Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023540.1

Orthogroup ID

OG0005477

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 3599

Gene Structure 3599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023540.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1461 bp

atgtcaagcagcactcctccaagagtttatcgccaaactgctactttgatgggtctccaacttgtcacttcattcataactgttgctaaaacacttggtgttcagcgtgaaactactcgaagacaattagaggctgaaaaaaagaaacaatctgaaggacctcgtgtggagtcactgaacaagaggttatttgtgcatcgctaccgagacattgaaccaaatattcggacgtcgtgtatagaggcacttggcgtgtggattttgtcatatccatcaatgttcttgcaggatttatacttgaagtatcttggatggacattgaatgacaaaaatgctggtgtaagaaaagcatctgtgcttgcattacaaaatctttatgaggttgatgataatgtgccgactctgggcctattcactgaaagattttctactcgaatgattgagcttgctgatgacattgatatttctgtggctgtatctgccattggccttgttaaacagcttttaagacatcagcttctaccagatgatgacttaggtcctttatatgatttgcttattgatgatccagcagagatcaggcatgctataggggcattagtgtatgaacacttgatttctcagaagttcattagttcccagtctggtgcaaaaggtgttgagaacaattcttctgaggtccagcttggcagaatgttgcaaattctaagagagttctctgcagatccaattcttagcgtttatgtaattgatgatgtttgggagtacatgaatgccatgaaggattggaagtgtattatctccatgctcttggatgagaatccactgattgagcttactgatgaggatgcaacaaacttggtacggcttctttctgcatctgtcaaaaaggctgtaggagagaggatagttcctgctactgataatcgaaagccatactacactaaagctcaaaaagatgtatttgagcacaacaaacaggatataactcttgccatgatgaagaactatccactacttctccgtaagttcatggcagacaaagcaaaaataccatcactggttgacattattctacacatgaatcttgggctatattccaagaggaggcaggagcagaatttcgaaaccgtccttcaactgatcaaagaggcatttttcaaacatggtgagaaggaggcgctgagatcttgcgcaaatgctatcatgctttgttcaacagacagtcaaggggagctaaaagatacggcccgtaatttagtaaaggaacttcatgatgagcttataaataataagcttaaacctgcgatgaaagaagtggtggatggtggtgatgaatatcctcttcttgtaaatttgaagagaatgtatgagcttcaattgtcaggaaatgtgcctatcgagagtttgtatgaagatatggtctcaactcttcagagctatacaaacaaggatgatcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007127 GO:0007135 GO:0008150 GO:0008608 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464 GO:0045132 GO:0045143 GO:0045144 GO:0048285 GO:0051177 GO:0051276 GO:0051316 GO:0051321 GO:0051455 GO:0051754 GO:0061982 GO:0061983 GO:0070192 GO:0070601 GO:0071840 GO:0098813 GO:0140013 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

STAG

Protein Analysis

487

Amino Acids

55.48

Weight (kDa)

5.68

Isoelectric Point (pI)

44.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47980
fragaria_vesca	FvH4_2g24570 FvH4_2g24570 FvH4_2g24570 FvH4_2g24570 FvH4_2g24570 FvH4_2g24570
malus_domestica	MD11G1296700.v1.1
prunus_persica	Prupe.8G250900_v2.0.a1 Prupe.8G250900_v2.0.a1 Prupe.8G250900_v2.0.a1 Prupe.8G250900_v2.0.a1 Prupe.8G250900_v2.0.a1 Prupe.8G250900_v2.0.a1
pyrus_communis	pycom11g26100
rosa_chinensis	RchiOBHm_Chr6g0292391
rosa_laevigata	RLG00000012032
rosa_multiflora	Rmu_sc0012226.1_g000001 Rmu_sc0023540.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026580 Rroxscaffold_7G00175100
rosa_rugosa	Rorug06G0226100 Rorug06G0226200 Rorug06G0226300
rosa_samantha	Rh6AG339600 Rh6BG346800 Rh6CG353600 Rh6DG339600
rosa_wichuraiana	Rw6G029550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1286
AatII	GACGTC	1 cut(s)	233
Acc16I	TGCGCA	1 cut(s)	1195
Acc36I	ACCTGC	1 cut(s)	1312
AclWI	GGATC	2 cut(s)	560, 719
AcsI	RAATTY	3 cut(s)	702, 1120, 1354
AcuI	CTGAAG	2 cut(s)	174, 1418
AcyI	GRCGYC	1 cut(s)	230
AdeI	CACNNNGTG	1 cut(s)	98
AfaI	GTAC	2 cut(s)	767, 864
AfiI	CCNNNNNNNGG	2 cut(s)	404, 1107
AgsI	TTSAA	8 cut(s)	215, 301, 322, 1139, 1162, 1218, 1360, 1379
Alw21I	GWGCWC	1 cut(s)	972
Alw26I	GTCTC	3 cut(s)	59, 201, 1429
AlwI	GGATC	2 cut(s)	560, 719
AoxI	GGCC	3 cut(s)	406, 487, 1248
ApeKI	GCWGC	1 cut(s)	9
ApoI	RAATTY	3 cut(s)	702, 1120, 1354
AspLEI	GCGC	2 cut(s)	1183, 1196
AspS9I	GGNCC	5 cut(s)	158, 406, 539, 679, 1249
AsuHPI	GGTGA	2 cut(s)	1181, 1343
AsuII	TTCGAA	1 cut(s)	1125
AvaII	GGWCC	3 cut(s)	158, 539, 679
BarI	GAAGNNNNNNTAC	2 cut(s)	1254, 1286
BauI	CACGAG	1 cut(s)	162
BbsI	GAAGAC	1 cut(s)	127
Bbv12I	GWGCWC	1 cut(s)	972
BbvI	GCAGC	1 cut(s)	21
BccI	CCATC	5 cut(s)	43, 280, 306, 1063, 1319
BceAI	ACGGC	2 cut(s)	881, 1263
BclI	TGATCA	2 cut(s)	1143, 1456
BcoDI	GTCTC	3 cut(s)	59, 201, 1429
BfmI	CTRYAG	3 cut(s)	588, 720, 894
BfoI	RGCGCY	1 cut(s)	1184
BfuAI	ACCTGC	1 cut(s)	1312
BglII	AGATCT	1 cut(s)	1187
BisI	GCNGC	1 cut(s)	10
BlsI	GCNGC	1 cut(s)	11
Bme18I	GGWCC	3 cut(s)	158, 539, 679
BmgT120I	GGNCC	5 cut(s)	158, 406, 539, 679, 1249
BmrI	ACTGGG	1 cut(s)	634
BmsI	GCATC	4 cut(s)	205, 359, 838, 887
BmuI	ACTGGG	1 cut(s)	634
BoxI	GACNNNNGTC	1 cut(s)	537
BpiI	GAAGAC	1 cut(s)	127
Bpu14I	TTCGAA	1 cut(s)	1125
BsaBI	GATNNNNATC	2 cut(s)	819, 1338
BsaHI	GRCGYC	1 cut(s)	230
BsaI	GGTCTC	2 cut(s)	59, 1429
BsaXI	ACNNNNNCTCC	2 cut(s)	1005, 1035
Bsc4I	CCNNNNNNNGG	2 cut(s)	404, 1107
Bse1I	ACTGG	2 cut(s)	640, 1065
Bse8I	GATNNNNATC	2 cut(s)	819, 1338
BseGI	GGATG	5 cut(s)	317, 820, 853, 1330, 1459
BseJI	GATNNNNATC	2 cut(s)	819, 1338
BseLI	CCNNNNNNNGG	2 cut(s)	404, 1107
BseMII	CTCAG	3 cut(s)	635, 666, 1175
BseNI	ACTGG	2 cut(s)	640, 1065
BseRI	GAGGAG	2 cut(s)	6, 1120
BseXI	GCAGC	1 cut(s)	21
BshFI	GGCC	3 cut(s)	408, 489, 1250
BsiHKAI	GWGCWC	1 cut(s)	972
BslI	CCNNNNNNNGG	2 cut(s)	404, 1107
BsmAI	GTCTC	3 cut(s)	59, 201, 1429
BsmI	GAATGC	1 cut(s)	778
BsnI	GGCC	3 cut(s)	408, 489, 1250
Bso31I	GGTCTC	2 cut(s)	59, 1429
Bsp119I	TTCGAA	1 cut(s)	1125
Bsp1286I	GDGCHC	1 cut(s)	972
Bsp143I	GATC	6 cut(s)	565, 576, 724, 1143, 1187, 1456
BspANI	GGCC	3 cut(s)	408, 489, 1250
BspCNI	CTCAG	3 cut(s)	634, 667, 1176
BspHI	TCATGA	1 cut(s)	1273
BspMAI	CTGCAG	1 cut(s)	724
BspMI	ACCTGC	1 cut(s)	1312
BspPI	GGATC	2 cut(s)	560, 719
BspT104I	TTCGAA	1 cut(s)	1125
BspTNI	GGTCTC	2 cut(s)	59, 1429
BsrI	ACTGG	2 cut(s)	640, 1065
BssMI	GATC	6 cut(s)	565, 576, 724, 1143, 1187, 1456
BssNI	GRCGYC	1 cut(s)	230
BssSI	CACGAG	1 cut(s)	162
Bst2BI	CACGAG	1 cut(s)	162
Bst4CI	ACNGT	3 cut(s)	82, 1132, 1226
Bst6I	CTCTTC	3 cut(s)	1350, 1355, 1437
BstACI	GRCGYC	1 cut(s)	230
BstBI	TTCGAA	1 cut(s)	1125
BstC8I	GCNNGC	3 cut(s)	360, 447, 585
BstDEI	CTNAG	6 cut(s)	535, 621, 675, 707, 734, 1184
BstF5I	GGATG	5 cut(s)	317, 820, 853, 1330, 1459
BstH2I	RGCGCY	1 cut(s)	1184
BstHHI	GCGC	2 cut(s)	1183, 1196
BstKTI	GATC	6 cut(s)	568, 579, 727, 1146, 1190, 1459
BstMAI	GTCTC	3 cut(s)	59, 201, 1429
BstMBI	GATC	6 cut(s)	565, 576, 724, 1143, 1187, 1456
BstMWI	GCNNNNNNNGC	3 cut(s)	479, 593, 1043
BstNSI	RCATGY	1 cut(s)	587
BstPAI	GACNNNNGTC	1 cut(s)	537
BstSFI	CTRYAG	3 cut(s)	588, 720, 894
BstV1I	GCAGC	1 cut(s)	21
BstV2I	GAAGAC	1 cut(s)	127
BstX2I	RGATCY	2 cut(s)	724, 1187
BstXI	CCANNNNNNTGG	1 cut(s)	811
BstYI	RGATCY	2 cut(s)	724, 1187
BsuRI	GGCC	3 cut(s)	408, 489, 1250
BtgZI	GCGATG	2 cut(s)	182, 1322
BtsCI	GGATG	5 cut(s)	317, 820, 853, 1330, 1459
BtsIMutI	CAGTG	4 cut(s)	173, 414, 824, 1058
BveI	ACCTGC	1 cut(s)	1312
Cac8I	GCNNGC	3 cut(s)	360, 447, 585
CciI	TCATGA	1 cut(s)	1273
CfoI	GCGC	2 cut(s)	1183, 1196
Cfr13I	GGNCC	5 cut(s)	158, 406, 539, 679, 1249
Csp6I	GTAC	2 cut(s)	766, 863
CviQI	GTAC	2 cut(s)	766, 863
DdeI	CTNAG	6 cut(s)	535, 621, 675, 707, 734, 1184
DpnI	GATC	6 cut(s)	567, 578, 726, 1145, 1189, 1458
DpnII	GATC	6 cut(s)	565, 576, 724, 1143, 1187, 1456
DraIII	CACNNNGTG	1 cut(s)	98
Eam1104I	CTCTTC	3 cut(s)	1350, 1355, 1437
EarI	CTCTTC	3 cut(s)	1350, 1355, 1437
Eco31I	GGTCTC	2 cut(s)	59, 1429
Eco47I	GGWCC	3 cut(s)	158, 539, 679
Eco57I	CTGAAG	2 cut(s)	174, 1418
EcoO109I	RGGNCCY	2 cut(s)	158, 539
FbaI	TGATCA	2 cut(s)	1143, 1456
Fnu4HI	GCNGC	1 cut(s)	10
FokI	GGATG	4 cut(s)	324, 827, 860, 1337
Fsp4HI	GCNGC	1 cut(s)	10
FspI	TGCGCA	1 cut(s)	1195
GlaI	GCGC	2 cut(s)	1182, 1195
GluI	GCNGC	1 cut(s)	10
HaeII	RGCGCY	1 cut(s)	1184
HaeIII	GGCC	3 cut(s)	408, 489, 1250
HhaI	GCGC	2 cut(s)	1183, 1196
Hin1I	GRCGYC	1 cut(s)	230
Hin6I	GCGC	2 cut(s)	1181, 1194
HinP1I	GCGC	2 cut(s)	1181, 1194
HincII	GTYRAC	1 cut(s)	1066
HindII	GTYRAC	1 cut(s)	1066
HindIII	AAGCTT	1 cut(s)	1295
HinfI	GANTC	4 cut(s)	170, 400, 820, 1084
HphI	GGTGA	2 cut(s)	1181, 1343
Hpy166II	GTNNAC	1 cut(s)	1066
Hpy188I	TCNGA	5 cut(s)	154, 228, 624, 676, 1437
Hpy188III	TCNNGA	3 cut(s)	1274, 1386, 1402
Hpy8I	GTNNAC	1 cut(s)	1066
Hpy99I	CGWCG	1 cut(s)	235
HpyAV	CCTTC	4 cut(s)	149, 775, 1145, 1168
HpyCH4III	ACNGT	3 cut(s)	82, 1132, 1226
HpyCH4IV	ACGT	1 cut(s)	230
HpyCH4V	TGCA	8 cut(s)	196, 286, 362, 650, 700, 722, 851, 878
HpyF10VI	GCNNNNNNNGC	3 cut(s)	479, 593, 1043
HpyF3I	CTNAG	6 cut(s)	535, 621, 675, 707, 734, 1184
HpySE526I	ACGT	1 cut(s)	230
Hsp92I	GRCGYC	1 cut(s)	230
HspAI	GCGC	2 cut(s)	1181, 1194
Ksp22I	TGATCA	2 cut(s)	1143, 1456
Kzo9I	GATC	6 cut(s)	565, 576, 724, 1143, 1187, 1456
LmnI	GCTCC	2 cut(s)	1114, 1234
Lsp1109I	GCAGC	1 cut(s)	21
LweI	GCATC	4 cut(s)	205, 359, 838, 887
MaeII	ACGT	1 cut(s)	230
MaeIII	GTNAC	2 cut(s)	64, 171
MalI	GATC	6 cut(s)	567, 578, 726, 1145, 1189, 1458
MboI	GATC	6 cut(s)	565, 576, 724, 1143, 1187, 1456
MboII	GAAGA	7 cut(s)	132, 663, 1015, 1337, 1372, 1424, 1427
MfeI	CAATTG	1 cut(s)	1379
MflI	RGATCY	2 cut(s)	724, 1187
MhlI	GDGCHC	1 cut(s)	972
MluCI	AATT	9 cut(s)	125, 667, 702, 729, 747, 1120, 1255, 1354, 1379
MlyI	GAGTC	2 cut(s)	179, 394
MmeI	TCCRAC	1 cut(s)	82
MseI	TTAA	3 cut(s)	495, 506, 1299
MunI	CAATTG	1 cut(s)	1379
Mva1269I	GAATGC	1 cut(s)	778
MwoI	GCNNNNNNNGC	3 cut(s)	479, 593, 1043
NdeII	GATC	6 cut(s)	565, 576, 724, 1143, 1187, 1456
NmuCI	GTSAC	2 cut(s)	64, 171
NsbI	TGCGCA	1 cut(s)	1195
NspI	RCATGY	1 cut(s)	587
NspV	TTCGAA	1 cut(s)	1125
PaeI	GCATGC	1 cut(s)	587
PagI	TCATGA	1 cut(s)	1273
PctI	GAATGC	1 cut(s)	778
PfeI	GAWTC	2 cut(s)	820, 1084
PkrI	GCNGC	1 cut(s)	11
PleI	GAGTC	2 cut(s)	178, 394
PpsI	GAGTC	2 cut(s)	178, 394
PpuMI	RGGWCCY	2 cut(s)	158, 539
PshAI	GACNNNNGTC	1 cut(s)	537
PsiI	TTATAA	1 cut(s)	1286
Psp5II	RGGWCCY	2 cut(s)	158, 539
PspPI	GGNCC	5 cut(s)	158, 406, 539, 679, 1249
PspPPI	RGGWCCY	2 cut(s)	158, 539
PstI	CTGCAG	1 cut(s)	724
PsuI	RGATCY	2 cut(s)	724, 1187
RsaI	GTAC	2 cut(s)	767, 864
RsaNI	GTAC	2 cut(s)	766, 863
SaqAI	TTAA	3 cut(s)	495, 506, 1299
SatI	GCNGC	1 cut(s)	10
Sau3AI	GATC	6 cut(s)	565, 576, 724, 1143, 1187, 1456
Sau96I	GGNCC	5 cut(s)	158, 406, 539, 679, 1249
SchI	GAGTC	2 cut(s)	179, 394
SduI	GDGCHC	1 cut(s)	972
SfaNI	GCATC	4 cut(s)	205, 359, 838, 887
SfcI	CTRYAG	3 cut(s)	588, 720, 894
SfuI	TTCGAA	1 cut(s)	1125
SinI	GGWCC	3 cut(s)	158, 539, 679
SphI	GCATGC	1 cut(s)	587
Sse9I	AATT	9 cut(s)	125, 667, 702, 729, 747, 1120, 1255, 1354, 1379
SspI	AATATT	1 cut(s)	223
TaaI	ACNGT	3 cut(s)	82, 1132, 1226
TaiI	ACGT	1 cut(s)	233
TaqI	TCGA	5 cut(s)	118, 433, 928, 1125, 1401
TasI	AATT	9 cut(s)	125, 667, 702, 729, 747, 1120, 1255, 1354, 1379
TatI	WGTACW	1 cut(s)	765
TfiI	GAWTC	2 cut(s)	820, 1084
Tru1I	TTAA	3 cut(s)	495, 506, 1299
Tru9I	TTAA	3 cut(s)	495, 506, 1299
TscAI	CASTG	4 cut(s)	180, 421, 831, 1065
TseFI	GTSAC	2 cut(s)	64, 171
TseI	GCWGC	1 cut(s)	9
Tsp45I	GTSAC	2 cut(s)	64, 171
TspGWI	ACGGA	1 cut(s)	1013
TspRI	CASTG	4 cut(s)	180, 421, 831, 1065
VpaK11BI	GGWCC	3 cut(s)	158, 539, 679
XapI	RAATTY	3 cut(s)	702, 1120, 1354
XceI	RCATGY	1 cut(s)	587
ZraI	GACGTC	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.