Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0005477

Physical Location & Seq

Genomic Coordinates Reverse (-)

54329324 .. 54337346

Gene Structure 8023 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG339600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3345 bp

ATGGAGGAACCAGCCACCGGCGGCCGCCCGAAGAGGACTAGGGCTCAGACTCGAACCACCACTGAGAACAACGCTAGTGATGCGAGTGAACACGTGGACCGCGAGAGCTCGCCGGACGATTTCGAAGCGCCTCGTCCTAAAGCTAAACGAGGTCGCCCTCCCAGTGGCTCCACCGCGGCGCCGCCCAAAGCCTCCGCTCTCACTCTGATTGAGGTCGTCAAGGGCAACGGGAAACTTATTCCTCAGGCGGTCAAGCTCTGGGTTGAGCGGTACGAAAAGGATGCTAAACCTGCTACTGTTGAGCTCTTGACAATGCTGTTCGAGGCATGTGGAGCTAAGTATCATATTAAAGAAGAGTTGCTGGATGAGACTAATGTTGACGATGTCGTGGTTGCTCTTGTCGAGCTTGCTAGAAGTGGTAACGTGGATGATTACCAAAGTTCAAAAAAGGAGTTTAAAAACATGAAGGACAATCTCCAATCATTCTGGGATAAGTTGGTCTGCGAATGTCAACACGGGCCATTATTTGATCAGATTTTGTTCGAGAAGTGCATGGGCTATATAATTGCTTTGTCATGCACTCCTCCAAGAGTTTATCGCCAAACTGCTACTTTGATGGGTCTCCAACTTGTCACTTCATTCATAACTGTTGCTAAAACACTTGGTGTTCAGCGTGAAACTACTCGAAGACAATTAGAGGCTGAAAAAAAGAAACAAGCTGAAGGACCTCGTGTGGAGTCACTGAACAAGAGGTTCTCGATGACTCATGAAAACATAACTATATTAGAGCAGATGATGCGCAATATATTTCAAGGGTTATTTGTGCATCGCTACCGAGACATTGAACCAAATATTCGGACGTCGTGTATAGAGGCACTCGGCGTGTGGATTTTGTCATATCCATCAATGTTCTTGCAGGATTTGTACTTGAAGTATCTTGGATGGACATTGAATGACAAAAATGCTGGTGTAAGAAAAGCATCTGTGCTTGCATTGCAAAATCTTTATGAGGTTGATGATAATGTGCCAACTCTGGGCCTATTCACTGAAAGATTTTCTACTCGGATGATTGAGCTTGCTGATGACATTGATATTTCTGTGGCTGTATCTGCCATTGGCCTTGTTAAACAGCTTTTAAGACATCAGCTTCTACCAGATGATGACTTAGGTCCTTTATATGATTTGCTTATTGATGATCCAGCAGAGATCAGGCATGCTATAGGGGCATTAGTGTATGAACACTTGATTTCTCAGAAGTTCATTAGTTCCCAGTCTGGTGCAAAAGGTGTTGAGAACAATTCTTCTGAGGTCCAGCTTGGCAGAATGTTGCAAATTCTAAGAGAGTTCTCTGCAGATCCAATTCTTAGCGTTTATGTAATTGATGATGTTTGGGAGTACATGAATGCCATGAAGGATTGGAAGTGTATTATCTCAATGCTCTTGGATGAGAATCCACTGATTGAGCTTACTGATGAGGATGCAACAAACTTGGTACGGCTTCTTTCTGCATCTGTCAAAAAGGCTGTAGGAGAGAGGATAGTTCCTGCTACTGATAATCGAAAGCCATACTACACTAAAGCTCAAAAAGATGTATTTGAGCACAATAAACAGGATATAACTCTTGCCATGATGAAGAACTATCCACTACTTCTCCGTAAGTTCATGGCAGACAAAGCAAAAATACCATCACTGGTTGACATTATTCTACACATGAATCTTGGGCTATATTCCAAGAGGAGGCAGGAGCAGAATTTTGAAACCGTCCTTCAACTGATCAAAGAGGCATTTTTCAAACATGGTGAGAAGGAGGCGCTGAGATCTTGCGCAAATGCTATCATGCTTTGTTCAACAGACAGTCAAGGGGAGCTAAAAGATACGGCCCGTAATTTAGTAAAGGAACTTCATGATGAGCTTATTCATAATAAGCTTAAACCTGCGATGAAAGAAGTGGCGGATGGTGGTGATGAATATCCTCTTCTTGTAAATTTGAAGAGAATGTATGAGCTTCAATTGTCAGGAAATGTGCCTATCGAGAGTTTGTATGAAGATATGGTCTCAACTCTTCAGAGCTATACAAACAAGGATGATCAGGTTGTCACTTTTCTGCTTCTCAACATGTATATGCATGTGCAATGGTCTCTGCATGCCATCATACATAGTCCTACTATCTCAGAGGCATCTTTATCTTCTATATTAGCGAAACGTGATTCTTTGTTAGAGCGACTAGAGTACATCCTTAACAGCTGTCTTGAAATGGAGGGTAATCGCTGCAATCAGCTAGCACGCTGGGTCTGTGTTATACTCACTGATTTGTCTAGACTGTTCAAAAAGACAAACTTTGCTTCGTCGAAGCTGGAAAAATTAGGATATTCTCCAGATGCATTGGTTCTTCAGAAGTTTTGGAAACTTTGTGTGCAGCAGCTCAGTATTTCAGATGAGACGGAAGATGACAATGGGAACAAAGAGTATATTGAGGAGACAAATAGAGATACTGTCATGATGGCTGCTGTACGGTTAGCTGTTACTGATAAAGTTTATAAGGAGTACCTGGGTCCAGAGATTATTTCTAGATTTGTGATGCATGGTACAAGTGTAGCGGAGATAGTTAAGCATCTGATAACTTTTCTGAAGAAGAATGATGATGATCTTCCGAAAACTTTCTTGGAAGCGCTGAAAATGGCCTACCATCGGTATATGGTTGGACTATCTAGAAGTGAAGATGAATCTTTAGCAAGCAAGCATTTTCTAGAGTTTCAAGAACTAGCTGCTCAGCTTTCTGGGACATTTATAGGTGCTTCCAAGAACAAGCACAAATCAGACATTTTAAAAATTGTTAACGAGGGAATTGAATATGCTTTTATAGACGCTCCAAAGCAGTTGTCCTTTCTGGAAGGTGCTGTGCTCCATTTTGTGTCCAAATTGCCGACACCTGATATTCTGGAGATTAACGTCAATATTCAAAATCGAACGGAGAATGTAAATATGGATGAAGATCCCAGTGGCTGGCGTCCTTATCACACATTCGTTCAGACTTTGCGGGAAAAATTTGCAAAGATTGAAGGTATCCAAGAAGAAAAGGACGGGACCTCTGTAAGGCGCAGGGGTCGTCCACGGAAAAGGCGTAATATACAGGGAAAGAGGCTGTTTGATGATCATGGTTCAAGTGAAGAAGAGGATTCAATTAGTGGATCTGACCATGAAAATGCTCAAGATGAAGAAGAACAACAAGATGAGGATGAAGATGATGATGACGATGAAGATGTTCCTTTGATAAATCAAATTAGGTCATCATCCAAGTTGAGATCGCTGAAAGTTTCACGAGAGGGAAACAAAGGCCAGACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007127 GO:0007135 GO:0008150 GO:0008608 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464 GO:0045132 GO:0045143 GO:0045144 GO:0048285 GO:0051177 GO:0051276 GO:0051316 GO:0051321 GO:0051455 GO:0051754 GO:0061982 GO:0061983 GO:0070192 GO:0070601 GO:0071840 GO:0098813 GO:0140013 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

STAG

Protein Analysis

1114

Amino Acids

126.77

Weight (kDa)

5.47

Isoelectric Point (pI)

50.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STAG	PF08514	146 - 250	2.6e-27	STAG domain
SCD	PF21581	279 - 352	1.5e-29	Stromalin conservative domain
HEAT_SCC3-SA	PF24571	458 - 712	1.4e-70	Cohesin subunit SCC3/SA, HEAT-repeats domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47980
fragaria_vesca	FvH4_2g24570 FvH4_2g24570 FvH4_2g24570 FvH4_2g24570 FvH4_2g24570 FvH4_2g24570
malus_domestica	MD11G1296700.v1.1
prunus_persica	Prupe.8G250900_v2.0.a1 Prupe.8G250900_v2.0.a1 Prupe.8G250900_v2.0.a1 Prupe.8G250900_v2.0.a1 Prupe.8G250900_v2.0.a1 Prupe.8G250900_v2.0.a1
pyrus_communis	pycom11g26100
rosa_chinensis	RchiOBHm_Chr6g0292391
rosa_laevigata	RLG00000012032
rosa_multiflora	Rmu_sc0012226.1_g000001 Rmu_sc0023540.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026580 Rroxscaffold_7G00175100
rosa_rugosa	Rorug06G0226100 Rorug06G0226200 Rorug06G0226300
rosa_samantha	Rh6AG339600 Rh6BG346800 Rh6CG353600 Rh6DG339600
rosa_wichuraiana	Rw6G029550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2538
AatII	GACGTC	1 cut(s)	863
Acc16I	TGCGCA	2 cut(s)	800, 1825
Acc36I	ACCTGC	2 cut(s)	298, 1942
AccB1I	GGYRCC	1 cut(s)	178
AccB7I	CCANNNNNTGG	1 cut(s)	3003
AccBSI	CCGCTC	2 cut(s)	197, 268
AccII	CGCG	2 cut(s)	102, 176
AclWI	GGATC	4 cut(s)	1190, 1349, 2987, 3196
AcoI	YGGCCR	1 cut(s)	22
AcsI	RAATTY	4 cut(s)	1332, 1750, 1984, 3044
AcuI	CTGAAG	4 cut(s)	741, 2048, 2375, 2648
AcvI	CACGTG	1 cut(s)	94
AcyI	GRCGYC	3 cut(s)	179, 860, 3007
AdeI	CACNNNGTG	1 cut(s)	665
AfaI	GTAC	8 cut(s)	272, 926, 1397, 1494, 2231, 2511, 2546, 2587
AfeI	AGCGCT	1 cut(s)	2670
AfiI	CCNNNNNNNGG	7 cut(s)	17, 164, 1034, 1737, 2688, 3003, 3093
AflIII	ACRYGT	2 cut(s)	91, 2115
AjnI	CCWGG	1 cut(s)	2547
AjuI	GAANNNNNNNTTGG	2 cut(s)	2645, 2677
Alw21I	GWGCWC	4 cut(s)	110, 306, 1602, 2904
Alw26I	GTCTC	7 cut(s)	362, 626, 831, 2059, 2142, 2432, 2471
AlwI	GGATC	4 cut(s)	1190, 1349, 2987, 3196
AlwNI	CAGNNNCTG	1 cut(s)	3003
Aor51HI	AGCGCT	1 cut(s)	2670
AoxI	GGCC	7 cut(s)	22, 518, 1036, 1117, 1878, 2679, 3334
ApeKI	GCWGC	5 cut(s)	2268, 2416, 2419, 2504, 2765
ApoI	RAATTY	4 cut(s)	1332, 1750, 1984, 3044
ArsI	GACNNNNNNTTYG	2 cut(s)	2864, 2896
Asp700I	GAANNNNTTC	2 cut(s)	2657, 3261
AspLEI	GCGC	7 cut(s)	130, 181, 801, 1813, 1826, 2671, 3099
AspS9I	GGNCC	9 cut(s)	97, 518, 725, 1036, 1169, 1309, 1879, 2552, 3084
AsuHPI	GGTGA	2 cut(s)	1811, 1973
AsuII	TTCGAA	1 cut(s)	123
AsuNHI	GCTAGC	1 cut(s)	2278
AvaII	GGWCC	6 cut(s)	97, 725, 1169, 1309, 2552, 3084
AxyI	CCTNAGG	1 cut(s)	243
BaeI	ACNNNNGTAYC	2 cut(s)	2577, 2610
BanI	GGYRCC	1 cut(s)	178
BanII	GRGCYC	3 cut(s)	46, 110, 306
BarI	GAAGNNNNNNTAC	2 cut(s)	1884, 1916
BauI	CACGAG	2 cut(s)	729, 3318
BbrPI	CACGTG	1 cut(s)	94
BbsI	GAAGAC	1 cut(s)	694
Bbv12I	GWGCWC	4 cut(s)	110, 306, 1602, 2904
BbvI	GCAGC	5 cut(s)	2255, 2428, 2431, 2491, 2752
BccI	CCATC	8 cut(s)	610, 910, 936, 1693, 1949, 2156, 2494, 2694
BceAI	ACGGC	2 cut(s)	1511, 1893
BcgI	CGANNNNNNTGC	2 cut(s)	263, 297
BciT130I	CCWGG	1 cut(s)	2549
BciVI	GTATCC	1 cut(s)	3074
BclI	TGATCA	4 cut(s)	529, 1773, 2086, 3151
BcoDI	GTCTC	7 cut(s)	362, 626, 831, 2059, 2142, 2432, 2471
BfmI	CTRYAG	3 cut(s)	1218, 1350, 1524
BfoI	RGCGCY	4 cut(s)	131, 182, 1814, 2672
BfuAI	ACCTGC	2 cut(s)	298, 1942
BfuI	GTATCC	1 cut(s)	3074
BglII	AGATCT	1 cut(s)	1817
BisI	GCNGC	9 cut(s)	22, 25, 177, 182, 2269, 2417, 2420, 2505, 2766
BlpI	GCTNAGC	1 cut(s)	2769
BlsI	GCNGC	9 cut(s)	23, 26, 178, 183, 2270, 2418, 2421, 2506, 2767
Bme1390I	CCNGG	1 cut(s)	2549
Bme18I	GGWCC	6 cut(s)	97, 725, 1169, 1309, 2552, 3084
BmgT120I	GGNCC	9 cut(s)	97, 518, 725, 1036, 1169, 1309, 1879, 2552, 3084
BmiI	GGNNCC	5 cut(s)	9, 169, 180, 2553, 3085
BmrFI	CCNGG	1 cut(s)	2549
BmrI	ACTGGG	3 cut(s)	156, 1264, 2991
BmtI	GCTAGC	1 cut(s)	2282
BmuI	ACTGGG	3 cut(s)	156, 1264, 2991
BoxI	GACNNNNGTC	1 cut(s)	1167
BpiI	GAAGAC	1 cut(s)	694
BpmI	CTGGAG	2 cut(s)	2358, 2960
Bpu1102I	GCTNAGC	1 cut(s)	2769
Bpu14I	TTCGAA	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	3192
BsaAI	YACGTR	1 cut(s)	94
BsaBI	GATNNNNATC	4 cut(s)	1449, 1968, 2643, 2991
BsaHI	GRCGYC	3 cut(s)	179, 860, 3007
BsaI	GGTCTC	3 cut(s)	626, 2059, 2142
BsaJI	CCNNGG	3 cut(s)	174, 2548, 3110
BsaXI	ACNNNNNCTCC	2 cut(s)	1635, 1665
Bsc4I	CCNNNNNNNGG	7 cut(s)	17, 164, 1034, 1737, 2688, 3003, 3093
Bse118I	RCCGGY	1 cut(s)	17
Bse1I	ACTGG	4 cut(s)	162, 1270, 1695, 2997
Bse21I	CCTNAGG	1 cut(s)	243
Bse3DI	GCAATG	2 cut(s)	992, 2138
Bse8I	GATNNNNATC	4 cut(s)	1449, 1968, 2643, 2991
BseBI	CCWGG	1 cut(s)	2549
BseDI	CCNNGG	3 cut(s)	174, 2548, 3110
BseJI	GATNNNNATC	4 cut(s)	1449, 1968, 2643, 2991
BseLI	CCNNNNNNNGG	7 cut(s)	17, 164, 1034, 1737, 2688, 3003, 3093
BseMI	GCAATG	2 cut(s)	992, 2138
BseMII	CTCAG	9 cut(s)	54, 59, 257, 1265, 1296, 1805, 2184, 2437, 2783
BseNI	ACTGG	4 cut(s)	162, 1270, 1695, 2997
BseRI	GAGGAG	3 cut(s)	573, 1750, 2489
BseX3I	CGGCCG	1 cut(s)	22
BseXI	GCAGC	5 cut(s)	2255, 2428, 2431, 2491, 2752
BseYI	CCCAGC	1 cut(s)	2286
BsgI	GTGCAG	1 cut(s)	2435
Bsh1236I	CGCG	2 cut(s)	102, 176
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	7 cut(s)	24, 520, 1038, 1119, 1880, 2681, 3336
BshNI	GGYRCC	1 cut(s)	178
BsiEI	CGRYCG	1 cut(s)	25
BsiHKAI	GWGCWC	4 cut(s)	110, 306, 1602, 2904
BsiSI	CCGG	2 cut(s)	18, 113
BslFI	GGGAC	2 cut(s)	2794, 3097
BslI	CCNNNNNNNGG	7 cut(s)	17, 164, 1034, 1737, 2688, 3003, 3093
BsmAI	GTCTC	7 cut(s)	362, 626, 831, 2059, 2142, 2432, 2471
BsmBI	CGTCTC	1 cut(s)	2432
BsmFI	GGGAC	2 cut(s)	2794, 3097
BsmI	GAATGC	1 cut(s)	1408
BsnI	GGCC	7 cut(s)	24, 520, 1038, 1119, 1880, 2681, 3336
Bso31I	GGTCTC	3 cut(s)	626, 2059, 2142
Bsp119I	TTCGAA	1 cut(s)	123
Bsp1286I	GDGCHC	5 cut(s)	46, 110, 306, 1602, 2904
Bsp1720I	GCTNAGC	1 cut(s)	2769
BspANI	GGCC	7 cut(s)	24, 520, 1038, 1119, 1880, 2681, 3336
BspCNI	CTCAG	9 cut(s)	55, 58, 256, 1264, 1297, 1806, 2183, 2436, 2782
BspFNI	CGCG	2 cut(s)	102, 176
BspHI	TCATGA	3 cut(s)	766, 1903, 2496
BspLI	GGNNCC	5 cut(s)	9, 169, 180, 2553, 3085
BspMAI	CTGCAG	1 cut(s)	1354
BspMI	ACCTGC	2 cut(s)	298, 1942
BspOI	GCTAGC	1 cut(s)	2282
BspPI	GGATC	4 cut(s)	1190, 1349, 2987, 3196
BspT104I	TTCGAA	1 cut(s)	123
BspT107I	GGYRCC	1 cut(s)	178
BspTNI	GGTCTC	3 cut(s)	626, 2059, 2142
BsrBI	CCGCTC	2 cut(s)	197, 268
BsrDI	GCAATG	2 cut(s)	992, 2138
BsrFI	RCCGGY	1 cut(s)	17
BsrI	ACTGG	4 cut(s)	162, 1270, 1695, 2997
BssAI	RCCGGY	1 cut(s)	17
BssECI	CCNNGG	3 cut(s)	174, 2548, 3110
BssNI	GRCGYC	3 cut(s)	179, 860, 3007
BssSI	CACGAG	2 cut(s)	729, 3318
Bst2BI	CACGAG	2 cut(s)	729, 3318
Bst2UI	CCWGG	1 cut(s)	2549
Bst4CI	ACNGT	7 cut(s)	298, 649, 1762, 1856, 2322, 2494, 2514
Bst6I	CTCTTC	6 cut(s)	26, 348, 1980, 1985, 2067, 3165
BstACI	GRCGYC	3 cut(s)	179, 860, 3007
BstAPI	GCANNNNNTGC	1 cut(s)	796
BstBAI	YACGTR	1 cut(s)	94
BstBI	TTCGAA	1 cut(s)	123
BstDSI	CCRYGG	2 cut(s)	174, 3110
BstENI	CCTNNNNNAGG	1 cut(s)	3091
BstFNI	CGCG	2 cut(s)	102, 176
BstH2I	RGCGCY	4 cut(s)	131, 182, 1814, 2672
BstHHI	GCGC	7 cut(s)	130, 181, 801, 1813, 1826, 2671, 3099
BstMAI	GTCTC	7 cut(s)	362, 626, 831, 2059, 2142, 2432, 2471
BstMCI	CGRYCG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	8 cut(s)	80, 290, 332, 796, 994, 1109, 1223, 1673
BstNI	CCWGG	1 cut(s)	2549
BstNSI	RCATGY	5 cut(s)	330, 1217, 2119, 2129, 2147
BstPAI	GACNNNNGTC	1 cut(s)	1167
BstSCI	CCNGG	1 cut(s)	2547
BstSFI	CTRYAG	3 cut(s)	1218, 1350, 1524
BstUI	CGCG	2 cut(s)	102, 176
BstV1I	GCAGC	5 cut(s)	2255, 2428, 2431, 2491, 2752
BstV2I	GAAGAC	1 cut(s)	694
BstX2I	RGATCY	4 cut(s)	1354, 1817, 2992, 3188
BstYI	RGATCY	4 cut(s)	1354, 1817, 2992, 3188
BstZI	CGGCCG	1 cut(s)	22
Bsu36I	CCTNAGG	1 cut(s)	243
BsuI	GTATCC	1 cut(s)	3074
BsuRI	GGCC	7 cut(s)	24, 520, 1038, 1119, 1880, 2681, 3336
BtgI	CCRYGG	2 cut(s)	174, 3110
BtgZI	GCGATG	2 cut(s)	812, 1952
BtsIMutI	CAGTG	8 cut(s)	60, 169, 740, 1044, 1454, 1688, 2304, 3004
BveI	ACCTGC	2 cut(s)	298, 1942
CaiI	CAGNNNCTG	1 cut(s)	3003
CciI	TCATGA	3 cut(s)	766, 1903, 2496
CciNI	GCGGCCGC	1 cut(s)	22
CfoI	GCGC	7 cut(s)	130, 181, 801, 1813, 1826, 2671, 3099
Cfr10I	RCCGGY	1 cut(s)	17
Cfr13I	GGNCC	9 cut(s)	97, 518, 725, 1036, 1169, 1309, 1879, 2552, 3084
Cfr42I	CCGCGG	1 cut(s)	177
CseI	GACGC	2 cut(s)	2873, 2996
Csp6I	GTAC	8 cut(s)	271, 925, 1396, 1493, 2230, 2510, 2545, 2586
CviQI	GTAC	8 cut(s)	271, 925, 1396, 1493, 2230, 2510, 2545, 2586
DinI	GGCGCC	1 cut(s)	180
DraI	TTTAAA	2 cut(s)	457, 2826
DraIII	CACNNNGTG	1 cut(s)	665
EaeI	YGGCCR	1 cut(s)	22
EagI	CGGCCG	1 cut(s)	22
Eam1104I	CTCTTC	6 cut(s)	26, 348, 1980, 1985, 2067, 3165
EarI	CTCTTC	6 cut(s)	26, 348, 1980, 1985, 2067, 3165
EciI	GGCGGA	1 cut(s)	1967
Ecl136II	GAGCTC	2 cut(s)	108, 304
EclXI	CGGCCG	1 cut(s)	22
Eco24I	GRGCYC	3 cut(s)	46, 110, 306
Eco31I	GGTCTC	3 cut(s)	626, 2059, 2142
Eco47I	GGWCC	6 cut(s)	97, 725, 1169, 1309, 2552, 3084
Eco47III	AGCGCT	1 cut(s)	2670
Eco52I	CGGCCG	1 cut(s)	22
Eco53kI	GAGCTC	2 cut(s)	108, 304
Eco57I	CTGAAG	4 cut(s)	741, 2048, 2375, 2648
Eco72I	CACGTG	1 cut(s)	94
Eco81I	CCTNAGG	1 cut(s)	243
EcoICRI	GAGCTC	2 cut(s)	108, 304
EcoNI	CCTNNNNNAGG	1 cut(s)	3091
EcoO109I	RGGNCCY	3 cut(s)	725, 1169, 3084
EcoRII	CCWGG	1 cut(s)	2547
EcoT22I	ATGCAT	3 cut(s)	2127, 2383, 2583
EcoT38I	GRGCYC	3 cut(s)	46, 110, 306
EgeI	GGCGCC	1 cut(s)	180
EheI	GGCGCC	1 cut(s)	180
Esp3I	CGTCTC	1 cut(s)	2432
FalI	AAGNNNNNCTT	2 cut(s)	2321, 2353
FaqI	GGGAC	2 cut(s)	2794, 3097
FauI	CCCGC	1 cut(s)	3030
FbaI	TGATCA	4 cut(s)	529, 1773, 2086, 3151
Fnu4HI	GCNGC	9 cut(s)	22, 25, 177, 182, 2269, 2417, 2420, 2505, 2766
FriOI	GRGCYC	3 cut(s)	46, 110, 306
Fsp4HI	GCNGC	9 cut(s)	22, 25, 177, 182, 2269, 2417, 2420, 2505, 2766
FspI	TGCGCA	2 cut(s)	800, 1825
GlaI	GCGC	7 cut(s)	129, 180, 800, 1812, 1825, 2670, 3098
GluI	GCNGC	9 cut(s)	22, 25, 177, 182, 2269, 2417, 2420, 2505, 2766
GsaI	CCCAGC	1 cut(s)	2290
GsuI	CTGGAG	2 cut(s)	2358, 2960
HaeII	RGCGCY	4 cut(s)	131, 182, 1814, 2672
HaeIII	GGCC	7 cut(s)	24, 520, 1038, 1119, 1880, 2681, 3336
HapII	CCGG	2 cut(s)	18, 113
HgaI	GACGC	2 cut(s)	2873, 2996
HhaI	GCGC	7 cut(s)	130, 181, 801, 1813, 1826, 2671, 3099
Hin1I	GRCGYC	3 cut(s)	179, 860, 3007
Hin6I	GCGC	7 cut(s)	128, 179, 799, 1811, 1824, 2669, 3097
HinP1I	GCGC	7 cut(s)	128, 179, 799, 1811, 1824, 2669, 3097
HincII	GTYRAC	4 cut(s)	379, 512, 1696, 2836
HindII	GTYRAC	4 cut(s)	379, 512, 1696, 2836
HindIII	AAGCTT	1 cut(s)	1925
HinfI	GANTC	8 cut(s)	49, 737, 763, 1450, 1714, 2207, 2723, 3176
HpaI	GTTAAC	1 cut(s)	2836
HpaII	CCGG	2 cut(s)	18, 113
HphI	GGTGA	2 cut(s)	1811, 1973
Hpy166II	GTNNAC	7 cut(s)	89, 97, 379, 512, 1696, 2836, 3110
Hpy8I	GTNNAC	7 cut(s)	89, 97, 379, 512, 1696, 2836, 3110
Hpy99I	CGWCG	2 cut(s)	865, 2350
HpyAV	CCTTC	7 cut(s)	460, 716, 1405, 1775, 1798, 2885, 3053
HpyCH4III	ACNGT	7 cut(s)	298, 649, 1762, 1856, 2322, 2494, 2514
HpyCH4IV	ACGT	6 cut(s)	93, 423, 860, 2203, 2949, 3341
HpyF10VI	GCNNNNNNNGC	8 cut(s)	80, 290, 332, 796, 994, 1109, 1223, 1673
HpySE526I	ACGT	6 cut(s)	93, 423, 860, 2203, 2949, 3341
Hsp92I	GRCGYC	3 cut(s)	179, 860, 3007
HspAI	GCGC	7 cut(s)	128, 179, 799, 1811, 1824, 2669, 3097
KasI	GGCGCC	1 cut(s)	178
Ksp22I	TGATCA	4 cut(s)	529, 1773, 2086, 3151
KspAI	GTTAAC	1 cut(s)	2836
KspI	CCGCGG	1 cut(s)	177
LmnI	GCTCC	6 cut(s)	173, 332, 1744, 1864, 2872, 2907
Lsp1109I	GCAGC	5 cut(s)	2255, 2428, 2431, 2491, 2752
MaeII	ACGT	6 cut(s)	93, 423, 860, 2203, 2949, 3341
MaeIII	GTNAC	5 cut(s)	419, 631, 738, 2095, 2521
MbiI	CCGCTC	2 cut(s)	197, 268
MfeI	CAATTG	1 cut(s)	2009
MflI	RGATCY	4 cut(s)	1354, 1817, 2992, 3188
MhlI	GDGCHC	5 cut(s)	46, 110, 306, 1602, 2904
Mly113I	GGCGCC	1 cut(s)	179
MlyI	GAGTC	3 cut(s)	43, 746, 757
MmeI	TCCRAC	2 cut(s)	649, 2680
Mph1103I	ATGCAT	3 cut(s)	2127, 2383, 2583
MroXI	GAANNNNTTC	2 cut(s)	2657, 3261
MslI	CAYNNNNRTG	2 cut(s)	2120, 3201
MspA1I	CMGCKG	2 cut(s)	176, 2244
MspI	CCGG	2 cut(s)	18, 113
MspR9I	CCNGG	1 cut(s)	2549
MunI	CAATTG	1 cut(s)	2009
Mva1269I	GAATGC	1 cut(s)	1408
MvaI	CCWGG	1 cut(s)	2549
MvnI	CGCG	2 cut(s)	102, 176
MwoI	GCNNNNNNNGC	8 cut(s)	80, 290, 332, 796, 994, 1109, 1223, 1673
NarI	GGCGCC	1 cut(s)	179
NheI	GCTAGC	1 cut(s)	2278
NlaIV	GGNNCC	5 cut(s)	9, 169, 180, 2553, 3085
NmeAIII	GCCGAG	1 cut(s)	858
NmuCI	GTSAC	3 cut(s)	631, 738, 2095
NotI	GCGGCCGC	1 cut(s)	22
NsbI	TGCGCA	2 cut(s)	800, 1825
NsiI	ATGCAT	3 cut(s)	2127, 2383, 2583
NspI	RCATGY	5 cut(s)	330, 1217, 2119, 2129, 2147
NspV	TTCGAA	1 cut(s)	123
PaeI	GCATGC	2 cut(s)	1217, 2147
PagI	TCATGA	3 cut(s)	766, 1903, 2496
PciI	ACATGT	1 cut(s)	2115
PcsI	WCGNNNNNNNCGW	2 cut(s)	99, 3118
PctI	GAATGC	1 cut(s)	1408
PdmI	GAANNNNTTC	2 cut(s)	2657, 3261
PfeI	GAWTC	5 cut(s)	1450, 1714, 2207, 2723, 3176
PflFI	GACNNNGTC	1 cut(s)	383
PflMI	CCANNNNNTGG	1 cut(s)	3003
PkrI	GCNGC	9 cut(s)	23, 26, 178, 183, 2270, 2418, 2421, 2506, 2767
PleI	GAGTC	3 cut(s)	43, 745, 757
PluTI	GGCGCC	1 cut(s)	182
PmaCI	CACGTG	1 cut(s)	94
PmlI	CACGTG	1 cut(s)	94
PpsI	GAGTC	3 cut(s)	43, 745, 757
Ppu21I	YACGTR	1 cut(s)	94
PpuMI	RGGWCCY	3 cut(s)	725, 1169, 3084
PscI	ACATGT	1 cut(s)	2115
PshAI	GACNNNNGTC	1 cut(s)	1167
PsiI	TTATAA	1 cut(s)	2538
Psp124BI	GAGCTC	2 cut(s)	110, 306
Psp5II	RGGWCCY	3 cut(s)	725, 1169, 3084
Psp6I	CCWGG	1 cut(s)	2547
PspCI	CACGTG	1 cut(s)	94
PspFI	CCCAGC	1 cut(s)	2286
PspGI	CCWGG	1 cut(s)	2547
PspN4I	GGNNCC	5 cut(s)	9, 169, 180, 2553, 3085
PspPI	GGNCC	9 cut(s)	97, 518, 725, 1036, 1169, 1309, 1879, 2552, 3084
PspPPI	RGGWCCY	3 cut(s)	725, 1169, 3084
PstI	CTGCAG	1 cut(s)	1354
PstNI	CAGNNNCTG	1 cut(s)	3003
PsuI	RGATCY	4 cut(s)	1354, 1817, 2992, 3188
PsyI	GACNNNGTC	1 cut(s)	383
PvuII	CAGCTG	1 cut(s)	2244
RsaI	GTAC	8 cut(s)	272, 926, 1397, 1494, 2231, 2511, 2546, 2587
RsaNI	GTAC	8 cut(s)	271, 925, 1396, 1493, 2230, 2510, 2545, 2586
RseI	CAYNNNNRTG	2 cut(s)	2120, 3201
SacI	GAGCTC	2 cut(s)	110, 306
SacII	CCGCGG	1 cut(s)	177
SatI	GCNGC	9 cut(s)	22, 25, 177, 182, 2269, 2417, 2420, 2505, 2766
Sau96I	GGNCC	9 cut(s)	97, 518, 725, 1036, 1169, 1309, 1879, 2552, 3084
SchI	GAGTC	3 cut(s)	43, 746, 757
ScrFI	CCNGG	1 cut(s)	2549
SduI	GDGCHC	5 cut(s)	46, 110, 306, 1602, 2904
SfcI	CTRYAG	3 cut(s)	1218, 1350, 1524
SfoI	GGCGCC	1 cut(s)	180
Sfr303I	CCGCGG	1 cut(s)	177
SfuI	TTCGAA	1 cut(s)	123
SgrAI	CRCCGGYG	1 cut(s)	17
SgrBI	CCGCGG	1 cut(s)	177
SinI	GGWCC	6 cut(s)	97, 725, 1169, 1309, 2552, 3084
SmiMI	CAYNNNNRTG	2 cut(s)	2120, 3201
SmlI	CTYRAG	1 cut(s)	3207
SmoI	CTYRAG	1 cut(s)	3207
SphI	GCATGC	2 cut(s)	1217, 2147
SspDI	GGCGCC	1 cut(s)	178
SspI	AATATT	2 cut(s)	853, 2956
SstI	GAGCTC	2 cut(s)	110, 306
StyD4I	CCNGG	1 cut(s)	2547
TaaI	ACNGT	7 cut(s)	298, 649, 1762, 1856, 2322, 2494, 2514
TaiI	ACGT	6 cut(s)	96, 426, 863, 2206, 2952, 3344
TatI	WGTACW	3 cut(s)	924, 1395, 2229
TauI	GCSGC	4 cut(s)	24, 27, 179, 184
TfiI	GAWTC	5 cut(s)	1450, 1714, 2207, 2723, 3176
TscAI	CASTG	8 cut(s)	67, 169, 747, 1051, 1461, 1695, 2311, 3004
TseFI	GTSAC	3 cut(s)	631, 738, 2095
TseI	GCWGC	5 cut(s)	2268, 2416, 2419, 2504, 2765
Tsp45I	GTSAC	3 cut(s)	631, 738, 2095
TspGWI	ACGGA	4 cut(s)	1643, 2456, 2984, 3127
TspRI	CASTG	8 cut(s)	67, 169, 747, 1051, 1461, 1695, 2311, 3004
Tth111I	GACNNNGTC	1 cut(s)	383
Van91I	CCANNNNNTGG	1 cut(s)	3003
VpaK11BI	GGWCC	6 cut(s)	97, 725, 1169, 1309, 2552, 3084
XagI	CCTNNNNNAGG	1 cut(s)	3091
XapI	RAATTY	4 cut(s)	1332, 1750, 1984, 3044
XbaI	TCTAGA	4 cut(s)	2315, 2567, 2708, 2746
XceI	RCATGY	5 cut(s)	330, 1217, 2119, 2129, 2147
XmnI	GAANNNNTTC	2 cut(s)	2657, 3261
ZraI	GACGTC	1 cut(s)	861
Zsp2I	ATGCAT	3 cut(s)	2127, 2383, 2583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.