26I	GTCTC	5 cut(s)	433, 516, 693, 806, 845
AlwI	GGATC	1 cut(s)	1361
AlwNI	CAGNNNCTG	1 cut(s)	1377
Aor51HI	AGCGCT	1 cut(s)	1044
AoxI	GGCC	2 cut(s)	252, 1053
ApeKI	GCWGC	3 cut(s)	642, 878, 1139
ApoI	RAATTY	3 cut(s)	124, 358, 1418
ArsI	GACNNNNNNTTYG	2 cut(s)	1238, 1270
Asp700I	GAANNNNTTC	1 cut(s)	1031
AspLEI	GCGC	3 cut(s)	187, 200, 1045
AspS9I	GGNCC	2 cut(s)	253, 926
AsuHPI	GGTGA	2 cut(s)	185, 347
AsuII	TTCGAA	1 cut(s)	129
AsuNHI	GCTAGC	1 cut(s)	652
AvaII	GGWCC	1 cut(s)	926
BaeI	ACNNNNGTAYC	2 cut(s)	951, 984
Bbv12I	GWGCWC	1 cut(s)	1278
BbvI	GCAGC	3 cut(s)	629, 865, 1126
BccI	CCATC	6 cut(s)	67, 323, 530, 821, 868, 1068
BceAI	ACGGC	1 cut(s)	267
BciT130I	CCWGG	1 cut(s)	923
BclI	TGATCA	2 cut(s)	147, 460
BcoDI	GTCTC	5 cut(s)	433, 516, 693, 806, 845
BfaI	CTAG	6 cut(s)	599, 653, 942, 1083, 1121, 1136
BfoI	RGCGCY	2 cut(s)	188, 1046
BfuAI	ACCTGC	1 cut(s)	316
BglII	AGATCT	1 cut(s)	191
BisI	GCNGC	3 cut(s)	643, 879, 1140
BlpI	GCTNAGC	1 cut(s)	1143
BlsI	GCNGC	3 cut(s)	644, 880, 1141
Bme1390I	CCNGG	1 cut(s)	923
Bme18I	GGWCC	1 cut(s)	926
BmgT120I	GGNCC	2 cut(s)	253, 926
BmiI	GGNNCC	1 cut(s)	927
BmrFI	CCNGG	1 cut(s)	923
BmrI	ACTGGG	1 cut(s)	1365
BmsI	GCATC	5 cut(s)	560, 742, 764, 942, 994
BmtI	GCTAGC	1 cut(s)	656
BmuI	ACTGGG	1 cut(s)	1365
BpmI	CTGGAG	2 cut(s)	732, 1334
Bpu1102I	GCTNAGC	1 cut(s)	1143
Bpu14I	TTCGAA	1 cut(s)	129
BsaBI	GATNNNNATC	3 cut(s)	342, 1017, 1365
BsaHI	GRCGYC	1 cut(s)	1381
BsaI	GGTCTC	2 cut(s)	433, 516
BsaJI	CCNNGG	1 cut(s)	922
BsaXI	ACNNNNNCTCC	2 cut(s)	9, 39
Bsc4I	CCNNNNNNNGG	4 cut(s)	111, 1062, 1179, 1377
Bse1I	ACTGG	2 cut(s)	69, 1371
Bse3DI	GCAATG	1 cut(s)	512
Bse8I	GATNNNNATC	3 cut(s)	342, 1017, 1365
BseBI	CCWGG	1 cut(s)	923
BseDI	CCNNGG	1 cut(s)	922
BseGI	GGATG	4 cut(s)	334, 463, 606, 1366
BseJI	GATNNNNATC	3 cut(s)	342, 1017, 1365
BseLI	CCNNNNNNNGG	4 cut(s)	111, 1062, 1179, 1377
BseMI	GCAATG	1 cut(s)	512
BseMII	CTCAG	4 cut(s)	179, 558, 811, 1157
BseNI	ACTGG	2 cut(s)	69, 1371
BseRI	GAGGAG	2 cut(s)	124, 863
BseXI	GCAGC	3 cut(s)	629, 865, 1126
BseYI	CCCAGC	1 cut(s)	660
BshFI	GGCC	2 cut(s)	254, 1055
BsiHKAI	GWGCWC	1 cut(s)	1278
BslFI	GGGAC	1 cut(s)	1168
BslI	CCNNNNNNNGG	4 cut(s)	111, 1062, 1179, 1377
BsmAI	GTCTC	5 cut(s)	433, 516, 693, 806, 845
BsmBI	CGTCTC	1 cut(s)	806
BsmFI	GGGAC	1 cut(s)	1168
BsnI	GGCC	2 cut(s)	254, 1055
Bso31I	GGTCTC	2 cut(s)	433, 516
Bsp119I	TTCGAA	1 cut(s)	129
Bsp1286I	GDGCHC	1 cut(s)	1278
Bsp143I	GATC	5 cut(s)	147, 191, 460, 1018, 1366
Bsp1720I	GCTNAGC	1 cut(s)	1143
BspACI	CCGC	1 cut(s)	1411
BspANI	GGCC	2 cut(s)	254, 1055
BspCNI	CTCAG	4 cut(s)	180, 557, 810, 1156
BspHI	TCATGA	2 cut(s)	277, 870
BspLI	GGNNCC	1 cut(s)	927
BspMI	ACCTGC	1 cut(s)	316
BspOI	GCTAGC	1 cut(s)	656
BspPI	GGATC	1 cut(s)	1361
BspT104I	TTCGAA	1 cut(s)	129
BspTNI	GGTCTC	2 cut(s)	433, 516
BsrDI	GCAATG	1 cut(s)	512
BsrI	ACTGG	2 cut(s)	69, 1371
BssECI	CCNNGG	1 cut(s)	922
BssMI	GATC	5 cut(s)	147, 191, 460, 1018, 1366
BssNI	GRCGYC	1 cut(s)	1381
Bst2UI	CCWGG	1 cut(s)	923
Bst4CI	ACNGT	5 cut(s)	136, 230, 696, 868, 888
Bst6I	CTCTTC	3 cut(s)	354, 359, 441
BstACI	GRCGYC	1 cut(s)	1381
BstBI	TTCGAA	1 cut(s)	129
BstC8I	GCNNGC	6 cut(s)	519, 654, 658, 1108, 1112, 1379
BstDEI	CTNAG	4 cut(s)	188, 544, 797, 1143
BstF5I	GGATG	4 cut(s)	334, 463, 606, 1366
BstH2I	RGCGCY	2 cut(s)	188, 1046
BstHHI	GCGC	3 cut(s)	187, 200, 1045
BstKTI	GATC	5 cut(s)	150, 194, 463, 1021, 1369
BstMAI	GTCTC	5 cut(s)	433, 516, 693, 806, 845
BstMBI	GATC	5 cut(s)	147, 191, 460, 1018, 1366
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstNI	CCWGG	1 cut(s)	923
BstNSI	RCATGY	3 cut(s)	493, 503, 521
BstSCI	CCNGG	1 cut(s)	921
BstV1I	GCAGC	3 cut(s)	629, 865, 1126
BstX2I	RGATCY	2 cut(s)	191, 1366
BstYI	RGATCY	2 cut(s)	191, 1366
BsuRI	GGCC	2 cut(s)	254, 1055
BtgZI	GCGATG	1 cut(s)	326
BtsCI	GGATG	4 cut(s)	334, 463, 606, 1366
BtsIMutI	CAGTG	3 cut(s)	62, 678, 1378
BveI	ACCTGC	1 cut(s)	316
Cac8I	GCNNGC	6 cut(s)	519, 654, 658, 1108, 1112, 1379
CaiI	CAGNNNCTG	1 cut(s)	1377
CciI	TCATGA	2 cut(s)	277, 870
CfoI	GCGC	3 cut(s)	187, 200, 1045
Cfr13I	GGNCC	2 cut(s)	253, 926
CseI	GACGC	1 cut(s)	1370
Csp6I	GTAC	4 cut(s)	604, 884, 919, 960
CviQI	GTAC	4 cut(s)	604, 884, 919, 960
DdeI	CTNAG	4 cut(s)	188, 544, 797, 1143
DpnI	GATC	5 cut(s)	149, 193, 462, 1020, 1368
DpnII	GATC	5 cut(s)	147, 191, 460, 1018, 1366
DraI	TTTAAA	1 cut(s)	1200
Eam1104I	CTCTTC	3 cut(s)	354, 359, 441
EarI	CTCTTC	3 cut(s)	354, 359, 441
Eco31I	GGTCTC	2 cut(s)	433, 516
Eco47I	GGWCC	1 cut(s)	926
Eco47III	AGCGCT	1 cut(s)	1044
Eco57I	CTGAAG	3 cut(s)	422, 749, 1022
EcoRII	CCWGG	1 cut(s)	921
EcoT22I	ATGCAT	3 cut(s)	501, 757, 957
Esp3I	CGTCTC	1 cut(s)	806
FalI	AAGNNNNNCTT	2 cut(s)	695, 727
FaqI	GGGAC	1 cut(s)	1168
FauI	CCCGC	1 cut(s)	1404
FbaI	TGATCA	2 cut(s)	147, 460
Fnu4HI	GCNGC	3 cut(s)	643, 879, 1140
FokI	GGATG	4 cut(s)	341, 470, 593, 1373
Fsp4HI	GCNGC	3 cut(s)	643, 879, 1140
FspBI	CTAG	6 cut(s)	599, 653, 942, 1083, 1121, 1136
FspI	TGCGCA	1 cut(s)	199
GlaI	GCGC	3 cut(s)	186, 199, 1044
GluI	GCNGC	3 cut(s)	643, 879, 1140
GsaI	CCCAGC	1 cut(s)	664
GsuI	CTGGAG	2 cut(s)	732, 1334
HaeII	RGCGCY	2 cut(s)	188, 1046
HaeIII	GGCC	2 cut(s)	254, 1055
HgaI	GACGC	1 cut(s)	1370
HhaI	GCGC	3 cut(s)	187, 200, 1045
Hin1I	GRCGYC	1 cut(s)	1381
Hin6I	GCGC	3 cut(s)	185, 198, 1043
HinP1I	GCGC	3 cut(s)	185, 198, 1043
HincII	GTYRAC	2 cut(s)	70, 1210
HindII	GTYRAC	2 cut(s)	70, 1210
HindIII	AAGCTT	1 cut(s)	299
HinfI	GANTC	3 cut(s)	88, 581, 1097
HpaI	GTTAAC	1 cut(s)	1210
HphI	GGTGA	2 cut(s)	185, 347
Hpy166II	GTNNAC	2 cut(s)	70, 1210
Hpy188I	TCNGA	9 cut(s)	441, 547, 768, 808, 990, 1002, 1026, 1192, 1404
Hpy8I	GTNNAC	2 cut(s)	70, 1210
Hpy99I	CGWCG	1 cut(s)	724
HpyAV	CCTTC	3 cut(s)	149, 172, 1259
HpyCH4III	ACNGT	5 cut(s)	136, 230, 696, 868, 888
HpyCH4IV	ACGT	2 cut(s)	577, 1323
HpyCH4V	TGCA	8 cut(s)	499, 505, 517, 645, 755, 790, 955, 1424
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpyF3I	CTNAG	4 cut(s)	188, 544, 797, 1143
HpySE526I	ACGT	2 cut(s)	577, 1323
Hsp92I	GRCGYC	1 cut(s)	1381
HspAI	GCGC	3 cut(s)	185, 198, 1043
Ksp22I	TGATCA	2 cut(s)	147, 460
KspAI	GTTAAC	1 cut(s)	1210
Kzo9I	GATC	5 cut(s)	147, 191, 460, 1018, 1366
LmnI	GCTCC	4 cut(s)	118, 238, 1246, 1281
Lsp1109I	GCAGC	3 cut(s)	629, 865, 1126
LweI	GCATC	5 cut(s)	560, 742, 764, 942, 994
MaeI	CTAG	6 cut(s)	599, 653, 942, 1083, 1121, 1136
MaeII	ACGT	2 cut(s)	577, 1323
MaeIII	GTNAC	2 cut(s)	469, 895
MalI	GATC	5 cut(s)	149, 193, 462, 1020, 1368
MboI	GATC	5 cut(s)	147, 191, 460, 1018, 1366
MfeI	CAATTG	1 cut(s)	383
MflI	RGATCY	2 cut(s)	191, 1366
MhlI	GDGCHC	1 cut(s)	1278
MluCI	AATT	9 cut(s)	124, 259, 358, 383, 734, 1203, 1218, 1292, 1418
MnlI	CCTC	9 cut(s)	102, 105, 148, 175, 357, 541, 625, 841, 1207
Mph1103I	ATGCAT	3 cut(s)	501, 757, 957
MroXI	GAANNNNTTC	1 cut(s)	1031
MseI	TTAA	7 cut(s)	267, 303, 612, 981, 1199, 1209, 1320
MslI	CAYNNNNRTG	1 cut(s)	494
MspA1I	CMGCKG	1 cut(s)	618
MspR9I	CCNGG	1 cut(s)	923
MunI	CAATTG	1 cut(s)	383
MvaI	CCWGG	1 cut(s)	923
MwoI	GCNNNNNNNGC	1 cut(s)	47
NdeII	GATC	5 cut(s)	147, 191, 460, 1018, 1366
NheI	GCTAGC	1 cut(s)	652
NlaIV	GGNNCC	1 cut(s)	927
NmuCI	GTSAC	1 cut(s)	469
NsbI	TGCGCA	1 cut(s)	199
NsiI	ATGCAT	3 cut(s)	501, 757, 957
NspI	RCATGY	3 cut(s)	493, 503, 521
NspV	TTCGAA	1 cut(s)	129
PaeI	GCATGC	1 cut(s)	521
PagI	TCATGA	2 cut(s)	277, 870
PciI	ACATGT	1 cut(s)	489
PdmI	GAANNNNTTC	1 cut(s)	1031
PfeI	GAWTC	3 cut(s)	88, 581, 1097
PflMI	CCANNNNNTGG	1 cut(s)	1377
PkrI	GCNGC	3 cut(s)	644, 880, 1141
PscI	ACATGT	1 cut(s)	489
PsiI	TTATAA	2 cut(s)	290, 912
Psp6I	CCWGG	1 cut(s)	921
PspFI	CCCAGC	1 cut(s)	660
PspGI	CCWGG	1 cut(s)	921
PspN4I	GGNNCC	1 cut(s)	927
PspPI	GGNCC	2 cut(s)	253, 926
PstNI	CAGNNNCTG	1 cut(s)	1377
PsuI	RGATCY	2 cut(s)	191, 1366
PvuII	CAGCTG	1 cut(s)	618
RsaI	GTAC	4 cut(s)	605, 885, 920, 961
RsaNI	GTAC	4 cut(s)	604, 884, 919, 960
RseI	CAYNNNNRTG	1 cut(s)	494
SaqAI	TTAA	7 cut(s)	267, 303, 612, 981, 1199, 1209, 1320
SatI	GCNGC	3 cut(s)	643, 879, 1140
Sau3AI	GATC	5 cut(s)	147, 191, 460, 1018, 1366
Sau96I	GGNCC	2 cut(s)	253, 926
ScrFI	CCNGG	1 cut(s)	923
SduI	GDGCHC	1 cut(s)	1278
SfaNI	GCATC	5 cut(s)	560, 742, 764, 942, 994
SfuI	TTCGAA	1 cut(s)	129
SinI	GGWCC	1 cut(s)	926
SmiMI	CAYNNNNRTG	1 cut(s)	494
SphI	GCATGC	1 cut(s)	521
Sse9I	AATT	9 cut(s)	124, 259, 358, 383, 734, 1203, 1218, 1292, 1418
SsiI	CCGC	1 cut(s)	1411
SspI	AATATT	1 cut(s)	1330
SspMI	CTAG	6 cut(s)	599, 653, 942, 1083, 1121, 1136
StyD4I	CCNGG	1 cut(s)	921
TaaI	ACNGT	5 cut(s)	136, 230, 696, 868, 888
TaiI	ACGT	2 cut(s)	580, 1326
TaqI	TCGA	5 cut(s)	129, 405, 691, 722, 1339
TasI	AATT	9 cut(s)	124, 259, 358, 383, 734, 1203, 1218, 1292, 1418
TatI	WGTACW	1 cut(s)	603
TfiI	GAWTC	3 cut(s)	88, 581, 1097
Tru1I	TTAA	7 cut(s)	267, 303, 612, 981, 1199, 1209, 1320
Tru9I	TTAA	7 cut(s)	267, 303, 612, 981, 1199, 1209, 1320
TscAI	CASTG	3 cut(s)	69, 685, 1378
TseFI	GTSAC	1 cut(s)	469
TseI	GCWGC	3 cut(s)	642, 878, 1139
Tsp45I	GTSAC	1 cut(s)	469
TspDTI	ATGAA	9 cut(s)	20, 25, 101, 266, 329, 354, 432, 1110, 1377
TspGWI	ACGGA	3 cut(s)	17, 830, 1358
TspRI	CASTG	3 cut(s)	69, 685, 1378
Van91I	CCANNNNNTGG	1 cut(s)	1377
VpaK11BI	GGWCC	1 cut(s)	926
XapI	RAATTY	3 cut(s)	124, 358, 1418
XbaI	TCTAGA	3 cut(s)	941, 1082, 1120
XceI	RCATGY	3 cut(s)	493, 503, 521
XmnI	GAANNNNTTC	1 cut(s)	1031
XspI	CTAG	6 cut(s)	599, 653, 942, 1083, 1121, 1136
Zsp2I	ATGCAT	3 cut(s)	501, 757, 957

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.