Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005477

Physical Location & Seq

Genomic Coordinates Forward (+)

36298990 .. 36299844

Gene Structure 855 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0226200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGTCAAGTCAGGATGCATTAGATGAACCTCAACCTGAGATTTCAGACACTAATTTGCAAGAGTCTGAAAGTGGCATCAATCAGTTGGAATATAATGGTATTAGATATGATAAGTTGGCTCCAGAAGACATTATAGGCGTGAAGTTTGTAACTGTTGAGGCAGCAGAGACTTTTTACTATGCTTATGCGAAAGCAATGGGTTTTGATGTTAGAAAGGATGGCAAGAGAACAAGTGCAAGGACTGGGAGAGTCACTATCCGCAAATGGGTTTGTTCTGCAGAGGGGGAAAGACTAGAGAAATATATGGACAACAATAATAATGTCCGTATGCCAAAGAAATTGACAAGGTGTCACTGCCCATGTTTGTTCAAGGTAAGGTACTTCAAGGAGAAGAACTCGTATGTCGTAGTTGATTTCAAAACAGATCATTCACATGATCTTGCACAACCACAGGAGTCTCATTTTCTTAGGTCACATCGGTCTGTCCCAGATTCTCATTTAGCTTTAGCCACATCTATGCGGAGAGTATCCATTAAGACTTGTCATGCATATCAATACATGGCTGACATATCTGGAGGGTTTGCGAATGTTGGTTTCAAAATGAAAGACTTGTACAATAAATTGGACTCGAGTCAACGTGAAATTGTACTTGAAGGGGATGCAAAAGCTACACTTGCCTATCTTGAAGGAAAAGCAGCTGAAGATAAGAAATTATTTTGCAAGTACAGCACAGATGAGAGTAACAGGTTGGCCAATTTATTTTGGAGAGACTCAACTTCATTGCTAGATTATTGTTGCTTTGGGGATGTTTTGGTATTTGGTAGATCTTTTAACTGCAAAACTTATGGAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007127 GO:0007135 GO:0008150 GO:0008608 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464 GO:0045132 GO:0045143 GO:0045144 GO:0048285 GO:0051177 GO:0051276 GO:0051316 GO:0051321 GO:0051455 GO:0051754 GO:0061982 GO:0061983 GO:0070192 GO:0070601 GO:0071840 GO:0098813 GO:0140013 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

STAG

Protein Analysis

284

Amino Acids

32.41

Weight (kDa)

7.99

Isoelectric Point (pI)

43.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	57 - 148	1.4e-16	FAR1 DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47980
fragaria_vesca	FvH4_2g24570 FvH4_2g24570 FvH4_2g24570 FvH4_2g24570 FvH4_2g24570 FvH4_2g24570
malus_domestica	MD11G1296700.v1.1
prunus_persica	Prupe.8G250900_v2.0.a1 Prupe.8G250900_v2.0.a1 Prupe.8G250900_v2.0.a1 Prupe.8G250900_v2.0.a1 Prupe.8G250900_v2.0.a1 Prupe.8G250900_v2.0.a1
pyrus_communis	pycom11g26100
rosa_chinensis	RchiOBHm_Chr6g0292391
rosa_laevigata	RLG00000012032
rosa_multiflora	Rmu_sc0012226.1_g000001 Rmu_sc0023540.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026580 Rroxscaffold_7G00175100
rosa_rugosa	Rorug06G0226100 Rorug06G0226200 Rorug06G0226300
rosa_samantha	Rh6AG339600 Rh6BG346800 Rh6CG353600 Rh6DG339600
rosa_wichuraiana	Rw6G029550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	259, 520
AcoI	YGGCCR	1 cut(s)	750
AcuI	CTGAAG	1 cut(s)	720
AfaI	GTAC	4 cut(s)	380, 614, 648, 725
AfiI	CCNNNNNNNGG	1 cut(s)	265
AgsI	TTSAA	6 cut(s)	370, 385, 418, 598, 653, 686
AhdI	GACNNNNNGTC	1 cut(s)	348
AluBI	AGCT	3 cut(s)	503, 668, 698
AluI	AGCT	3 cut(s)	503, 668, 698
Alw26I	GTCTC	3 cut(s)	161, 462, 762
Ama87I	CYCGRG	1 cut(s)	628
AoxI	GGCC	1 cut(s)	750
ApeKI	GCWGC	2 cut(s)	161, 695
AvaI	CYCGRG	1 cut(s)	628
BalI	TGGCCA	1 cut(s)	752
BbsI	GAAGAC	1 cut(s)	132
BbvI	GCAGC	2 cut(s)	173, 707
BccI	CCATC	1 cut(s)	212
BciVI	GTATCC	1 cut(s)	538
BcoDI	GTCTC	3 cut(s)	161, 462, 762
BfaI	CTAG	2 cut(s)	293, 785
BfmI	CTRYAG	1 cut(s)	276
BfuI	GTATCC	1 cut(s)	538
BglII	AGATCT	1 cut(s)	824
BisI	GCNGC	2 cut(s)	162, 696
BlsI	GCNGC	2 cut(s)	163, 697
BmeRI	GACNNNNNGTC	1 cut(s)	348
BmeT110I	CYCGRG	1 cut(s)	628
BmiI	GGNNCC	1 cut(s)	120
BmrI	ACTGGG	1 cut(s)	252
BmsI	GCATC	3 cut(s)	4, 84, 649
BmuI	ACTGGG	1 cut(s)	252
BoxI	GACNNNNGTC	1 cut(s)	630
BpiI	GAAGAC	1 cut(s)	132
BplI	GAGNNNNNCTC	2 cut(s)	380, 412
BpmI	CTGGAG	2 cut(s)	105, 594
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
Bse1I	ACTGG	1 cut(s)	247
Bse3DI	GCAATG	2 cut(s)	201, 779
BseGI	GGATG	4 cut(s)	19, 223, 664, 811
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseMI	GCAATG	2 cut(s)	201, 779
BseMII	CTCAG	1 cut(s)	27
BseNI	ACTGG	1 cut(s)	247
BseXI	GCAGC	2 cut(s)	173, 707
BshFI	GGCC	1 cut(s)	752
BsiHKCI	CYCGRG	1 cut(s)	628
BslFI	GGGAC	1 cut(s)	470
BslI	CCNNNNNNNGG	1 cut(s)	265
BsmAI	GTCTC	3 cut(s)	161, 462, 762
BsmFI	GGGAC	1 cut(s)	470
BsnI	GGCC	1 cut(s)	752
BsoBI	CYCGRG	1 cut(s)	628
Bsp1407I	TGTACA	1 cut(s)	612
Bsp143I	GATC	3 cut(s)	424, 436, 824
BspACI	CCGC	2 cut(s)	259, 520
BspANI	GGCC	1 cut(s)	752
BspCNI	CTCAG	1 cut(s)	28
BspLI	GGNNCC	1 cut(s)	120
BspMAI	CTGCAG	1 cut(s)	280
BsrDI	GCAATG	2 cut(s)	201, 779
BsrGI	TGTACA	1 cut(s)	612
BsrI	ACTGG	1 cut(s)	247
BssMI	GATC	3 cut(s)	424, 436, 824
Bst4CI	ACNGT	1 cut(s)	154
BstAUI	TGTACA	1 cut(s)	612
BstDEI	CTNAG	2 cut(s)	36, 467
BstF5I	GGATG	4 cut(s)	19, 223, 664, 811
BstKTI	GATC	3 cut(s)	427, 439, 827
BstMAI	GTCTC	3 cut(s)	161, 462, 762
BstMBI	GATC	3 cut(s)	424, 436, 824
BstMWI	GCNNNNNNNGC	2 cut(s)	674, 726
BstPAI	GACNNNNGTC	1 cut(s)	630
BstSFI	CTRYAG	1 cut(s)	276
BstV1I	GCAGC	2 cut(s)	173, 707
BstV2I	GAAGAC	1 cut(s)	132
BstX2I	RGATCY	1 cut(s)	824
BstYI	RGATCY	1 cut(s)	824
BsuI	GTATCC	1 cut(s)	538
BsuRI	GGCC	1 cut(s)	752
BtsCI	GGATG	4 cut(s)	19, 223, 664, 811
BtsI	GCAGTG	1 cut(s)	352
BtsIMutI	CAGTG	1 cut(s)	352
Csp6I	GTAC	4 cut(s)	379, 613, 647, 724
CviAII	CATG	4 cut(s)	360, 434, 545, 559
CviJI	RGCY	7 cut(s)	119, 503, 509, 563, 668, 698, 752
CviKI_1	RGCY	7 cut(s)	119, 503, 509, 563, 668, 698, 752
CviQI	GTAC	4 cut(s)	379, 613, 647, 724
DdeI	CTNAG	2 cut(s)	36, 467
DpnI	GATC	3 cut(s)	426, 438, 826
DpnII	GATC	3 cut(s)	424, 436, 824
DriI	GACNNNNNGTC	1 cut(s)	348
EaeI	YGGCCR	1 cut(s)	750
Eam1105I	GACNNNNNGTC	1 cut(s)	348
Eco57I	CTGAAG	1 cut(s)	720
Eco88I	CYCGRG	1 cut(s)	628
EcoT22I	ATGCAT	2 cut(s)	19, 550
FaeI	CATG	4 cut(s)	363, 437, 548, 562
FalI	AAGNNNNNCTT	2 cut(s)	657, 689
FaqI	GGGAC	1 cut(s)	470
FatI	CATG	4 cut(s)	359, 433, 544, 558
Fnu4HI	GCNGC	2 cut(s)	162, 696
FokI	GGATG	4 cut(s)	26, 230, 671, 818
Fsp4HI	GCNGC	2 cut(s)	162, 696
FspBI	CTAG	2 cut(s)	293, 785
GluI	GCNGC	2 cut(s)	162, 696
GsuI	CTGGAG	2 cut(s)	105, 594
HaeIII	GGCC	1 cut(s)	752
Hin1II	CATG	4 cut(s)	363, 437, 548, 562
HincII	GTYRAC	1 cut(s)	635
HindII	GTYRAC	1 cut(s)	635
HinfI	GANTC	7 cut(s)	62, 249, 455, 491, 626, 631, 770
Hpy166II	GTNNAC	1 cut(s)	635
Hpy188I	TCNGA	2 cut(s)	46, 67
Hpy188III	TCNNGA	4 cut(s)	11, 122, 573, 683
Hpy8I	GTNNAC	1 cut(s)	635
HpyAV	CCTTC	2 cut(s)	647, 680
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4IV	ACGT	1 cut(s)	637
HpyCH4V	TGCA	9 cut(s)	17, 58, 236, 278, 443, 548, 662, 720, 837
HpyF10VI	GCNNNNNNNGC	2 cut(s)	674, 726
HpyF3I	CTNAG	2 cut(s)	36, 467
HpySE526I	ACGT	1 cut(s)	637
Hsp92II	CATG	4 cut(s)	363, 437, 548, 562
Kzo9I	GATC	3 cut(s)	424, 436, 824
LmnI	GCTCC	1 cut(s)	124
LpnPI	CCDG	7 cut(s)	48, 135, 228, 437, 501, 558, 730
Lsp1109I	GCAGC	2 cut(s)	173, 707
LweI	GCATC	3 cut(s)	4, 84, 649
MaeI	CTAG	2 cut(s)	293, 785
MaeII	ACGT	1 cut(s)	637
MaeIII	GTNAC	5 cut(s)	148, 250, 350, 471, 740
MalI	GATC	3 cut(s)	426, 438, 826
MboI	GATC	3 cut(s)	424, 436, 824
MboII	GAAGA	3 cut(s)	137, 403, 713
MflI	RGATCY	1 cut(s)	824
MlsI	TGGCCA	1 cut(s)	752
MluCI	AATT	6 cut(s)	52, 338, 620, 642, 710, 754
MluNI	TGGCCA	1 cut(s)	752
MlyI	GAGTC	6 cut(s)	71, 258, 464, 620, 640, 764
MmeI	TCCRAC	1 cut(s)	66
MnlI	CCTC	5 cut(s)	39, 151, 274, 569, 842
Mox20I	TGGCCA	1 cut(s)	752
Mph1103I	ATGCAT	2 cut(s)	19, 550
MscI	TGGCCA	1 cut(s)	752
MseI	TTAA	2 cut(s)	534, 831
MslI	CAYNNNNRTG	2 cut(s)	432, 515
Msp20I	TGGCCA	1 cut(s)	752
MspA1I	CMGCKG	1 cut(s)	698
MwoI	GCNNNNNNNGC	2 cut(s)	674, 726
NdeII	GATC	3 cut(s)	424, 436, 824
NlaIII	CATG	4 cut(s)	363, 437, 548, 562
NlaIV	GGNNCC	1 cut(s)	120
NmuCI	GTSAC	3 cut(s)	250, 350, 471
NsiI	ATGCAT	2 cut(s)	19, 550
PaeR7I	CTCGAG	1 cut(s)	628
PfeI	GAWTC	1 cut(s)	491
PkrI	GCNGC	2 cut(s)	163, 697
PleI	GAGTC	6 cut(s)	70, 257, 463, 620, 639, 764
PpsI	GAGTC	6 cut(s)	70, 257, 463, 620, 639, 764
PshAI	GACNNNNGTC	1 cut(s)	630
PspN4I	GGNNCC	1 cut(s)	120
PspXI	VCTCGAGB	1 cut(s)	628
PstI	CTGCAG	1 cut(s)	280
PsuI	RGATCY	1 cut(s)	824
PvuII	CAGCTG	1 cut(s)	698
RsaI	GTAC	4 cut(s)	380, 614, 648, 725
RsaNI	GTAC	4 cut(s)	379, 613, 647, 724
RseI	CAYNNNNRTG	2 cut(s)	432, 515
SaqAI	TTAA	2 cut(s)	534, 831
SatI	GCNGC	2 cut(s)	162, 696
Sau3AI	GATC	3 cut(s)	424, 436, 824
SchI	GAGTC	6 cut(s)	71, 258, 464, 620, 640, 764
SfaNI	GCATC	3 cut(s)	4, 84, 649
SfcI	CTRYAG	1 cut(s)	276
Sfr274I	CTCGAG	1 cut(s)	628
SlaI	CTCGAG	1 cut(s)	628
SmiMI	CAYNNNNRTG	2 cut(s)	432, 515
SmlI	CTYRAG	1 cut(s)	628
SmoI	CTYRAG	1 cut(s)	628
Sse9I	AATT	6 cut(s)	52, 338, 620, 642, 710, 754
SsiI	CCGC	2 cut(s)	259, 520
SspMI	CTAG	2 cut(s)	293, 785
TaaI	ACNGT	1 cut(s)	154
TaiI	ACGT	1 cut(s)	640
TaqI	TCGA	1 cut(s)	629
TaqII	GACCGA	1 cut(s)	468
TasI	AATT	6 cut(s)	52, 338, 620, 642, 710, 754
TatI	WGTACW	3 cut(s)	612, 646, 723
TfiI	GAWTC	1 cut(s)	491
Tru1I	TTAA	2 cut(s)	534, 831
Tru9I	TTAA	2 cut(s)	534, 831
TscAI	CASTG	1 cut(s)	359
TseFI	GTSAC	3 cut(s)	250, 350, 471
TseI	GCWGC	2 cut(s)	161, 695
Tsp45I	GTSAC	3 cut(s)	250, 350, 471
TspDTI	ATGAA	3 cut(s)	39, 617, 768
TspGWI	ACGGA	1 cut(s)	314
TspRI	CASTG	1 cut(s)	359
XhoI	CTCGAG	1 cut(s)	628
XspI	CTAG	2 cut(s)	293, 785
Zsp2I	ATGCAT	2 cut(s)	19, 550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.