Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005477

Physical Location & Seq

Genomic Coordinates Forward (+)

36335212 .. 36337200

Gene Structure 1989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0226300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGCTGAGACGATTAGTCCAGTGCTTATCAATCATAGGCCTTTTGAACCCAACAGTACCATCATCAACTCCCATCACTCATCCTTCCTGGACCAAAACCCTAATGTCGACACCATTGTGGCTATTGATGATATAGAAATCCCCACAGTTGATTTCTCTGTGCTATTCTCTGATGATCTTGAAAAAAGAGCCAAGGCCATTGAAAACATTGGCCATGTCTGCGAGGACTTTGGCTTCTTCTATCTGGTAAATCATGGCGTGTCAGATAAGGTATTTGAGAGTGTTTTCAAAGGAATATCTGACTTCTTCAATCCAACGGAAATCGAGGACCGAAAGCAGTATGAGAAAAAGAACCCAACAGATAGAATCCGATGGGGACTTCGATCTTCTCCTGGGGAGAATAGAGAATATCTTAAGGTGATTGCACATCCTGAGTACCACTGTCCTGCTAAACCAGCTGGTTTCAGTGAGGCTATGGAAGAATATTTCAAAAGACTGAGAGTTATAGTAGACGGTTTGGGAAAGGCAGTTTCAAAAGCCATGGGATTTGAAGAATGCTACATAGAAAAAGTTTTTAAGCTTGACTCGGGGTTCGATATGTCTGCGATGAACTTATACCCACCCAATTTCAGATCAAAAGGTTCCATTGGTGTGCCTAACCATACTGATCCTGGCTTCTTTGTTTCACTCATTCAAGACGTGAATAGTGGCCTGCAAATACTATCCCATAAGGGAGACTGGATCAATGTTAACATGCCCCCTAATGCCATTTTCATAAACCTTGGGGATCATCTTGAGATCTTAACAAATGGGAAGTACAAGAGCCATGTTCATCGTGTTGTTGTGGACAACAACAAAGTGAAGAGGATCTCAGTGGCCACACTCCATGGACCTTCGTTGGACTCGTTTGTGTCTCCGGCACCAGAGTTTGTTGATGAGTCTCACCCACCTATATATCGTGGAATGACTTACAAGCAATCTTTGGAGGTTAACGGCGGCGACGAGATAGATGTTCAATCGAGTCTTGAACAAATTCGGATTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007127 GO:0007135 GO:0008150 GO:0008608 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464 GO:0045132 GO:0045143 GO:0045144 GO:0048285 GO:0051177 GO:0051276 GO:0051316 GO:0051321 GO:0051455 GO:0051754 GO:0061982 GO:0061983 GO:0070192 GO:0070601 GO:0071840 GO:0098813 GO:0140013 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

STAG

Protein Analysis

348

Amino Acids

39.24

Weight (kDa)

5.39

Isoelectric Point (pI)

49.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	47 - 119	7.9e-15	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	200 - 297	3.4e-23	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47980
fragaria_vesca	FvH4_2g24570 FvH4_2g24570 FvH4_2g24570 FvH4_2g24570 FvH4_2g24570 FvH4_2g24570
malus_domestica	MD11G1296700.v1.1
prunus_persica	Prupe.8G250900_v2.0.a1 Prupe.8G250900_v2.0.a1 Prupe.8G250900_v2.0.a1 Prupe.8G250900_v2.0.a1 Prupe.8G250900_v2.0.a1 Prupe.8G250900_v2.0.a1
pyrus_communis	pycom11g26100
rosa_chinensis	RchiOBHm_Chr6g0292391
rosa_laevigata	RLG00000012032
rosa_multiflora	Rmu_sc0012226.1_g000001 Rmu_sc0023540.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026580 Rroxscaffold_7G00175100
rosa_rugosa	Rorug06G0226100 Rorug06G0226200 Rorug06G0226300
rosa_samantha	Rh6AG339600 Rh6BG346800 Rh6CG353600 Rh6DG339600
rosa_wichuraiana	Rw6G029550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	919
AccI	GTMKAC	2 cut(s)	108, 510
AciI	CCGC	1 cut(s)	996
AclWI	GGATC	4 cut(s)	662, 749, 795, 875
AcoI	YGGCCR	2 cut(s)	211, 876
AcsI	RAATTY	1 cut(s)	1032
AfaI	GTAC	3 cut(s)	58, 437, 818
AflII	CTTAAG	1 cut(s)	413
AhdI	GACNNNNNGTC	1 cut(s)	15
AjiI	CACGTC	1 cut(s)	700
AjnI	CCWGG	3 cut(s)	87, 391, 670
AleI	CACNNNNGTG	1 cut(s)	116
AluBI	AGCT	2 cut(s)	458, 580
AluI	AGCT	2 cut(s)	458, 580
Alw26I	GTCTC	4 cut(s)	2, 729, 918, 945
AlwI	GGATC	4 cut(s)	662, 749, 795, 875
Ama87I	CYCGRG	1 cut(s)	586
AoxI	GGCC	5 cut(s)	38, 195, 211, 709, 876
ApoI	RAATTY	1 cut(s)	1032
ArsI	GACNNNNNNTTYG	2 cut(s)	575, 607
Asp700I	GAANNNNTTC	1 cut(s)	1032
AspS9I	GGNCC	3 cut(s)	91, 328, 890
AsuHPI	GGTGA	2 cut(s)	430, 935
AvaI	CYCGRG	1 cut(s)	586
AvaII	GGWCC	3 cut(s)	91, 328, 890
BalI	TGGCCA	2 cut(s)	213, 878
BanI	GGYRCC	1 cut(s)	919
BccI	CCATC	3 cut(s)	68, 81, 366
BceAI	ACGGC	1 cut(s)	1009
BcgI	CGANNNNNNTGC	2 cut(s)	584, 618
BciT130I	CCWGG	3 cut(s)	89, 393, 672
BcoDI	GTCTC	4 cut(s)	2, 729, 918, 945
BfrI	CTTAAG	1 cut(s)	413
BglII	AGATCT	1 cut(s)	798
BisI	GCNGC	1 cut(s)	997
BlsI	GCNGC	1 cut(s)	998
Bme1390I	CCNGG	3 cut(s)	89, 393, 672
Bme18I	GGWCC	3 cut(s)	91, 328, 890
BmeRI	GACNNNNNGTC	1 cut(s)	15
BmeT110I	CYCGRG	1 cut(s)	586
BmgBI	CACGTC	1 cut(s)	700
BmgT120I	GGNCC	3 cut(s)	91, 328, 890
BmiI	GGNNCC	2 cut(s)	643, 921
BmrFI	CCNGG	3 cut(s)	89, 393, 672
BpuEI	CTTGAG	1 cut(s)	815
BsaJI	CCNNGG	5 cut(s)	192, 392, 540, 781, 886
Bse1I	ACTGG	2 cut(s)	20, 743
BseBI	CCWGG	3 cut(s)	89, 393, 672
BseDI	CCNNGG	5 cut(s)	192, 392, 540, 781, 886
BseGI	GGATG	2 cut(s)	80, 427
BseMII	CTCAG	3 cut(s)	423, 488, 885
BseNI	ACTGG	2 cut(s)	20, 743
BshFI	GGCC	5 cut(s)	40, 197, 213, 711, 878
BshNI	GGYRCC	1 cut(s)	919
BsiHKCI	CYCGRG	1 cut(s)	586
BsiSI	CCGG	1 cut(s)	917
BslFI	GGGAC	1 cut(s)	390
BsmAI	GTCTC	4 cut(s)	2, 729, 918, 945
BsmBI	CGTCTC	1 cut(s)	2
BsmFI	GGGAC	1 cut(s)	390
BsmI	GAATGC	1 cut(s)	560
BsnI	GGCC	5 cut(s)	40, 197, 213, 711, 878
BsoBI	CYCGRG	1 cut(s)	586
Bsp143I	GATC	8 cut(s)	175, 383, 632, 667, 741, 787, 798, 867
Bsp19I	CCATGG	2 cut(s)	540, 886
BspACI	CCGC	1 cut(s)	996
BspANI	GGCC	5 cut(s)	40, 197, 213, 711, 878
BspCNI	CTCAG	3 cut(s)	424, 489, 884
BspLI	GGNNCC	2 cut(s)	643, 921
BspPI	GGATC	4 cut(s)	662, 749, 795, 875
BspT107I	GGYRCC	1 cut(s)	919
BspTI	CTTAAG	1 cut(s)	413
BsrI	ACTGG	2 cut(s)	20, 743
BssECI	CCNNGG	5 cut(s)	192, 392, 540, 781, 886
BssMI	GATC	8 cut(s)	175, 383, 632, 667, 741, 787, 798, 867
BssT1I	CCWWGG	4 cut(s)	192, 540, 781, 886
Bst2UI	CCWGG	3 cut(s)	89, 393, 672
Bst4CI	ACNGT	4 cut(s)	56, 148, 443, 515
Bst6I	CTCTTC	1 cut(s)	857
BstAFI	CTTAAG	1 cut(s)	413
BstC8I	GCNNGC	1 cut(s)	713
BstDEI	CTNAG	4 cut(s)	6, 432, 497, 871
BstDSI	CCRYGG	2 cut(s)	540, 886
BstF5I	GGATG	2 cut(s)	80, 427
BstKTI	GATC	8 cut(s)	178, 386, 635, 670, 744, 790, 801, 870
BstMAI	GTCTC	4 cut(s)	2, 729, 918, 945
BstMBI	GATC	8 cut(s)	175, 383, 632, 667, 741, 787, 798, 867
BstMWI	GCNNNNNNNGC	2 cut(s)	219, 455
BstNI	CCWGG	3 cut(s)	89, 393, 672
BstNSI	RCATGY	1 cut(s)	757
BstSCI	CCNGG	3 cut(s)	87, 391, 670
BstX2I	RGATCY	2 cut(s)	798, 867
BstYI	RGATCY	2 cut(s)	798, 867
BsuRI	GGCC	5 cut(s)	40, 197, 213, 711, 878
BtgI	CCRYGG	2 cut(s)	540, 886
BtgZI	GCGATG	1 cut(s)	620
BtrI	CACGTC	1 cut(s)	700
BtsCI	GGATG	2 cut(s)	80, 427
BtsIMutI	CAGTG	4 cut(s)	27, 439, 472, 879
Cac8I	GCNNGC	1 cut(s)	713
Cfr13I	GGNCC	3 cut(s)	91, 328, 890
Csp6I	GTAC	3 cut(s)	57, 436, 817
CviAII	CATG	6 cut(s)	215, 254, 541, 754, 827, 887
CviQI	GTAC	3 cut(s)	57, 436, 817
DdeI	CTNAG	4 cut(s)	6, 432, 497, 871
DpnI	GATC	8 cut(s)	177, 385, 634, 669, 743, 789, 800, 869
DpnII	GATC	8 cut(s)	175, 383, 632, 667, 741, 787, 798, 867
DriI	GACNNNNNGTC	1 cut(s)	15
EaeI	YGGCCR	2 cut(s)	211, 876
Eam1104I	CTCTTC	1 cut(s)	857
Eam1105I	GACNNNNNGTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	857
Eco130I	CCWWGG	4 cut(s)	192, 540, 781, 886
Eco147I	AGGCCT	1 cut(s)	40
Eco47I	GGWCC	3 cut(s)	91, 328, 890
Eco88I	CYCGRG	1 cut(s)	586
EcoRII	CCWGG	3 cut(s)	87, 391, 670
EcoT14I	CCWWGG	4 cut(s)	192, 540, 781, 886
ErhI	CCWWGG	4 cut(s)	192, 540, 781, 886
Esp3I	CGTCTC	1 cut(s)	2
FaeI	CATG	6 cut(s)	218, 257, 544, 757, 830, 890
FaqI	GGGAC	1 cut(s)	390
FatI	CATG	6 cut(s)	214, 253, 540, 753, 826, 886
FblI	GTMKAC	2 cut(s)	108, 510
Fnu4HI	GCNGC	1 cut(s)	997
FokI	GGATG	2 cut(s)	67, 414
Fsp4HI	GCNGC	1 cut(s)	997
GluI	GCNGC	1 cut(s)	997
HaeIII	GGCC	5 cut(s)	40, 197, 213, 711, 878
HapII	CCGG	1 cut(s)	917
Hin1II	CATG	6 cut(s)	218, 257, 544, 757, 830, 890
HincII	GTYRAC	3 cut(s)	109, 751, 991
HindII	GTYRAC	3 cut(s)	109, 751, 991
HindIII	AAGCTT	1 cut(s)	578
HinfI	GANTC	5 cut(s)	366, 584, 902, 938, 1021
HpaI	GTTAAC	2 cut(s)	751, 991
HpaII	CCGG	1 cut(s)	917
HphI	GGTGA	2 cut(s)	430, 935
Hpy166II	GTNNAC	5 cut(s)	109, 511, 751, 847, 991
Hpy188I	TCNGA	6 cut(s)	172, 265, 301, 371, 632, 1038
Hpy188III	TCNNGA	5 cut(s)	179, 431, 695, 794, 1025
Hpy8I	GTNNAC	5 cut(s)	109, 511, 751, 847, 991
Hpy99I	CGWCG	1 cut(s)	1004
HpyAV	CCTTC	2 cut(s)	94, 903
HpyCH4III	ACNGT	4 cut(s)	56, 148, 443, 515
HpyCH4IV	ACGT	1 cut(s)	699
HpyCH4V	TGCA	2 cut(s)	425, 715
HpyF10VI	GCNNNNNNNGC	2 cut(s)	219, 455
HpyF3I	CTNAG	4 cut(s)	6, 432, 497, 871
HpySE526I	ACGT	1 cut(s)	699
Hsp92II	CATG	6 cut(s)	218, 257, 544, 757, 830, 890
KspAI	GTTAAC	2 cut(s)	751, 991
Kzo9I	GATC	8 cut(s)	175, 383, 632, 667, 741, 787, 798, 867
MaeII	ACGT	1 cut(s)	699
MalI	GATC	8 cut(s)	177, 385, 634, 669, 743, 789, 800, 869
MboI	GATC	8 cut(s)	175, 383, 632, 667, 741, 787, 798, 867
MboII	GAAGA	6 cut(s)	229, 298, 378, 491, 563, 874
MflI	RGATCY	2 cut(s)	798, 867
MlsI	TGGCCA	2 cut(s)	213, 878
MluCI	AATT	2 cut(s)	625, 1032
MluNI	TGGCCA	2 cut(s)	213, 878
MlyI	GAGTC	4 cut(s)	578, 896, 947, 1030
MmeI	TCCRAC	2 cut(s)	338, 879
MnlI	CCTC	5 cut(s)	217, 319, 463, 858, 979
Mox20I	TGGCCA	2 cut(s)	213, 878
MroXI	GAANNNNTTC	1 cut(s)	1032
MscI	TGGCCA	2 cut(s)	213, 878
MseI	TTAA	5 cut(s)	414, 576, 750, 803, 990
MslI	CAYNNNNRTG	2 cut(s)	116, 650
Msp20I	TGGCCA	2 cut(s)	213, 878
MspA1I	CMGCKG	1 cut(s)	458
MspCI	CTTAAG	1 cut(s)	413
MspI	CCGG	1 cut(s)	917
MspR9I	CCNGG	3 cut(s)	89, 393, 672
Mva1269I	GAATGC	1 cut(s)	560
MvaI	CCWGG	3 cut(s)	89, 393, 672
MwoI	GCNNNNNNNGC	2 cut(s)	219, 455
NcoI	CCATGG	2 cut(s)	540, 886
NdeII	GATC	8 cut(s)	175, 383, 632, 667, 741, 787, 798, 867
NlaIII	CATG	6 cut(s)	218, 257, 544, 757, 830, 890
NlaIV	GGNNCC	2 cut(s)	643, 921
NspI	RCATGY	1 cut(s)	757
OliI	CACNNNNGTG	1 cut(s)	116
PceI	AGGCCT	1 cut(s)	40
PcsI	WCGNNNNNNNCGW	2 cut(s)	902, 999
PctI	GAATGC	1 cut(s)	560
PdmI	GAANNNNTTC	1 cut(s)	1032
PfeI	GAWTC	1 cut(s)	366
PfoI	TCCNGGA	1 cut(s)	87
PkrI	GCNGC	1 cut(s)	998
PleI	GAGTC	4 cut(s)	578, 896, 946, 1029
PpsI	GAGTC	4 cut(s)	578, 896, 946, 1029
Psp6I	CCWGG	3 cut(s)	87, 391, 670
PspGI	CCWGG	3 cut(s)	87, 391, 670
PspN4I	GGNNCC	2 cut(s)	643, 921
PspPI	GGNCC	3 cut(s)	91, 328, 890
PsuI	RGATCY	2 cut(s)	798, 867
PvuII	CAGCTG	1 cut(s)	458
RsaI	GTAC	3 cut(s)	58, 437, 818
RsaNI	GTAC	3 cut(s)	57, 436, 817
RseI	CAYNNNNRTG	2 cut(s)	116, 650
SalI	GTCGAC	1 cut(s)	107
SaqAI	TTAA	5 cut(s)	414, 576, 750, 803, 990
SatI	GCNGC	1 cut(s)	997
Sau3AI	GATC	8 cut(s)	175, 383, 632, 667, 741, 787, 798, 867
Sau96I	GGNCC	3 cut(s)	91, 328, 890
SchI	GAGTC	4 cut(s)	578, 896, 947, 1030
ScrFI	CCNGG	3 cut(s)	89, 393, 672
SinI	GGWCC	3 cut(s)	91, 328, 890
SmiMI	CAYNNNNRTG	2 cut(s)	116, 650
SmlI	CTYRAG	2 cut(s)	413, 794
SmoI	CTYRAG	2 cut(s)	413, 794
Sse9I	AATT	2 cut(s)	625, 1032
SseBI	AGGCCT	1 cut(s)	40
SsiI	CCGC	1 cut(s)	996
SspI	AATATT	1 cut(s)	485
StuI	AGGCCT	1 cut(s)	40
StyD4I	CCNGG	3 cut(s)	87, 391, 670
StyI	CCWWGG	4 cut(s)	192, 540, 781, 886
TaaI	ACNGT	4 cut(s)	56, 148, 443, 515
TaiI	ACGT	1 cut(s)	702
TaqI	TCGA	5 cut(s)	108, 324, 382, 594, 1019
TaqII	GACCGA	1 cut(s)	345
TasI	AATT	2 cut(s)	625, 1032
TatI	WGTACW	1 cut(s)	816
TauI	GCSGC	1 cut(s)	999
TfiI	GAWTC	1 cut(s)	366
Tru1I	TTAA	5 cut(s)	414, 576, 750, 803, 990
Tru9I	TTAA	5 cut(s)	414, 576, 750, 803, 990
TscAI	CASTG	4 cut(s)	27, 446, 472, 879
TspDTI	ATGAA	3 cut(s)	623, 763, 821
TspGWI	ACGGA	1 cut(s)	332
TspRI	CASTG	4 cut(s)	27, 446, 472, 879
Vha464I	CTTAAG	1 cut(s)	413
VpaK11BI	GGWCC	3 cut(s)	91, 328, 890
XapI	RAATTY	1 cut(s)	1032
XceI	RCATGY	1 cut(s)	757
XcmI	CCANNNNNNNNNTGG	1 cut(s)	668
XmiI	GTMKAC	2 cut(s)	108, 510
XmnI	GAANNNNTTC	1 cut(s)	1032

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.